GEISHA - A Chicken Embryo Gene Expression Database
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HDAC9
histone deacetylase 9

Gene
Official SymbolHDAC9
Official Full Namehistone deacetylase 9
CGNC ID51296
also known ashistone deacetylase 9, Histone deacetylase 9
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Sequence Information
Genomic
RNANM_001030981
PolypeptideNP_001026152
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human9734ENSG00000048052MIM:606543
Mouse79221ENSMUSG00000004698All phenotypic alleles (2):Targeted, knock-out(1) Targeted, other(1) MGI:1931221
Xenopus100493483, 378615488738
Zebrafish393789, 798103ENSDARG00000056642ZDB-GENE-040109-7, ZDB-GENE-070622-1ZFIN:ZDB-GENE-040109-7, ZFIN:ZDB-GENE-070622-1
Gene Ontology
Molecular FunctionNAD-dependent histone deacetylase activity (H3-K14 specific), more...NAD-dependent histone deacetylase activity (H3-K18 specific), NAD-dependent histone deacetylase activity (H3-K9 specific), NAD-dependent histone deacetylase activity (H4-K16 specific), transcription corepressor activity
Biological Processheart development, negative regulation of transcription from RNA polymerase II promoter, more...negative regulation of transcription, DNA-templated, regulation of skeletal muscle fiber development, regulation of striated muscle cell differentiation, transcription, DNA-templated
Cellular Componenthistone methyltransferase complex
Links to other databases
Entrez Gene420599
Ensembl Gene
KEGGgga:420599

Entry 1

GEISHA Idpgp1c.pk003.p20Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
AGAAAGCACCGAGATACTTCTTTGATTCTTCGTCCACCTGCTGTTGGCTCCTAGAGCACAGCTGGTCAAACTCTGAGGC
GCGCAGCCCAGCATGTCCTCTCACTGCTGTGTAAAGTGGATTTCGCCTTTTCTCTCCTAATAGATACTTGTTCAAATGC
TTAAACATTTCTAATTACTGAAGTGTACTGTCTGACGAGCCCGGCTGGAGGAGGTAGGACGGCAGAGGGTCGTGGCTGA
CTCCCCTGTGCAAGTGCCGTGATGAATCTCTCATGTAGCTGAAGTGCAGACTGGTTGGAATATGCTGCAGACAATTTAC
GAGAGTGAATCGTGTTTTTCCTCAGATGGGGTTTCTGGACGTGAACAGCTCTTGGCTCAGCAAAGAATGCACAGTATGA
TCAGCTCAGTGGATGTGAAGTCGGAGGTTCCCGTGGGACTAGAGCCTATCTCACCATTAGACTTGCGAACTGATCTCAG
GATGATGGTTCCCATGGTGGACCCAATTATGCGTGAAAAGCAGCTACAGCAGGAGCTACTTCTGATCCAGCAGCAGCAG
CAAATTCAGAAACAACTGCTGATTGCAGAGTTTCAGAAACAGCATGAAAACCTGACCCGCCAGCACCAGGCCCAGCTCC
AGGAGCACATAAAGGAACTCCTAGCCATTAAACAGCAGCAAGAACTTCTTGAAAAAGAGCAGAAACTGGAGCAACAGAG
GCAAGAGCAGGAACTGGAGAGGCATCGCAGGGAACAGCAGCTCCCTCCCCTCAGAGGCAAAGAAAGAAGCCGAGAAAGG
GCAGTAGCCAGT
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10
Surface Ectoderm
@ ant neuropore
13-18
stage 13
stage 14
Heart
Pharyngeal Arches and Clefts
Somites
 
19-22
stage 21
stage 22
Eye
Myotome
Neural Plate/Tube
Pharyngeal Arches and Clefts
Ventricles
 

Entry 2

GEISHA IdHDAC9.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerCCTGTATGTTTCCCTCCATCGC
Reverse cDNA Template PrimerATTAACCCTCACTAAAGGCTTTGTGCCCAGTGTTTATGTTCCcDNA Template Length826
Forward cDNA Template Probeshow
TCTGAACGNGGCCACCCAAGCAGCAGACAAGACATGGTCTGNAGGGTGCTTTGGGGGGATACACAATGNATGTCACCCA
CAGGAAATATCAGGGAGGACTTGGCACTTCACAAGGCTGGCTCTTCTTCCATGGGCTCGCCAGCAGCTCTGCTGCCTTC
CTGAGGAAAGCACTGCTCAACATCCACTGAAAGGGAGGCCATAGCAGACACCGTTTCTGTCTCCTCCCTCTCTCGTTTC
TGAGACTCAGCCAGAGCACAATCCACTGGCACAGAGTATGGCTCCACTGACTTCCAGTACTTGCTTTGAATTTCAGTGG
TCTTTTTTAAAGAAGCAATTGCATTCATATTGGGGATTTGGTGCACGATATCTTCTGGGAGAGGCTCCAGCTCATTTCC
TAAAAGGGCATTTATACAGGCTTCAGATGCATCACAGATGGCAGTAAGGTCATGTCCTCCCTCCAGTGCCAGCACGACA
CGGCCGTCCGCTAGCTTCAGCAATTGCTTGGTTAGGTGACCAAAACATTTGGCTGTGACTTTATAGCCGCCCAGTGGAG
GGTCGTGGCCTTCCACGGCATCGAATCCTGCTGACACCAGGACAATCTCTGGATCAAACTCATTGGCAGCTGGCATGAT
CACAGTCCTGAATGCTGTGAGATATTCAACATCTCCCATGGGAGGATCCAAACCACCTGTCCAAGCAATATTTATATTA
AAACCTTCACCTGGGCCACTTCCNACCTCATTTGGGGCTCCACTGCCAGGGAAGAAGTTGCCTTCATCATAGCGATGGA
GGAAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 8
stage 9
stage 10
stage 10
stage 12
stage 12
stage 12
Somites
Unlabeled
 
13-18
stage 13
stage 13
stage 14
stage 15
stage 15
stage 15
Sclerotome
Somites
Trapping in neural tube
19-23
stage 21
stage 21
stage 23
stage 23
stage 23
stage 23
stage 23
stage 23
Dermomyotome
Eye
Forebrain
Foregut
Hindbrain
Mesonephros
Midbrain
Oral Pharynx
Pharyngeal Arches and Clefts
Sclerotome
Spinal Cord
Trunk Mesenchyme
 

Mouse

EmageMGI:1931221
MGI GXDMGI:1931221

Frog

Xenbase488738

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-040109-7, ZDB-GENE-070622-1
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