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CDX1 Gene Summary Expression Other Species Expression JBrowse Gene Official Symbol CDX1 Official Full Name caudal type homeobox 1 CGNC ID 4232 also known as CDX-A, CDXA, CHOX-CAD1, CHox-cad, homeobox protein CDX-1|caudal type homeo box transcription factor 1|caudal type homeobox transcription factor 1|caudal-type homeodomain protein A|caudal-type homeodomain protein, CdxA|homeobox protein CHOX-CAD, Homeobox protein CHOX-CAD, CHOX-CAD, CdxA gene type protein-coding
Genomic Map Sequence Information Gene Expression Orthology Gene Ontology Links to other databases
Entry 1 GEISHA Id ChEST637p4 Data Source GEISHA ISH Analysis Forward cDNA Template Probe show AGAATGAGCCGGTGGGATGCTTCCTGCACGGTCTTCCTGGTGATCCAGCTGCCTGCTGCTTTGGAGCAGCTTTAGTGAG
Entry 2 GEISHA Id CdxA.Matsushita.2002 Data Source Publication Complete cDNA Template Probe show CCCCCTCCACCAGCCATAGACACTGAGAGATAAGCACTACACGGCAGAGCTTGTTGCTGAGCGCCCAAAGACACCACGT
Citation Matsushita S, Ishii Y, Scotting PJ, Kuroiwa A, Yasugi S. Pre-gut endoderm of chick embryos is regionalized by 1.5 days of development. Dev Dyn. 2002 Jan;223(1):33-47. Copyright Copyright © 2002 Wiley-Liss., Inc. Comments Insufficient information provided to identify probe sequence. Matsushita et al indicate that probe was generated using a 711 nt fragment of the 3' UTR. Entire UTR is mapped above.
Entry 3 GEISHA Id CdxA.Hiramatsu.2004 Data Source Publication Complete cDNA Template Probe show GCTGCGTGACACCCGGCCGCTTCGGCACGGAGCGGCGCAGCGCGGTGCATCGGCACAGCATGAGCACAGAGCCAGGTGG
Citation Hiramatsu H, Yasugi S. Molecular analysis of the determination of developmental fate in the small intestinal epithelium in the chicken embryo. Int J Dev Biol. 2004 Dec;48(10):1141-8. Copyright "Reprinted from Int. J. Dev. Biol., 48,Hiramatsu H, Yasugi S , Molecular analysis of the determination of developmental fate in the small intestinal epithelium in the chicken embryo, 1141-8, Copyright (2004), with permission from Copyright © 2004 UBC Press". All rights reserved. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # AB046532 ).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 4-6 stage 6
Midgut 7-12 stage 9
stage 12
Midgut 31-44 stage 44
Midgut
Entry 4 GEISHA Id CdxA.Chapman.2008 Data Source Direct Submission Complete cDNA Template Probe show AAGCTTTTCCAGCCACAGGCCCCTCTGGCAATACATAGGCCAAAGAGGAGGAAAAGAAGGAAGTTATCACTGGTGGATC
Comments Probe apparently genomic fragment overlapping with coding exons.
Images Provided by Susan Chapman.
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 4 stage 4
Primitive Streak
Entry 5 GEISHA Id CdxA.Kumar.2003 Data Source Publication Complete cDNA Template Probe show GCTGCGTGACACCCAGCCGCTTCGGCACGGAGCGGCGCAGCGCGGTGCATCGGCACAGCATGAGCACAGAGCCAGGTGG
Citation Kumar M, Jordan N, Melton D, Grapin-Botton A. Signals from lateral plate mesoderm instruct endoderm toward a pancreatic fate. Dev Biol. 2003 Jul 1;259(1):109-22. Copyright Copyright © 2003 Elsevier Science (USA). All rights reserved. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204676).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 19-23 stage 23
stage 23
Gut
Entry 6 GEISHA Id CDX1.Alev.2010 Data Source Publication Complete cDNA Template Probe show ATGTGCTGCACCATTGGTAACCAATGGCTTTTTTTTCCTGCTGGAAATCCACAGTTAAAATTCCCCTTAATCCTGCTGA
Citation Alev C, Wu Y, Kasukawa T, Jakt LM, Ueda HR, Sheng G. Transcriptomic landscape of the primitive streak. Development. 2010 Sep 1;137(17):2863-74. Epub 2010 Jul 28. Copyright Published by The Company of Biologists 2010. This material is protected by a copyright retained by the authors. Permission granted by Dr. G Sheng. Comments The probe for CDX1 was amplified by PCR using the following primers:
forward (5' to 3'): ATGTGCTGCACCATTGGTAA
reverse (3' to 5'): TGTACACAAGCCCTGAGCTG
Entry 7 GEISHA Id cdxA.Bel-Vialar.2002 Data Source GEISHA ISH Analysis Complete cDNA Template Probe show GCTGCGTGACACCCAGCCGCTTCGGCACGGAGCGGCGCAGCGCGGTGCATCGGCACAGCATGAGCACAGAGCCAGGTGG
Citation Sophie Bel-Vialar, Nobue Itasaki, Robb Krumlauf. Initiating Hox gene expression: in the early chick neural tube differential sensitivity to FGF and RA signaling subdivides the HoxB genes in two distinct groups. Development 2002 Nov;129(22):5103-15. Copyright Copyright © The Company of Biologists Limited 2002. Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence above was obtained from NCBI (accession number NM_204676.2).
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