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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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CHGA
chromogranin A

Gene

Official Symbol	CHGA
Official Full Name	chromogranin A
CGNC ID	8222
also known as	chromogranin-A\|chromogranin A (parathyroid secretory protein 1)
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI

Sequence Information

Genomic
RNA	XM_421330
Polypeptide	XP_421330

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	1113	ENSG00000100604		MIM:118910
Mouse	12652	ENSMUSG00000021194	All phenotypic alleles (4):Targeted, knock-out(2) Targeted, other(2)	MGI:88394
Xenopus	493296, 495018			960410
Zebrafish	450039	ENSDARG00000008829	ZDB-GENE-041010-161	ZFIN:ZDB-GENE-041010-161

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	423420
Ensembl Gene	ENSGALG00000010820
KEGG	gga:423420

Entry 1

GEISHA Id	CHGA.Ratie.2013	Data Source	Publication
Complete cDNA Template Probe	show CAGGAATGAAGCCAGTTTACTGCATTTCTCTTGCCTTCAAGACACCATTTTTGCCTTAATAATGCAGAGGAGTGTTGCC CAAAAGTTACCCACTAGCATCCAGGAGGGTGTCATGTTGGTTGAAAGTGAAGTTAAATGTGTTGGCTCTGAGCAAGGAG AGAGCACCTGCCCCTCTTGCCATCATCTGCTTTTGGGGAAGGTCTCTTCCCCCCAAAAGGCTGCTCCCTCCTAGCCCAG AGCCCTTACAGCAGCTCTGGGAGCACCTCATCCTTCTTGGTCAAAAGCAGTGTGAGTTGTATGGAGGAGGTCTACCCTG CTGCTCCTGGAAAACTGGGACTGAATGGCCCAAATACCTCCATGTGTGCAGGCAAGGACTGAGGCAACACTCCCATATC TTCCCATTGCAGTAGGCAGTGAAATAGGCAGGTGGCATGGCTCCAGTCATGCTTCCCACCCCTATCACCTCCCTGTTGC CCCATTTCTGCTCTCGTTGCAGGACCAGGAGCTGGAGAGCCTGGCCGCCATTGAGGCTGAGCTGGAGCGCGTGGCCCAC AAGCTGCACGAGCTGAGGCGGGGCTGAGGGCTGGCTGCAGCCTCTCTCCACCATGGTCTCCTTTCCTGGTCTCATGCCG AGTACGATGAGCAGAAGCACCACGCCTTGGACGCCGGCCCCACGGGCGCCAGGCCCGCCTCCCTCGCAGTAGTGTTGTG CCCATCACTGCTTCTTGCCCCCACGCTCCTCTGTCCACCTGCCCCATCGGGCCACCGTAGCCAAGAAGTGTGACCTACA CCTGTATTTTCTCTCTTTTCTTTATTTTTCTTTCCTCCCTCCCCTTCTGTTTTTTAAAAGGCAGGAGAGCTCTCTAAGA AGTTCTCCTCCCACTGGTAGTTTCACTGGGTAAAACTGCAATAACTTGTTACCTTTTGATTAAAAGCTGAGAACTCTGA CTGTAATATATTCTATATAAAAAATTTATCTAAGGAAAAATAG
Citation	Leslie Ratié, Michelle Ware, Frédérique Barloy-Hubler, Hélène Romé, Isabelle Gicquel, Christèle Dubourg, Véronique David and Valérie Dupé. Novel genes upregulated when NOTCH signalling is disrupted during hypothalamic development. Neural Dev. 2013 Dec 23;8:25. doi: 10.1186/1749-8104-8-25.
Copyright	© 2013 Ratié et al.; licensee BioMed Central Ltd.
Comments	The sequence below was obtained from NCBI (acc # CR523039.1) using the information provided in the publication as described in Ratie et al.

Stage

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Location (click to highlight)

Comments (click to highlight)

13-15

stage 15

Hypothalamus
Mesencephalon
Nasal Placode/Nerve
Peripheral Nervous System
Unlabeled

left embryo = control vehicle, DMSO; right embryo = DAPT-treated

Entry 2

GEISHA Id	CHGA.Ratie.2014	Data Source	Publication
Complete cDNA Template Probe	show CAGGAATGAAGCCAGTTTACTGCATTTCTCTTGCCTTCAAGACACCATTTTTGCCTTAATAATGCAGAGGAGTGTTGCC CAAAAGTTACCCACTAGCATCCAGGAGGGTGTCATGTTGGTTGAAAGTGAAGTTAAATGTGTTGGCTCTGAGCAAGGAG AGAGCACCTGCCCCTCTTGCCATCATCTGCTTTTGGGGAAGGTCTCTTCCCCCCAAAAGGCTGCTCCCTCCTAGCCCAG AGCCCTTACAGCAGCTCTGGGAGCACCTCATCCTTCTTGGTCAAAAGCAGTGTGAGTTGTATGGAGGAGGTCTACCCTG CTGCTCCTGGAAAACTGGGACTGAATGGCCCAAATACCTCCATGTGTGCAGGCAAGGACTGAGGCAACACTCCCATATC TTCCCATTGCAGTAGGCAGTGAAATAGGCAGGTGGCATGGCTCCAGTCATGCTTCCCACCCCTATCACCTCCCTGTTGC CCCATTTCTGCTCTCGTTGCAGGACCAGGAGCTGGAGAGCCTGGCCGCCATTGAGGCTGAGCTGGAGCGCGTGGCCCAC AAGCTGCACGAGCTGAGGCGGGGCTGAGGGCTGGCTGCAGCCTCTCTCCACCATGGTCTCCTTTCCTGGTCTCATGCCG AGTACGATGAGCAGAAGCACCACGCCTTGGACGCCGGCCCCACGGGCGCCAGGCCCGCCTCCCTCGCAGTAGTGTTGTG CCCATCACTGCTTCTTGCCCCCACGCTCCTCTGTCCACCTGCCCCATCGGGCCACCGTAGCCAAGAAGTGTGACCTACA CCTGTATTTTCTCTCTTTTCTTTATTTTTCTTTCCTCCCTCCCCTTCTGTTTTTTAAAAGGCAGGAGAGCTCTCTAAGA AGTTCTCCTCCCACTGGTAGTTTCACTGGGTAAAACTGCAATAACTTGTTACCTTTTGATTAAAAGCTGAGAACTCTGA CTGTAATATATTCTATATAAAAAATTTATCTAAGGAAAAATAG
Citation	Ratié L, Ware M, Jagline H, David V and Dupé V (2014) Dynamic expression of Notch-dependent neurogenic markers in the chick embryonic nervous system. Front. Neuroanat. 8:158. doi: 10.3389/fnana.2014.00158
Copyright	Copyright © 2014 Ratié, Ware, Jagline, David and Dupé.
Comments	The sequence below was obtained from NCBI (acc # CR523039.1) using the information provided in the publication as described in Ratie et al.

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 10

stage 12

Peripheral Nervous System
Rhombomeres

13-18

stage 14

stage 15

stage 16

stage 17

stage 18

Cranial PNS
Peripheral Nervous System
Rhombomeres
Unlabeled

Double labeled with HuC/D antibody (brown) and mRNA Probe (blue)
control - shows normal expression

19-22

stage 22

Cranial PNS
Peripheral Nervous System
Rhombomeres
Spinal Cord
Spinal Ganglia and Nerves

Double labeled with HuC/D antibody (brown) and mRNA Probe (blue)
mz: mantle zone

Entry 3

GEISHA Id	CHGA.Ware.2014	Data Source	Publication
Complete cDNA Template Probe	show CAGGAATGAAGCCAGTTTACTGCATTTCTCTTGCCTTCAAGACACCATTTTTGCCTTAATAATGCAGAGGAGTGTTGCC CAAAAGTTACCCACTAGCATCCAGGAGGGTGTCATGTTGGTTGAAAGTGAAGTTAAATGTGTTGGCTCTGAGCAAGGAG AGAGCACCTGCCCCTCTTGCCATCATCTGCTTTTGGGGAAGGTCTCTTCCCCCCAAAAGGCTGCTCCCTCCTAGCCCAG AGCCCTTACAGCAGCTCTGGGAGCACCTCATCCTTCTTGGTCAAAAGCAGTGTGAGTTGTATGGAGGAGGTCTACCCTG CTGCTCCTGGAAAACTGGGACTGAATGGCCCAAATACCTCCATGTGTGCAGGCAAGGACTGAGGCAACACTCCCATATC TTCCCATTGCAGTAGGCAGTGAAATAGGCAGGTGGCATGGCTCCAGTCATGCTTCCCACCCCTATCACCTCCCTGTTGC CCCATTTCTGCTCTCGTTGCAGGACCAGGAGCTGGAGAGCCTGGCCGCCATTGAGGCTGAGCTGGAGCGCGTGGCCCAC AAGCTGCACGAGCTGAGGCGGGGCTGAGGGCTGGCTGCAGCCTCTCTCCACCATGGTCTCCTTTCCTGGTCTCATGCCG AGTACGATGAGCAGAAGCACCACGCCTTGGACGCCGGCCCCACGGGCGCCAGGCCCGCCTCCCTCGCAGTAGTGTTGTG CCCATCACTGCTTCTTGCCCCCACGCTCCTCTGTCCACCTGCCCCATCGGGCCACCGTAGCCAAGAAGTGTGACCTACA CCTGTATTTTCTCTCTTTTCTTTATTTTTCTTTCCTCCCTCCCCTTCTGTTTTTTAAAAGGCAGGAGAGCTCTCTAAGA AGTTCTCCTCCCACTGGTAGTTTCACTGGGTAAAACTGCAATAACTTGTTACCTTTTGATTAAAAGCTGAGAACTCTGA CTGTAATATATTCTATATAAAAAATTTATCTAAGGAAAAATAG
Citation	Ware M, Hamdi-Rozé H and Dupé V (2014) Notch signaling and proneural genes work together to control the neural building blocks for the initial scaffold in the hypothalamus. Front Neuroanat. 2014 Dec 2;8:140. doi: 10.3389/fnana.2014.00140.
Copyright	Copyright © 2014 Ware, Hamdi-Rozé and Dupé
Comments	The sequence below was obtained from NCBI (acc # CR523039.1) using the information provided in the publication as described in Ratie et al.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

stage 13

Hypothalamus

Entry 4

GEISHA Id	CHGA.Anderson.2020	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GATGAGCTGGCCAAGCAGCTGTCATCAAAGAAGCACATGGAGGAAAATGATAGTGGAGAAGACCCAGACAGGTCCATGA AAATGGCATTCAGGTCCCACAAGTATGACTTCAGTAGCCCAGAGGAAGATGTGAGAAGGTCATGGAAGCATCACCCAAA GGAGGACAGCAGTGAAGGATTTCCGCTTGTTCCCATGCCTGAAGAAAAGAAGGATGAGGAAGGCAGTGCTAACAGGAGA ACAGAGGACCAGGAGCTGGAGAGCCTGGCCGCCATTGAGGCTGAGCTGGAGCGCGTGGCCCACAAGCTGCACGAGCTGA GGCGGGGCTGAGGGCTGGCTGCAGCCTCTCTCCACCATGGTCTCCTTTCCTGGTCTCATGCCGAGTACGATGAGCAGAA GCACCACGCCTTGGACGCCGGCCCCACGGGCGCCAGGCCCGCCTCCCTCGCAGTAGTGTTGTGCCCATCACTGCTTCTT GCCCCCACGCTCCTCTGTCCACCTGCCCCATCGGGCCACCGTAGCCAAGAAGTGTGACCTACACCTGTATTTTCTCTCT TTTCTTTATTTTTCTTTCCTCCCTCCCCTTCTGTTTTTTAAAGCGGCAGGAGAGCTCTCTAAGAAGTTCTCCTCCCACT GGTAGTTTCACTGGGTAAAACTGCAATAACTTGTTACCTTTTGATTAAAAGCTGAGAACTCTGACTGTAATATATTCTA TATAACAAATGTATCTTGGGAAAAACAGAAA
Comments	Images and probe sequence provided by Claire Anderson. The probe was synthesized from cDNA clone ChEST139e12; Related article: Anderson C1, Khan MAF1, Wong F2, Solovieva T1, Oliveira NMM1, Baldock RA3, Tickle C4, Burt DW2, Stern CD1. A strategy to discover new organizers identifies a putative heart organizer. Nat Commun. 2016 Aug 25;7:12656. doi: 10.1038/ncomms12656.