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FOXA2 forkhead box A2 Gene Summary Expression Other Species Expression JBrowse Gene Official Symbol FOXA2 Official Full Name forkhead box A2 CGNC ID 49366 also known as HNF-3BETA, hepatocyte nuclear factor 3-beta|hepatocyte nuclear factor-3beta|transcription factor Foxa2, FOX2A, HNF-3b , HNF3b gene type protein-coding
Genomic Map Sequence Information Gene Expression Orthology Entrez Gene Ensembl Gene Genetic Phenotypes MOD Fruit Fly Human Mouse Xenopus Zebrafish
Gene Ontology Molecular Function Biological Process Cellular Component
Links to other databases
Entry 1 GEISHA Id HNF-3b Data Source GEISHA ISH Analysis Complete cDNA Template Probe show CGGTGAGCAACATGAACGCGGGGCTGGGCATGAACAGCATGAACACGTACATGACCATGTCGGCCATGAGCACCACGGC CAACATGACGGCAGCCACCTCCATGAACATGTCCTACGCCAACACGGGCATGAGCCCTTCACTCGCCGGCATGTCCCCA GGTGCGGGGGCCATGGCCGGCATGGGCTCGGCCGGCGTGGCGGGGATGGGTGCCCACCTGAGCCCCAGCATGAGCCCCA TGGGAGGCCAAGCGGGCTCTATGAACGCCCTGGCCCCCTACACCAACATGAATTCCATGAGCCCCATCTATGGGCAATC CAACCTCAACCGCTCGCGGGACCCCAAGACGTACCGGCGGAGCTACACGCACGCCAAGCCCCCCTACTCCTACATCTCG CTCATCACCATGGCCATCCAGCAGTCGCCCAACAAGATGCTGACGCTGAGCGAGATCTACCAGTGGATCATGGACCTCT TCCCCTTCTACCGCCAGAACCAGCAACGCTGGCAGAACAGCATCCGCCACTCGCTTTCCTTCAATGACTGCTTCCTCAA GGTGCCCCGCTCCCCAGACAAGCCGGGCAAAGGCTCCTTCTGGACGCTGCACCCCGACTCGGGCAACATGTTTGAGAAC GGCTGCTACCTGCGGCGCCAGAAGCGCTTCAAGTGTGAGAAGCAGCTGGCGACCAAGGACGGCGGCGGGGGCAAGAAGG GGCCGGGGCAGCCCCCCAGCCAGCCCCTGGGGGAGGGCAGCTCCTCGGGGGGCTCCGAGGGCTCGGCGGGAGCTGAGTC ACCAGCGAGTGCCTCGCCATGCCGGGACCACAAGCGTGCCCTGGCCGAGCTGAAGGGTGCGGCGGCGGGGCCGAGTCCC GGGGAGCCGTCGGCGGCCTCTCCAGCGCAGCACCTGCTGGCCCCGCCGCACGCCGGGCTGCCCCACGACGCCCACCTCA AGCCCGAGCACCACTACGCCTTCAACCACCCCTTCTCCATCAACAACCTGATGTCGTCCTCCGAGCAGCAGCACCACCA CCACCCGCACCACCACCACCACCCCTCGCACAAAATGGACCTCAAGGCCTACGAGCAGGTGATGCACTACTCGGGCTAC GCCTCGCCCGTGCCCGCCAGCCTGGCCATGGGGCCCGTAACGAACAAAAACCCATTGGAGTCCTCCCCTTTGGCCGGAG AGACTTCTTACTACCAAGGTGTGTATTCCCGGCCCATCATGAACTCCTCCTAA
Entry 2 Entry 3 GEISHA Id HNF3b.Chapman.2002 Data Source Publication Complete cDNA Template Probe show CGGTGAGCAACATGAACGCGGGGCTGGGCATGAACAGCATGAACACGTACATGACCATGTCGGCCATGAGCACCACGGC CAACATGACGGCAGCCACCTCCATGAACATGTCCTACGCCAACACGGGCATGAGCCCTTCACTCGCCGGCATGTCCCCA GGTGCGGGGGCCATGGCCGGCATGGGCTCGGCCGGCGTGGCGGGGATGGGTGCCCACCTGAGCCCCAGCATGAGCCCCA TGGGAGGCCAAGCGGGCTCTATGAACGCCCTGGCCCCCTACACCAACATGAATTCCATGAGCCCCATCTATGGGCAATC CAACCTCAACCGCTCGCGGGACCCCAAGACGTACCGGCGGAGCTACACGCACGCCAAGCCCCCCTACTCCTACATCTCG CTCATCACCATGGCCATCCAGCAGTCGCCCAACAAGATGCTGACGCTGAGCGAGATCTACCAGTGGATCATGGACCTCT TCCCCTTCTACCGCCAGAACCAGCAACGCTGGCAGAACAGCATCCGCCACTCGCTTTCCTTCAATGACTGCTTCCTCAA GGTGCCCCGCTCCCCAGACAAGCCGGGCAAAGGCTCCTTCTGGACGCTGCACCCCGACTCGGGCAACATGTTTGAGAAC GGCTGCTACCTGCGGCGCCAGAAGCGCTTCAAGTGTGAGAAGCAGCTGGCGACCAAGGACGGCGGCGGGGGCAAGAAGG GGCCGGGGCAGCCCCCCAGCCAGCCCCTGGGGGAGGGCAGCTCCTCGGGGGGCTCCGAGGGCTCGGCGGGAGCTGAGTC ACCAGCGAGTGCCTCGCCATGCCGGGACCACAAGCGTGCCCTGGCCGAGCTGAAGGGTGCGGCGGCGGGGCCGAGTCCC GGGGAGCCGTCGGCGGCCTCTCCAGCGCAGCACCTGCTGGCCCCGCCGCACGCCGGGCTGCCCCACGACGCCCACCTCA AGCCCGAGCACCACTACGCCTTCAACCACCCCTTCTCCATCAACAACCTGATGTCGTCCTCCGAGCAGCAGCACCACCA CCACCCGCACCACCACCACCACCCCTCGCACAAAATGGACCTCAAGGCCTACGAGCAGGTGATGCACTACTCGGGCTAC GCCTCGCCCGTGCCCGCCAGCCTGGCCATGGGGCCCGTAACGAACAAAAACCCATTGGAGTCCTCCCCTTTGGCCGGAG AGACTTCTTACTACCAAGGTGTGTATTCCCGGCCCATCATGAACTCCTCCTAA
Citation Chapman SC, Schubert FR, Schoenwolf GC, Lumsden A. Analysis of spatial and temporal gene expression patterns in blastula and gastrula stage chick embryos. Dev Biol. 2002 May 1;245(1):187-99. Copyright 2002 Elsevier Science (USA). All rights reserved.
Entry 4 GEISHA Id Hnf3β.Abe.2006 Data Source Publication Complete cDNA Template Probe show TTAATGGCTGATCTGGGAGAGACAGAGCACCTGTAGACCAGGCATAATAATTGTACGCTAGAAGATGCAGAAGTCCTGC CAGTAACTAAAAGAGGGAGTCCATCTGCATCTTCTAGCGTACAAATATTATGCCTGGTCTACAGGTGCTCTGTCTCTCC CAGATCAGCCATTAACTGAACCCCCTGGTGGCCTCAGAACGGAATTCCGGAATTCCACCGAGGGAAAAGGTCGGTGCCG CGCTGCCCCGCCTGGTGCCCGGGCAGGTACCTGAGGCAGAGCCGCGGGAAGGCATGAGGCAGAGCCGGGCCAGGGCCGG GAGGAAGGCGGCCTGAGGCCGAGCAGCCGCGGGGAGAAAGTATGCTGGGAGCGGTGAAAATGGAAGGCCATGAGCACAC GGACTGGAGCAACTACTACGGGGAGCCCGAGAGCTACTCCTCGGTGAGCAACATGAACGCGGGGCTGGGCATGAACAGC ATGAACACGTACATGACCATGTCGGCCATGAGCACCACGGCCAACATGACGGCAGCCACCTCCATGAACATGTCCTACG CCAACACAGGCATGAGCCCTTCACTCGCCGGCATGTCCCCAGGTGCGGGGGCCATGGCCGGCATGGGCTCGGCCGGCGT GGCGGGGATGGGTGCCCACCTGAGCCCCAGCATGAGCCCCATGGGAGGCCAAGCGGGCTCTATGAACGCCCTGGCCCCC TACACCAACATGAATTCCATGAGCCCCATCTATGGGCAATCCAACCTCAACCGCTCGCGGGACCCCAAGACGTACCGGA GGAGCTACACGCACGCCAAGCCCCCCTACTCCTACATCTCGCTCATCACCATGGCCATCCAGCAGTCGCCCAACAAGAT GCTGACGCTGAGCGAGATCTACCAGTGGATCATGGACCTCTTCCCCTTCTACCGCCAGAACCAGCAACGCTGGCAGAAC AGCATCCGCCACTCGCTTTCCTTCAATGACTGCTTCCTCAAGGTGCCCCGCTCCCCAGACAAGCCGGGCAAAGGCTCCT TCTGGACGCTGCACCCCGACTCGGGCAACATGTTTGAGAACGGCTGCTACCTGCGGCGCCAGAAGCGCTTCAAGTGTGA GAAGCAGCTGGCGACCAAGGACGGCGGCGGGGGCAAGAAGGGGCCGGGGCAGCCCCCCAGCCAGCCCCTGGGGGAGGGC AGCTCCTCGGGGGGCTCCGAGGGCTCGGCGGGAGCTGAGTCACCAGCGAGTGCCTCGCCATGCCGGGACAACAAGCGTG CCCTGGCCGAGCTGAAGGGTGCGGCGGCGGGGCCGAGTCCCGGGGAGCCGTCGGCGGCCTCTCCAGCGCATCACCTGCT GGCCCCGCCGCACGCCGGGCTGCCCCACGACGCCCACCTCAAGCCCGAGCACCACTACGCCTTCAACCACCCCTTCTCC ATCAACAACCTGATGTCGTCCTCCGAGCAGCAGCACCACCACCACCCGCACCACCACCACCACCCCTCGCACAAAATGG ACCTCAAGGCCTACGAGCAGGTGATGCACTACTCGGGCTACGCCTCGCCCGTGCCCGCCAGCCTGGCCATGGGGCCCGT AACGAACAAAAACCCATTGGAGTCCTCCCCTTTGGCCGGAGAGACTTCTTACTACCAAGGTGTGTATTCCCGGCCCATC ATGAACTCCTCCTAAAGGCAAAGGGGGAAAAACCCCCCCACCCCGCGCGGTCCCCTAGCAGCGTGATGGACTGTGAGCG CTGCCGAGCACGGTACCTACCCATATAGCTATCTATCTAGTTTTTTGTTTTGTTCCCTGCTGGCTCCAGGTGGTTGCAT CCACACGGGGAGCAGCGGGCGCACCTCTGCCTGGCACCCCCTAACCCTGACCCTGCGGTCCCCTCGGTTTGCCTTGCGG GGTGGTTCGGTTTGGTGGTGGGGGGTGTAGGGGAGAGGGTATTTTCTGTTGGGGCTGGTTTCTTTATTTTCGTTGTCGT TGTCGCAAGGAGGTCTAAATATATCTATTTTTTTGTGTGGAAGTGATGGGGAAAAGAGAAAAACAAACAGACAAAAATG GACGCAAAGAAAACGAAGCCCTCGTTCGGTGGGAAATCCGTGCGAGTTTGGGATCTGAGGATGGGAAGTCTTGTAAATT GTACAAAGTCGAC
Citation Abe Y, Chen W, Huang W, Nishino M, Li YP.
CNBP regulates forebrain formation at organogenesis stage in chick embryos. Dev Biol. 2006 Jul 1;295(1):116-27. Epub 2006 Apr 19. Copyright Reprinted from Developmental Biology, 295, Yoko Abea, Wei Chena, Wei Huangc, Mizuho Nishinod and Yi-Ping Li, CNBP regulates forebrain formation at organogenesis stage in chick embryos, 116-127, Copyright 2006, with permission from Elsevier.
Copyright © 2006 Elsevier B.V. All rights reserved. Comments Authors said: En1 and Hnf3β cDNA were linearized and transcribed with T7-RNA polymerase. As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #AF150749)
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 19 stage 19
Forebrain Head Mesenchyme
Entry 5 GEISHA Id Hnf3b.Chapman.2008 Data Source GEISHA ISH Analysis Complete cDNA Template Probe show CGGTGAGCAACATGAACGCGGGGCTGGGCATGAACAGCATGAACACGTACATGACCATGTCGGCCATGAGCACCACGGC CAACATGACGGCAGCCACCTCCATGAACATGTCCTACGCCAACACGGGCATGAGCCCTTCACTCGCCGGCATGTCCCCA GGTGCGGGGGCCATGGCCGGCATGGGCTCGGCCGGCGTGGCGGGGATGGGTGCCCACCTGAGCCCCAGCATGAGCCCCA TGGGAGGCCAAGCGGGCTCTATGAACGCCCTGGCCCCCTACACCAACATGAATTCCATGAGCCCCATCTATGGGCAATC CAACCTCAACCGCTCGCGGGACCCCAAGACGTACCGGCGGAGCTACACGCACGCCAAGCCCCCCTACTCCTACATCTCG CTCATCACCATGGCCATCCAGCAGTCGCCCAACAAGATGCTGACGCTGAGCGAGATCTACCAGTGGATCATGGACCTCT TCCCCTTCTACCGCCAGAACCAGCAACGCTGGCAGAACAGCATCCGCCACTCGCTTTCCTTCAATGACTGCTTCCTCAA GGTGCCCCGCTCCCCAGACAAGCCGGGCAAAGGCTCCTTCTGGACGCTGCACCCCGACTCGGGCAACATGTTTGAGAAC GGCTGCTACCTGCGGCGCCAGAAGCGCTTCAAGTGTGAGAAGCAGCTGGCGACCAAGGACGGCGGCGGGGGCAAGAAGG GGCCGGGGCAGCCCCCCAGCCAGCCCCTGGGGGAGGGCAGCTCCTCGGGGGGCTCCGAGGGCTCGGCGGGAGCTGAGTC ACCAGCGAGTGCCTCGCCATGCCGGGACCACAAGCGTGCCCTGGCCGAGCTGAAGGGTGCGGCGGCGGGGCCGAGTCCC GGGGAGCCGTCGGCGGCCTCTCCAGCGCAGCACCTGCTGGCCCCGCCGCACGCCGGGCTGCCCCACGACGCCCACCTCA AGCCCGAGCACCACTACGCCTTCAACCACCCCTTCTCCATCAACAACCTGATGTCGTCCTCCGAGCAGCAGCACCACCA CCACCCGCACCACCACCACCACCCCTCGCACAAAATGGACCTCAAGGCCTACGAGCAGGTGATGCACTACTCGGGCTAC GCCTCGCCCGTGCCCGCCAGCCTGGCCATGGGGCCCGTAACGAACAAAAACCCATTGGAGTCCTCCCCTTTGGCCGGAG AGACTTCTTACTACCAAGGTGTGTATTCCCGGCCCATCATGAACTCCTCCTAA
Comments Images Provided by Susan Chapman
Entry 6 GEISHA Id FOXA2.Agarwala.2005 Data Source Publication Complete cDNA Template Probe show TTAATGGCTGATCTGGGAGAGACAGAGCACCTGTAGACCAGGCATAATAATTGTACGCTAGAAGATGCAGAAGTCCTGC CAGTAACTAAAAGAGGGAGTCCATCTGCATCTTCTAGCGTACAAATATTATGCCTGGTCTACAGGTGCTCTGTCTCTCC CAGATCAGCCATTAACTGAACCCCCTGGTGGCCTCAGAACGGAATTCCGGAATTCCACCGAGGGAAAAGGTCGGTGCCG CGCTGCCCCGCCTGGTGCCCGGGCAGGTACCTGAGGCAGAGCCGCGGGAAGGCATGAGGCAGAGCCGGGCCAGGGCCGG GAGGAAGGCGGCCTGAGGCCGAGCAGCCGCGGGGAGAAAGTATGCTGGGAGCGGTGAAAATGGAAGGCCATGAGCACAC GGACTGGAGCAACTACTACGGGGAGCCCGAGAGCTACTCCTCGGTGAGCAACATGAACGCGGGGCTGGGCATGAACAGC ATGAACACGTACATGACCATGTCGGCCATGAGCACCACGGCCAACATGACGGCAGCCACCTCCATGAACATGTCCTACG CCAACACAGGCATGAGCCCTTCACTCGCCGGCATGTCCCCAGGTGCGGGGGCCATGGCCGGCATGGGCTCGGCCGGCGT GGCGGGGATGGGTGCCCACCTGAGCCCCAGCATGAGCCCCATGGGAGGCCAAGCGGGCTCTATGAACGCCCTGGCCCCC TACACCAACATGAATTCCATGAGCCCCATCTATGGGCAATCCAACCTCAACCGCTCGCGGGACCCCAAGACGTACCGGA GGAGCTACACGCACGCCAAGCCCCCCTACTCCTACATCTCGCTCATCACCATGGCCATCCAGCAGTCGCCCAACAAGAT GCTGACGCTGAGCGAGATCTACCAGTGGATCATGGACCTCTTCCCCTTCTACCGCCAGAACCAGCAACGCTGGCAGAAC AGCATCCGCCACTCGCTTTCCTTCAATGACTGCTTCCTCAAGGTGCCCCGCTCCCCAGACAAGCCGGGCAAAGGCTCCT TCTGGACGCTGCACCCCGACTCGGGCAACATGTTTGAGAACGGCTGCTACCTGCGGCGCCAGAAGCGCTTCAAGTGTGA GAAGCAGCTGGCGACCAAGGACGGCGGCGGGGGCAAGAAGGGGCCGGGGCAGCCCCCCAGCCAGCCCCTGGGGGAGGGC AGCTCCTCGGGGGGCTCCGAGGGCTCGGCGGGAGCTGAGTCACCAGCGAGTGCCTCGCCATGCCGGGACAACAAGCGTG CCCTGGCCGAGCTGAAGGGTGCGGCGGCGGGGCCGAGTCCCGGGGAGCCGTCGGCGGCCTCTCCAGCGCATCACCTGCT GGCCCCGCCGCACGCCGGGCTGCCCCACGACGCCCACCTCAAGCCCGAGCACCACTACGCCTTCAACCACCCCTTCTCC ATCAACAACCTGATGTCGTCCTCCGAGCAGCAGCACCACCACCACCCGCACCACCACCACCACCCCTCGCACAAAATGG ACCTCAAGGCCTACGAGCAGGTGATGCACTACTCGGGCTACGCCTCGCCCGTGCCCGCCAGCCTGGCCATGGGGCCCGT AACGAACAAAAACCCATTGGAGTCCTCCCCTTTGGCCGGAGAGACTTCTTACTACCAAGGTGTGTATTCCCGGCCCATC ATGAACTCCTCCTAAAGGCAAAGGGGGAAAAACCCCCCCACCCCGCGCGGTCCCCTAGCAGCGTGATGGACTGTGAGCG CTGCCGAGCACGGTACCTACCCATATAGCTATCTATCTAGTTTTTTGTTTTGTTCCCTGCTGGCTCCAGGTGGTTGCAT CCACACGGGGAGCAGCGGGCGCACCTCTGCCTGGCACCCCCTAACCCTGACCCTGCGGTCCCCTCGGTTTGCCTTGCGG GGTGGTTCGGTTTGGTGGTGGGGGGTGTAGGGGAGAGGGTATTTTCTGTTGGGGCTGGTTTCTTTATTTTCGTTGTCGT TGTCGCAAGGAGGTCTAAATATATCTATTTTTTTGTGTGGAAGTGATGGGGAAAAGAGAAAAACAAACAGACAAAAATG GACGCAAAGAAAACGAAGCCCTCGTTCGGTGGGAAATCCGTGCGAGTTTGGGATCTGAGGATGGGAAGTCTTGTAAATT GTACAAAGTCGAC
Citation Agarwala S, Aglyamova GV, Marma AK, Fallon JF, Ragsdale CW. Differential susceptibility of midbrain and spinal cord patterning to floor plate defects in the talpid2 mutant. Dev Biol. 2005 Dec 1;288(1):206-20. Epub 2005 Oct 21. Copyright Copyright © 2005 Elsevier Inc. All rights reserved. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204770).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 25-26 stage 26
Midbrain
Entry 7 GEISHA Id HNF-3BETA.Foley.2000 Data Source Publication Complete cDNA Template Probe show TTAATGGCTGATCTGGGAGAGACAGAGCACCTGTAGACCAGGCATAATAATTGTACGCTAGAAGATGCAGAAGTCCTGC CAGTAACTAAAAGAGGGAGTCCATCTGCATCTTCTAGCGTACAAATATTATGCCTGGTCTACAGGTGCTCTGTCTCTCC CAGATCAGCCATTAACTGAACCCCCTGGTGGCCTCAGAACGGAATTCCGGAATTCCACCGAGGGAAAAGGTCGGTGCCG CGCTGCCCCGCCTGGTGCCCGGGCAGGTACCTGAGGCAGAGCCGCGGGAAGGCATGAGGCAGAGCCGGGCCAGGGCCGG GAGGAAGGCGGCCTGAGGCCGAGCAGCCGCGGGGAGAAAGTATGCTGGGAGCGGTGAAAATGGAAGGCCATGAGCACAC GGACTGGAGCAACTACTACGGGGAGCCCGAGAGCTACTCCTCGGTGAGCAACATGAACGCGGGGCTGGGCATGAACAGC ATGAACACGTACATGACCATGTCGGCCATGAGCACCACGGCCAACATGACGGCAGCCACCTCCATGAACATGTCCTACG CCAACACAGGCATGAGCCCTTCACTCGCCGGCATGTCCCCAGGTGCGGGGGCCATGGCCGGCATGGGCTCGGCCGGCGT GGCGGGGATGGGTGCCCACCTGAGCCCCAGCATGAGCCCCATGGGAGGCCAAGCGGGCTCTATGAACGCCCTGGCCCCC TACACCAACATGAATTCCATGAGCCCCATCTATGGGCAATCCAACCTCAACCGCTCGCGGGACCCCAAGACGTACCGGA GGAGCTACACGCACGCCAAGCCCCCCTACTCCTACATCTCGCTCATCACCATGGCCATCCAGCAGTCGCCCAACAAGAT GCTGACGCTGAGCGAGATCTACCAGTGGATCATGGACCTCTTCCCCTTCTACCGCCAGAACCAGCAACGCTGGCAGAAC AGCATCCGCCACTCGCTTTCCTTCAATGACTGCTTCCTCAAGGTGCCCCGCTCCCCAGACAAGCCGGGCAAAGGCTCCT TCTGGACGCTGCACCCCGACTCGGGCAACATGTTTGAGAACGGCTGCTACCTGCGGCGCCAGAAGCGCTTCAAGTGTGA GAAGCAGCTGGCGACCAAGGACGGCGGCGGGGGCAAGAAGGGGCCGGGGCAGCCCCCCAGCCAGCCCCTGGGGGAGGGC AGCTCCTCGGGGGGCTCCGAGGGCTCGGCGGGAGCTGAGTCACCAGCGAGTGCCTCGCCATGCCGGGACAACAAGCGTG CCCTGGCCGAGCTGAAGGGTGCGGCGGCGGGGCCGAGTCCCGGGGAGCCGTCGGCGGCCTCTCCAGCGCATCACCTGCT GGCCCCGCCGCACGCCGGGCTGCCCCACGACGCCCACCTCAAGCCCGAGCACCACTACGCCTTCAACCACCCCTTCTCC ATCAACAACCTGATGTCGTCCTCCGAGCAGCAGCACCACCACCACCCGCACCACCACCACCACCCCTCGCACAAAATGG ACCTCAAGGCCTACGAGCAGGTGATGCACTACTCGGGCTACGCCTCGCCCGTGCCCGCCAGCCTGGCCATGGGGCCCGT AACGAACAAAAACCCATTGGAGTCCTCCCCTTTGGCCGGAGAGACTTCTTACTACCAAGGTGTGTATTCCCGGCCCATC ATGAACTCCTCCTAAAGGCAAAGGGGGAAAAACCCCCCCACCCCGCGCGGTCCCCTAGCAGCGTGATGGACTGTGAGCG CTGCCGAGCACGGTACCTACCCATATAGCTATCTATCTAGTTTTTTGTTTTGTTCCCTGCTGGCTCCAGGTGGTTGCAT CCACACGGGGAGCAGCGGGCGCACCTCTGCCTGGCACCCCCTAACCCTGACCCTGCGGTCCCCTCGGTTTGCCTTGCGG GGTGGTTCGGTTTGGTGGTGGGGGGTGTAGGGGAGAGGGTATTTTCTGTTGGGGCTGGTTTCTTTATTTTCGTTGTCGT TGTCGCAAGGAGGTCTAAATATATCTATTTTTTTGTGTGGAAGTGATGGGGAAAAGAGAAAAACAAACAGACAAAAATG GACGCAAAGAAAACGAAGCCCTCGTTCGGTGGGAAATCCGTGCGAGTTTGGGATCTGAGGATGGGAAGTCTTGTAAATT GTACAAAGTCGAC
Citation Foley AC, Skromne I, Stern CD. Reconciling different models of forebrain induction and patterning: a dual role for the hypoblast. Development. 2000 Sep;127(17):3839-54.
Copyright Printed in Great Britain © The Company of Biologists Limited 2000 Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204770).
Entry 8 GEISHA Id HNF3-B.Levin.1995 Data Source Publication Complete cDNA Template Probe show TTAATGGCTGATCTGGGAGAGACAGAGCACCTGTAGACCAGGCATAATAATTGTACGCTAGAAGATGCAGAAGTCCTGC CAGTAACTAAAAGAGGGAGTCCATCTGCATCTTCTAGCGTACAAATATTATGCCTGGTCTACAGGTGCTCTGTCTCTCC CAGATCAGCCATTAACTGAACCCCCTGGTGGCCTCAGAACGGAATTCCGGAATTCCACCGAGGGAAAAGGTCGGTGCCG CGCTGCCCCGCCTGGTGCCCGGGCAGGTACCTGAGGCAGAGCCGCGGGAAGGCATGAGGCAGAGCCGGGCCAGGGCCGG GAGGAAGGCGGCCTGAGGCCGAGCAGCCGCGGGGAGAAAGTATGCTGGGAGCGGTGAAAATGGAAGGCCATGAGCACAC GGACTGGAGCAACTACTACGGGGAGCCCGAGAGCTACTCCTCGGTGAGCAACATGAACGCGGGGCTGGGCATGAACAGC ATGAACACGTACATGACCATGTCGGCCATGAGCACCACGGCCAACATGACGGCAGCCACCTCCATGAACATGTCCTACG CCAACACAGGCATGAGCCCTTCACTCGCCGGCATGTCCCCAGGTGCGGGGGCCATGGCCGGCATGGGCTCGGCCGGCGT GGCGGGGATGGGTGCCCACCTGAGCCCCAGCATGAGCCCCATGGGAGGCCAAGCGGGCTCTATGAACGCCCTGGCCCCC TACACCAACATGAATTCCATGAGCCCCATCTATGGGCAATCCAACCTCAACCGCTCGCGGGACCCCAAGACGTACCGGA GGAGCTACACGCACGCCAAGCCCCCCTACTCCTACATCTCGCTCATCACCATGGCCATCCAGCAGTCGCCCAACAAGAT GCTGACGCTGAGCGAGATCTACCAGTGGATCATGGACCTCTTCCCCTTCTACCGCCAGAACCAGCAACGCTGGCAGAAC AGCATCCGCCACTCGCTTTCCTTCAATGACTGCTTCCTCAAGGTGCCCCGCTCCCCAGACAAGCCGGGCAAAGGCTCCT TCTGGACGCTGCACCCCGACTCGGGCAACATGTTTGAGAACGGCTGCTACCTGCGGCGCCAGAAGCGCTTCAAGTGTGA GAAGCAGCTGGCGACCAAGGACGGCGGCGGGGGCAAGAAGGGGCCGGGGCAGCCCCCCAGCCAGCCCCTGGGGGAGGGC AGCTCCTCGGGGGGCTCCGAGGGCTCGGCGGGAGCTGAGTCACCAGCGAGTGCCTCGCCATGCCGGGACAACAAGCGTG CCCTGGCCGAGCTGAAGGGTGCGGCGGCGGGGCCGAGTCCCGGGGAGCCGTCGGCGGCCTCTCCAGCGCATCACCTGCT GGCCCCGCCGCACGCCGGGCTGCCCCACGACGCCCACCTCAAGCCCGAGCACCACTACGCCTTCAACCACCCCTTCTCC ATCAACAACCTGATGTCGTCCTCCGAGCAGCAGCACCACCACCACCCGCACCACCACCACCACCCCTCGCACAAAATGG ACCTCAAGGCCTACGAGCAGGTGATGCACTACTCGGGCTACGCCTCGCCCGTGCCCGCCAGCCTGGCCATGGGGCCCGT AACGAACAAAAACCCATTGGAGTCCTCCCCTTTGGCCGGAGAGACTTCTTACTACCAAGGTGTGTATTCCCGGCCCATC ATGAACTCCTCCTAAAGGCAAAGGGGGAAAAACCCCCCCACCCCGCGCGGTCCCCTAGCAGCGTGATGGACTGTGAGCG CTGCCGAGCACGGTACCTACCCATATAGCTATCTATCTAGTTTTTTGTTTTGTTCCCTGCTGGCTCCAGGTGGTTGCAT CCACACGGGGAGCAGCGGGCGCACCTCTGCCTGGCACCCCCTAACCCTGACCCTGCGGTCCCCTCGGTTTGCCTTGCGG GGTGGTTCGGTTTGGTGGTGGGGGGTGTAGGGGAGAGGGTATTTTCTGTTGGGGCTGGTTTCTTTATTTTCGTTGTCGT TGTCGCAAGGAGGTCTAAATATATCTATTTTTTTGTGTGGAAGTGATGGGGAAAAGAGAAAAACAAACAGACAAAAATG GACGCAAAGAAAACGAAGCCCTCGTTCGGTGGGAAATCCGTGCGAGTTTGGGATCTGAGGATGGGAAGTCTTGTAAATT GTACAAAGTCGAC
Citation Levin M, Johnson RL, Stern CD, Kuehn M, Tabin C (1995). A molecular pathway determining left-right asymmetry in chick embryogenesis. Cell. 1995 Sep 8;82(5):803-14. Copyright Copyright © 1995 Elsevier Inc. All Rights reserved. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # NM_204770.1)
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 4-6 stage 4
stage 4
Hensen's Node 31-44 stage 44
Entry 9 GEISHA Id FOXA2.Agarwala.2001 Data Source Publication Complete cDNA Template Probe show TTAATGGCTGATCTGGGAGAGACAGAGCACCTGTAGACCAGGCATAATAATTGTACGCTAGAAGATGCAGAAGTCCTGC CAGTAACTAAAAGAGGGAGTCCATCTGCATCTTCTAGCGTACAAATATTATGCCTGGTCTACAGGTGCTCTGTCTCTCC CAGATCAGCCATTAACTGAACCCCCTGGTGGCCTCAGAACGGAATTCCGGAATTCCACCGAGGGAAAAGGTCGGTGCCG CGCTGCCCCGCCTGGTGCCCGGGCAGGTACCTGAGGCAGAGCCGCGGGAAGGCATGAGGCAGAGCCGGGCCAGGGCCGG GAGGAAGGCGGCCTGAGGCCGAGCAGCCGCGGGGAGAAAGTATGCTGGGAGCGGTGAAAATGGAAGGCCATGAGCACAC GGACTGGAGCAACTACTACGGGGAGCCCGAGAGCTACTCCTCGGTGAGCAACATGAACGCGGGGCTGGGCATGAACAGC ATGAACACGTACATGACCATGTCGGCCATGAGCACCACGGCCAACATGACGGCAGCCACCTCCATGAACATGTCCTACG CCAACACAGGCATGAGCCCTTCACTCGCCGGCATGTCCCCAGGTGCGGGGGCCATGGCCGGCATGGGCTCGGCCGGCGT GGCGGGGATGGGTGCCCACCTGAGCCCCAGCATGAGCCCCATGGGAGGCCAAGCGGGCTCTATGAACGCCCTGGCCCCC TACACCAACATGAATTCCATGAGCCCCATCTATGGGCAATCCAACCTCAACCGCTCGCGGGACCCCAAGACGTACCGGA GGAGCTACACGCACGCCAAGCCCCCCTACTCCTACATCTCGCTCATCACCATGGCCATCCAGCAGTCGCCCAACAAGAT GCTGACGCTGAGCGAGATCTACCAGTGGATCATGGACCTCTTCCCCTTCTACCGCCAGAACCAGCAACGCTGGCAGAAC AGCATCCGCCACTCGCTTTCCTTCAATGACTGCTTCCTCAAGGTGCCCCGCTCCCCAGACAAGCCGGGCAAAGGCTCCT TCTGGACGCTGCACCCCGACTCGGGCAACATGTTTGAGAACGGCTGCTACCTGCGGCGCCAGAAGCGCTTCAAGTGTGA GAAGCAGCTGGCGACCAAGGACGGCGGCGGGGGCAAGAAGGGGCCGGGGCAGCCCCCCAGCCAGCCCCTGGGGGAGGGC AGCTCCTCGGGGGGCTCCGAGGGCTCGGCGGGAGCTGAGTCACCAGCGAGTGCCTCGCCATGCCGGGACAACAAGCGTG CCCTGGCCGAGCTGAAGGGTGCGGCGGCGGGGCCGAGTCCCGGGGAGCCGTCGGCGGCCTCTCCAGCGCATCACCTGCT GGCCCCGCCGCACGCCGGGCTGCCCCACGACGCCCACCTCAAGCCCGAGCACCACTACGCCTTCAACCACCCCTTCTCC ATCAACAACCTGATGTCGTCCTCCGAGCAGCAGCACCACCACCACCCGCACCACCACCACCACCCCTCGCACAAAATGG ACCTCAAGGCCTACGAGCAGGTGATGCACTACTCGGGCTACGCCTCGCCCGTGCCCGCCAGCCTGGCCATGGGGCCCGT AACGAACAAAAACCCATTGGAGTCCTCCCCTTTGGCCGGAGAGACTTCTTACTACCAAGGTGTGTATTCCCGGCCCATC ATGAACTCCTCCTAAAGGCAAAGGGGGAAAAACCCCCCCACCCCGCGCGGTCCCCTAGCAGCGTGATGGACTGTGAGCG CTGCCGAGCACGGTACCTACCCATATAGCTATCTATCTAGTTTTTTGTTTTGTTCCCTGCTGGCTCCAGGTGGTTGCAT CCACACGGGGAGCAGCGGGCGCACCTCTGCCTGGCACCCCCTAACCCTGACCCTGCGGTCCCCTCGGTTTGCCTTGCGG GGTGGTTCGGTTTGGTGGTGGGGGGTGTAGGGGAGAGGGTATTTTCTGTTGGGGCTGGTTTCTTTATTTTCGTTGTCGT TGTCGCAAGGAGGTCTAAATATATCTATTTTTTTGTGTGGAAGTGATGGGGAAAAGAGAAAAACAAACAGACAAAAATG GACGCAAAGAAAACGAAGCCCTCGTTCGGTGGGAAATCCGTGCGAGTTTGGGATCTGAGGATGGGAAGTCTTGTAAATT GTACAAAGTCGAC
Citation Agarwala S, Sanders TA, Ragsdale CW. Sonic hedgehog control of size and shape in midbrain pattern formation. Science. 2001 Mar 16;291(5511):2147-50. Epub 2001 Mar 1. Copyright © 2011 American Association for the Advancement of Science. All Rights Reserved. Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc NM_204770.1).
Entry 10 GEISHA Id FOXA2.GarciaCampmany.2007 Data Source Publication Complete cDNA Template Probe show TTAATGGCTGATCTGGGAGAGACAGAGCACCTGTAGACCAGGCATAATAATTGTACGCTAGAAGATGCAGAAGTCCTGC CAGTAACTAAAAGAGGGAGTCCATCTGCATCTTCTAGCGTACAAATATTATGCCTGGTCTACAGGTGCTCTGTCTCTCC CAGATCAGCCATTAACTGAACCCCCTGGTGGCCTCAGAACGGAATTCCGGAATTCCACCGAGGGAAAAGGTCGGTGCCG CGCTGCCCCGCCTGGTGCCCGGGCAGGTACCTGAGGCAGAGCCGCGGGAAGGCATGAGGCAGAGCCGGGCCAGGGCCGG GAGGAAGGCGGCCTGAGGCCGAGCAGCCGCGGGGAGAAAGTATGCTGGGAGCGGTGAAAATGGAAGGCCATGAGCACAC GGACTGGAGCAACTACTACGGGGAGCCCGAGAGCTACTCCTCGGTGAGCAACATGAACGCGGGGCTGGGCATGAACAGC ATGAACACGTACATGACCATGTCGGCCATGAGCACCACGGCCAACATGACGGCAGCCACCTCCATGAACATGTCCTACG CCAACACAGGCATGAGCCCTTCACTCGCCGGCATGTCCCCAGGTGCGGGGGCCATGGCCGGCATGGGCTCGGCCGGCGT GGCGGGGATGGGTGCCCACCTGAGCCCCAGCATGAGCCCCATGGGAGGCCAAGCGGGCTCTATGAACGCCCTGGCCCCC TACACCAACATGAATTCCATGAGCCCCATCTATGGGCAATCCAACCTCAACCGCTCGCGGGACCCCAAGACGTACCGGA GGAGCTACACGCACGCCAAGCCCCCCTACTCCTACATCTCGCTCATCACCATGGCCATCCAGCAGTCGCCCAACAAGAT GCTGACGCTGAGCGAGATCTACCAGTGGATCATGGACCTCTTCCCCTTCTACCGCCAGAACCAGCAACGCTGGCAGAAC AGCATCCGCCACTCGCTTTCCTTCAATGACTGCTTCCTCAAGGTGCCCCGCTCCCCAGACAAGCCGGGCAAAGGCTCCT TCTGGACGCTGCACCCCGACTCGGGCAACATGTTTGAGAACGGCTGCTACCTGCGGCGCCAGAAGCGCTTCAAGTGTGA GAAGCAGCTGGCGACCAAGGACGGCGGCGGGGGCAAGAAGGGGCCGGGGCAGCCCCCCAGCCAGCCCCTGGGGGAGGGC AGCTCCTCGGGGGGCTCCGAGGGCTCGGCGGGAGCTGAGTCACCAGCGAGTGCCTCGCCATGCCGGGACAACAAGCGTG CCCTGGCCGAGCTGAAGGGTGCGGCGGCGGGGCCGAGTCCCGGGGAGCCGTCGGCGGCCTCTCCAGCGCATCACCTGCT GGCCCCGCCGCACGCCGGGCTGCCCCACGACGCCCACCTCAAGCCCGAGCACCACTACGCCTTCAACCACCCCTTCTCC ATCAACAACCTGATGTCGTCCTCCGAGCAGCAGCACCACCACCACCCGCACCACCACCACCACCCCTCGCACAAAATGG ACCTCAAGGCCTACGAGCAGGTGATGCACTACTCGGGCTACGCCTCGCCCGTGCCCGCCAGCCTGGCCATGGGGCCCGT AACGAACAAAAACCCATTGGAGTCCTCCCCTTTGGCCGGAGAGACTTCTTACTACCAAGGTGTGTATTCCCGGCCCATC ATGAACTCCTCCTAAAGGCAAAGGGGGAAAAACCCCCCCACCCCGCGCGGTCCCCTAGCAGCGTGATGGACTGTGAGCG CTGCCGAGCACGGTACCTACCCATATAGCTATCTATCTAGTTTTTTGTTTTGTTCCCTGCTGGCTCCAGGTGGTTGCAT CCACACGGGGAGCAGCGGGCGCACCTCTGCCTGGCACCCCCTAACCCTGACCCTGCGGTCCCCTCGGTTTGCCTTGCGG GGTGGTTCGGTTTGGTGGTGGGGGGTGTAGGGGAGAGGGTATTTTCTGTTGGGGCTGGTTTCTTTATTTTCGTTGTCGT TGTCGCAAGGAGGTCTAAATATATCTATTTTTTTGTGTGGAAGTGATGGGGAAAAGAGAAAAACAAACAGACAAAAATG GACGCAAAGAAAACGAAGCCCTCGTTCGGTGGGAAATCCGTGCGAGTTTGGGATCTGAGGATGGGAAGTCTTGTAAATT GTACAAAGTCGAC
Citation García-Campmany L, Martí E. The TGFbeta intracellular effector Smad3 regulates neuronal differentiation and cell fate specification in the developing spinal cord. Development. 2007 Jan;134(1):65-75. Epub 2006 Nov 30. Copyright Copyright by the authors. Published by the Company of Biologists Ltd. Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_204770.1
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 19-20 stage 20
stage 20
Spinal Cord
Entry 11 GEISHA Id FOXA2.Anderson.2021 Data Source Direct Submission Complete cDNA Template Probe show GCGCTGCCCCGCCTGGTGCCCGGGCAGGTACCTGAGGCAGAGCCGCGGGAAGGCATGAGGCAGAGCCGGGCCAGGGCCG GGAGGAAGGCGGCCTGAGGCCGAGCAGCCGCGGGGAGAAAGTATGCTGGGAGCGGTGAAAATGGAAGGCCATGAGCACA CGGACTGGAGCAACTACTACGGGGAGCCCGAGAGCTACTCCTCGGTGAGCAACATGAACGCGGGGCTGGGCATGAACAG CATGAACACGTACATGACCATGTCGGCCATGAGCACCACGGCCAACATGACGGCAGCCACCTCCATGAACATGTCCTAC GCCAACACAGGCATGAGCCCTTCACTCGCCGGCATGTCCCCAGGTGCGGGGGCCATGGCCGGCATGGGCTCGGCCGGCG TGGCGGGGATGGGTGCCCACCTGAGCCCCAGCATGAGCCCCATGGGAGGCCAAGCGGGCTCTATGAACGCCCTGGCCCC CTACACCAACATGAATTCCATGAGCCCCATCTATGGGCAATCCAACCTCAACCGCTCGCGGGACCCCAAGACGTACCGG CGGAGCTACACGCACGCCAAGCCCCCCTACTCCTACATCTCGCTCATCACCATGGCCATCCAGCAGTCGCCCAACAAGA TGCTGACGCTGAGCGAGATCTACCAGTGGATCATGGACCTCTTCCCCTTCTACCGCCAGAACCAGCAGCGCTGGCAGAA CAGCATCCGCCACTCGCTTTCCTTCAATGACTGCTTCCTCAAGGTGCCCCGCTCCCCAGACAAGCCGGGCAAAGGCTCC TTCTGGACGCTGCACCCCGACTCGGGCAACATGTTTGAGAACGGCTGCTACCTGCGGCGCCAGAAGCGCTTCAAGTGTG AGAAGCAGCTGGCGACCAAGGACGGCGGCGGGGGCAAGAAGGGGCCGGGGCAGCCCCCCAGCCAGCCCCTGGGGGAGGG CAGCTCCTCGGGGGGCTCCGAGGGCTCGGCAGGAGCTGAGTCACCAGCGAGTGCCTCGCCGTGCCGGGACCACAAGCGT GCCCTGGCCGAGCTGAAGGGTGCGGCGGCGGGGCCGAGTCCCGGGGAGCCGTCGGCGGCCTCTCCAGCGCAGCACCTGC TGGCCCCGCCGCACGCCGGGCTGCCCCACGACGCCCACCTCAAGCCCGAGCACCACTACGCCTTCAACCACCCCTTCTC CATCAACAACCTGATGTCGTCCTCCGAGCAGCAGCACCACCACCACCCGCACCACCACCACCACCCCTCGCACAAAATG GACCTCAAGGCCTACGAGCAGGTGATGCACTACTCGGGCTACGCCTCGCCCGTGCCCGCCAGCCTGGCCATGGGGCCCG TAACGAACAAAAACCCATTGGAGTCCTCCCCTTTGGCCGGAGAGACTTCTTACTACCAAGGTGTGTATTCCCGGCCCAT CATGAACTCCTCCTAAAGGCAAAGGGGGAAAAACCCCCCCACCCCGCACGGTCCCCTAGCAGCGTGATGGACTGTGAGC GCTGCCGAGCACGGTACCTACCCATATAGCTATCTATCTATTTTTTGTTTTGTTCCCTGCTGGCTCCAGGTGGTTGCAT CCACATGGGGAGCAGCGGGCGCACCTCGCCTGGCACCCCCTAACCCTGACCCTGCGGTCCCCTCGGTTTGCCTTGCGGG GTGGTTCGGTTTGGTGGGAGGGGGGTGTAGGGGAGAGGGATTTTTCTGTTGGGGCTGGTTTCTTATTTTTTTCGTTGTC GTTGTCGCAAGGAGGTCTAAATATATCTATTTTTTTGTGTGGAAGTGATGGGGAAAAGAGAAAAACAAACAGACAAAAA TGGACGCAAAGAAAACGAAGCCCTCGTTCGGTGGGAAATCCGTGCGAGTTTGGGATCTGAGGATGGAAAGTCTTGTAAA ATTGTACAAAGGGGGAGAAAAAAAAAAACAAAAGAAAACGGGGGAAAAAAAAAGCGAAAAAAAAAAAAGTCAGGATAGA TCGTTGTAATTGAAACAAACGCTTGATGTTACCGGGAGAGTAAACTACTTGGATCTGATTAATTTATCGTTTCTGTATG CTTTATTTATGGCTTATAAATGTGTATTCTGGTAGCGACTAGCCAGGTTGCCACAGAACTCTATTAAAGTGTTATTGGC GGTTTT
Comments Images provided by Claire Anderson. As insufficient information was provided to verify sequence used to synthesize probe, the sequence above was obtained from NCBI (accession number NM_204770.2). Reference paper: A Ruiz i Altaba, M Placzek, M Baldassare, J Dodd, T M Jessell. Early stages of notochord and floor plate development in the chick embryo defined by normal and induced expression of HNF-3 beta. Dev Biol. 1995 Aug;170(2):299-313. doi: 10.1006/dbio.1995.1216.
Mouse Frog Fruit Fly Zebra Finch Zebrafish