GEISHA - A Chicken Embryo Gene Expression Database
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KDM5B
lysine demethylase 5B

Gene
Official SymbolKDM5B
Official Full Namelysine demethylase 5B
CGNC ID51429
also known asJARID1B, lysine-specific demethylase 5B|Jumonji, AT rich interactive domain 1B (RBP2-like)|histone demethylase JARID1B|jumonji/ARID domain-containing protein 1B|lysine (K)-specific demethylase 5B
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Sequence Information
Genomic
RNANM_001031029
PolypeptideNP_001026200
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human10765ENSG00000117139MIM:605393
Mouse75605ENSMUSG00000042207All phenotypic alleles (1):Targeted, other(1) MGI:1922855
Xenopus100488170856239
Zebrafish415256, 327168ENSDARG00000003098, ENSDARG00000057093ZDB-GENE-030424-1, ZDB-GENE-030131-5379ZFIN:ZDB-GENE-030424-1, ZFIN:ZDB-GENE-030131-5379
Gene Ontology
Molecular FunctionDNA binding, histone demethylase activity (H3-dimethyl-K4 specific), more...histone demethylase activity (H3-trimethyl-K4 specific), oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, zinc ion binding
Biological Processhistone H3-K4 demethylation, histone H3-K4 demethylation, trimethyl-H3-K4-specific, more...regulation of transcription, DNA-templated, transcription, DNA-templated
Cellular Componentnucleus
Links to other databases
Entrez Gene421168
Ensembl Gene
KEGGgga:421168
GEISHA IdKDM5B.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerAGGATCCAGCGGCTCAATG
Reverse cDNA Template PrimerTATCTGCGGTGATGTGGGCcDNA Template Length1171
Complete cDNA Template Probeshow
AGGATCCAGCGGCTCAATGAGTTGGAGGCCCAAACCCGCGTGAAGCTGAATTTCCTGGACCAGATTGCGAAGTTCTGGG
AGCTTCAGGGCTGCACGCTGAAAATTCCACACGTGGAGAGGAAGATCCTGGATTTATTTCAGCTTAACAGGCTGGTTGC
AGAGGAAGGAGGGTTTGATGTCGTTTGCAAGGAGAGGAAATGGACCAAAATCGCCACGAGGATGGGCTTTGCTCCTGGC
AAGGCTGTGGGTTCGCACATCCGCGCGCATTACGAGCGAATTCTCTATCCTTACAACTTGTTCCAGTCCGGAGCGAGCC
TGCTGTGTCTGCAGAAGCCGGATCTCACCAGCGACACGAAGGACAAGGAGTACAAACCCCACGACATCCCGCAGAGGCA
GTCGGTGCAGCCGTCCGAGAGCTGCCCTCCCGCGCGCCGAGCGAAGCGCCTGCGGGCCGAGGCAACCAACATTAAAACC
GAATCCGATTCTCCAGAGGTGAGAACGCACAACCTGAGACGCAGGATGGGCTGCGCACCTCCCAAGTGTGAGAACGAAA
AGGAAACGTACAGCGCAGTGAAGCTTGCAGAGAAGAGAGAGCACGCTGGGGAGCAGGAGAGGGACAAAGCCAAAGCCCG
ATCCAAAAAGCCCACCAGTGCTGTGGATTTGTATGTGTGTCTCTTATGTGGCAGTGGTAACGACGAGGACCGTCTCCTG
TTGTGTGATGGCTGTGATGACAGTTACCATACTTTCTGTTTAATTCCACCCCTTCACGATGTTCCCAAAGGGGACTGGA
GGTGCCCCCAGTGTTTGGCTCAGGAGTGCAATAAGCCTCAGGAAGCGTTTGGCTTTGAGCAGGCAGCTCGGGACTACAC
GCTGCGCACCTTCGGGGAGATGGCAGACGCCTTCAAGTCCGACTACTTCAACATGCCAGTCCACATGGTCCCCACTGAG
CTGGTCGAGAAGGAGTTCTGGAGACTCGTTAGCACCATTGAGGAGGACGTCACCGTGGAATACGGAGCTGATATCGCTT
CAAAGGAGTTTGGCAGTGGGTTCCCGGTTAGAGATGGGAAGTTCAAAGTGAGACCAGAGGAGGAGGAGTACCTCGATAG
TGGCTGGAATCTAAACAACATGCCTGTGATGGAGCAGTCTGTTCTTGCCCACATCACCGCAGATAT
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
Epiblast
 
4-6
stage 5
Area Opaca
Epiblast
Primitive Streak
 
7-12
stage 10
Anterior Intestinal Portal
Forebrain
Head Mesenchyme
Hindbrain
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Primitive Streak
Somites
extraembryonic mesoderm
 
13-18
stage 14
stage 17
Blood Islands
Blood Vessels
Ear/Otic Placode
Forebrain
Foregut
Head Mesenchyme
Hindbrain
Lateral Plate Mesoderm
Leg Mesenchyme
Midbrain
Neural Plate/Tube
Notochord
Pharyngeal Arches and Clefts
Somites
Ventricles
Wing Mesenchyme
 
19-24
stage 19
stage 24
stage 24
stage 24
Foregut
Head Mesenchyme
Leg Mesenchyme
Lung
Neural Plate/Tube
Pharyngeal Arches and Clefts
Sclerotome
Spinal Ganglia and Nerves
Widespread Expression
Wing Mesenchyme
 
25-26
stage 26
Forebrain
Foregut
Head Mesenchyme
Hindbrain
Leg Mesenchyme
Lung
Mesonephros
Midbrain
Pharyngeal Arches and Clefts
Sclerotome
Spinal Cord
Spinal Ganglia and Nerves
Wing Mesenchyme
 

Mouse

EmageMGI:1922855
MGI GXDMGI:1922855

Frog

Xenbase856239

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-030424-1, ZDB-GENE-030131-5379
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