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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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LDB2
LIM domain binding 2

Gene

Official Symbol	LDB2
Official Full Name	LIM domain binding 2
CGNC ID	49412
also known as	CLIM-1, LIM domain-binding protein 2\|LDB-2\|LIM domain binding protein CLIM-1\|LIM domain-binding factor CLIM1\|cLdb2\|carboxyl-terminal LIM domain-binding protein 1
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_204829
Polypeptide	NP_990160

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	37837			FBgn0013764
Human	9079	ENSG00000169744		MIM:603450
Mouse	16826	ENSMUSG00000039706	All phenotypic alleles (1):Targeted, knock-out(1)	MGI:894670
Xenopus	100491396, 734228			490278
Zebrafish	30577, 30578	ENSDARG00000019579, ENSDARG00000034896	ZDB-GENE-990415-136, ZDB-GENE-990415-137	ZFIN:ZDB-GENE-990415-136, ZFIN:ZDB-GENE-990415-137

Gene Ontology

Molecular Function	LIM domain binding, transcription cofactor activity
Biological Process	biological_process
Cellular Component	nucleus

Links to other databases

Entrez Gene	395631
Ensembl Gene	ENSGALG00000014485
KEGG	gga:395631

Entry 1

GEISHA Id	LDB2.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	TGGAAGATGGACCAAAGCGATAC
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGGGGGGTTTTCAGATTTAGTCTCCTGG	cDNA Template Length	884
Complete cDNA Template Probe	show TGGAAGATGGACCAAAGCGATACACAATTGGAAGGACCCTCATTCCTCGTTATTTTAGCACTGTCTTTGAAGGAGGTGT AACAGACCTGTATTACATTCTCAAGCACTCAAAAGAGTCATACCACAACTCATCCATCACAGTGGACTGTGATCAATGC ACCATGGTCACTCAGCATGGAAAACCCATGTTTACCAAGGTATGCACAGAAGGACGTCTTATCTTGGAGTTTACTTTTG ATGATCTTATGAGAATAAAAACATGGCACTTTACTATTAGACAATACAGAGAATTAGTCCCACGCAGCATTTTACCCAT GCATGCACAGGACCCTCAGGTGCTGGAGCAGCTGTCCAAAAACATCACTCGAATGGGTCTGACAAACTTCACCCTCAAC TACCTCAGGTTGTGTGTAATACTGGAGCCAATGCAGGAACTGATGTCAAGACACAAAACTTACAATCTAAGTCCTCGAG ACTGCTTGAAGACTTGCTTGTTTCAAAAATGGCAGAGAATGGTGGCCCCACCAGCAGAACCCACAAGACAACCGACAAC CAAACGGAGGAAAAGGAAAAACTCTACCAGCAGCACTTCGAACAGCAGTGCTGGGAACAACGCAAATAGTACCAACAGC AAGAAAAAGTCAGCTGCTGCAAACCTGAGTCTATCAAGTCAGGATGTGATGGTGGTAGGAGAACCAACTCTGATGGGAG GCGAATTTGGAGACGAAGACGAAAGGCTTATCACTAGATTAGAGAATACACAGTATGATGCAGCAAACGGCATGGATGA TGAAGAAGATTTCAACAATTCACCTGCACTGGGAAATAACAGCCCGTGGAACAGCAAACCTCCTGCTAACCAGGAGACT AAATCTGAAAACCCC

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 9

stage 10

Head Mesenchyme

13-18

stage 15

stage 16

Aorta
Blood Vessels
Extraembryonic Blood Vessels
Foregut
Head Mesenchyme
Intermediate Mesoderm
Neural Plate/Tube
Notochord
Sclerotome
Somatic Mesoderm

19-24

stage 23

stage 24

Foregut
Head Mesenchyme
Leg Mesenchyme
Liver
Lung
Mesonephros
Nephric Tubules
Neural Plate/Tube
Pharyngeal Arches and Clefts
Sclerotome
Spinal Ganglia and Nerves
Wing Mesenchyme

25-26

stage 26

Allantois
Cranial PNS
Ear/Otic Placode
Forebrain
Foregut
Heart
Hindgut
Leg Mesenchyme
Liver
Lung
Mesonephros
Myelencephalon
Nasal Placode/Nerve
Pharyngeal Arches and Clefts
Sclerotome
Somatic Mesoderm
Spinal Cord
Spinal Ganglia and Nerves
Wing Mesenchyme

DORSAL MESENTERY

Entry 2

GEISHA Id	LDB2.Anderson.2021	Data Source	Direct Submission
Complete cDNA Template Probe	show TCGGACTGTGATCAATGCACCATGGTCACTCAGCATGGAAAACCCATGTTTACCAAGGTATGCACAGAAGGACGTCTTA TCTTGGAGTTTACTTTTGATGATCTTATGAGAATAAAAACATGGCACTTTACTATTAGACAATACAGAGAATTAGTCCC ACGCAGCATTCTAGCCATGCATGCACAAGACCCTCAGGTGCTGGAGCAGCTGTCCAAAAACATCACTCGAATGGGTCTG ACAAACTTCACCCTCAACTACCTCAGGTTGTGTGTAATACTGGAGCCAATGCAGGAACTGATGTCAAGACACAAAACTT ACAATCTAAGTCCTCGAGACTGCTTGAAGACTTGCTTGTTTCAAAAATGGCAGAGAATGGTGGCCCCACCAGCAGAACC CACAAGACAACCGACAACCAAACGGAGGAAAAGGAAAAACTCTACCAGCAGCACTTCGAACAGCAGTGCTGGGAACAAC GCAAATAGTACCAACAGCAAGAAAAAGTCAGCTGCTGCAAACCTGAGTCTATCAAGTCAGGATGTGATGGTGGTAGGAG AACCAACTCTGATGGGAGGCGAATTTGGAGACGAAGACGAAAGGCTTATCACTAGATTAGAGAATACACAGTATGATGC AGCAAACGGCATGGATGATGAAAGAAGATTTCAACAATTCACCTGCACTGGGAAATAACAGCCCGTGGAACAGCAAACC TCCTGCTAACCAGG
Comments	Images and probe sequence provided by Claire Anderson. The probe was synthesized from cDNA clone ChEST341c13. Related paper: Anderson C, Khan MAF, Wong F, Solovieva T, Oliveira NMM, Baldock RA, Tickle C, Burt DW, Stern CD. A strategy to discover new organizers identifies a putative heart organizer. Nat Commun. 2016 7:12656. doi: 10.1038/ncomms12656.