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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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RDH10
retinol dehydrogenase 10

Gene

Official Symbol	RDH10
Official Full Name	retinol dehydrogenase 10
CGNC ID	11661
also known as	retinol dehydrogenase 10\|retinol dehydrogenase 10 (all-trans)
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC

Sequence Information

Genomic	Genbank
RNA	NM_001199459
Polypeptide	NP_001186388

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	157506	ENSG00000121039		MIM:607599
Mouse	98711		All phenotypic alleles (5):Chemically induced(2) Targeted, knock-out(1) Targeted, other(2)	MGI:1924238
Xenopus	496504, 446860, 431995			944960
Zebrafish	562840, 378722	ENSDARG00000058730, ENSDARG00000012369	ZDB-GENE-070112-2242, ZDB-GENE-030909-7	ZFIN:ZDB-GENE-070112-2242, ZFIN:ZDB-GENE-030909-7

Gene Ontology

Molecular Function	chemorepellent activity, ephrin receptor binding
Biological Process	brain development, ephrin receptor signaling pathway, negative chemotaxis, more...
Cellular Component	anchored component of external side of plasma membrane, plasma membrane

Links to other databases

Entrez Gene	420183
Ensembl Gene
KEGG	gga:420183

Entry 1

GEISHA Id	RDH10.Reijntjes.2010	Data Source	Publication
Complete cDNA Template Probe	show `GGGTGCAGGATCAGAAAAGAAATTGAGCCTTTCCTTCCACCGTTGAAACCAGAATACTGTGTGAAGCAGGCTATGAGAG CTATCCTTACAGACCAGCCGATGATCTGCACACCTCGCCTCATGTATATGGTCACCTTCATGAAAAGTATTCTGCCCTT TGAAGCAGTTGTGTGCATGTACCGGTTTTTGGGAGCAGACAAGTGTATGTACCCCTTCATTGCTCAAAGGAAACAGGCT ACAAACAACAATGAAGCAAAAAATGGAATTTAACACTGGTTTGGATGGACTAACGTTTATAGGTGAATATGATGTTACC TGAGTGAATCGTGAAGTGCACTTGCATCTAAGAGATGCAAAAAGTCATCATCTTACTGTGGCATTCTCTTGGGTCCTCA ACCTGTGTACCTGTGT`
Citation	Reijntjes S, Zile MH, Maden M. The expression of Stra6 and Rdh10 in the avian embryo and their contribution to the generation of retinoid signatures. Int J Dev Biol. 2010;54(8-9):1267-75.
Copyright	© 2010 UBC Press
Comments	The cDNA template used to generate the probe was obtained by PCR as described in Reijntjes et al.

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

Early Mesoderm
Epiblast

band of mesoderm

7-12

stage 7

stage 8

stage 9

stage 10

Heart
Intermediate Mesoderm
Somites

endocardial tube

13-18

stage 14

stage 16

Eye
Heart
Intermediate Mesoderm
Somites

19-23

stage 19

stage 20

stage 21

stage 23

Cardiovascular
Eye
Hindgut
Limb Buds
Mesonephros
Neural Plate/Tube
Somites
Tail

coelomic epithelium
intersomitic segments
roof plate

Entry 2

GEISHA Id	RDH10.Smith.2018	Data Source	Publication
Complete cDNA Template Probe	show `GGGTGCAGGATCAGAAAAGAAATTGAGCCTTTCCTTCCACCGTTGAAACCAGAATACTGTGTGAAGCAGGCTATGAGAG CTATCCTTACAGACCAGCCGATGATCTGCACACCTCGCCTCATGTATATGGTCACCTTCATGAAAAGTATTCTGCCCTT TGAAGCAGTTGTGTGCATGTACCGGTTTTTGGGAGCAGACAAGTGTATGTACCCCTTCATTGCTCAAAGGAAACAGGCT ACAAACAACAATGAAGCAAAAAATGGAATTTAACACTGGTTTGGATGGACTAACATTTATAGGTGAATATGATGTTACC TGAGTGAATTGTGAAGTGCACTTGCATCTAAGAGATGCAAAAAGTCATCATCTTACTGTGGCATTCTCTTGGGTCCTCA ACCTGTGT`
Citation	Jonathan N Smith, Heather M Walker, Hannah Thompson, J Martin Collinson, Neil Vargesson, Lynda Erskine. Lens-regulated retinoic acid signalling controls expansion of the developing eye. Development. 2018 Oct 10;145(19):dev167171. DOI: 10.1242/dev.167171.
Copyright	Copyright © 2018. Published by The Company of Biologists Ltd.
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Smith et al. 2018.

Stage

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Location (click to highlight)

Comments (click to highlight)

19-24

stage 23

stage 24

Eye
Retina

25-28

stage 26

stage 27

stage 28

Eye
Retina

all

Entry 3

GEISHA Id	RDH10.Anderson.2019	Data Source	Publication
Complete cDNA Template Probe	show ACTGCCAACAGCGGGGCCGCGGGCGTGGGGGGACGGGGCAGACGGCGATCTCTTTGCCTGTGCTCCTTCGTTGAGTGTG GGGTGCGGGACCGAGCACGGGGCGTCCCGAGCGGCGGCGGGCGGAGCGGGGCAGCCCCGGCAGCGGGAGCTCCACCGGT ACCGGGCTGTCCCGGCGAGAACAGCGGCCCCAGGTGCGGAGCCAGGCGAAGGGAGGCTCCGCTCCGCGCCGTGCCCGCC GCTGTGGGCGGGGGTGAGGGCCGCCGGGCCGGGGGCGAGGGGCCGCCAGCATGAACATCCTGCTGGAGCTGTTCGTGGT CACCTTCCGAGTGCTGTGGGCGTTCGTGCTGGCCGCTGCCAAGTGGCTGGTGCGGCCCAAGGAGAAGAGCGTGGCGGGG CAGGTGTGCCTGATCACCGGGGCGGGCAGCGGCCTGGGCCGTCTCTTCGCCTTGGAGTTTGCCCGGCGCCGGGCGCTGC TGGTGCTGTGGGACATCAACACGCAGAGCAACGAGGAGACGGCGGGCATGGTGCGACATATCTACCGCGAGCTCGCCGA GGCTGCCCCCAAAGTAGCTGGAGACGGAGAGAAAGATGCGCTGCCCCATTGCAGCTTGCAGGTTTACACATACACCTGT GATGTGGGCAAAAGAGAAAATGTCTACACAACAGCGGAGAGGGTCCGCAAAGAGGTTGGAGAGGTTTCCGTCCTGGTTA ACAATGCTGGCGTGGTCTCCGGGCACCACCTTTTGGAGTGTCCTGATGAGCTGATTGAGAGGACCATGATGGTCAACTG TCACGCGCATTTCTGGACCACTAAAGCATTCCTTCCCAAGATGCTGGAAATGAATCATGGACACATTGTGACAGTTGCA AGTTCTTTGGGACTGTTCAGCACTGCTGGAGTAGAGGATTATTGTGCTAGCAAATTTGGAGCTGTAGGTTTTCACGAGT CTTTGAGCCATGAACTGAAAGCTGCTGAAAAGGATGGAATCAAAACAACTTTAGTCTGCCCTTATCTTGTAGATACAGG AATGTTCAGAGGGTGCAGGATCAGAAAAGAAATTGAGCCTTTCCTTCCACCGTTGAAACCAGAATACTGTGTGAAGCAG GCTATGAGAGCTATCCTTACAGACCAGCCGATGATCTGCACACCTCGCCTCATGTATATGGTCACCTTCATGAAAAGTA TTCTGCCCTTTGAAGCAGTTGTGTGCATGTACCGGTTTTTGGGAGCAGACAAGTGTATGTACCCCTTCATTGCTCAAAG GAAACAGGCTACAAACAACAATGAAGCAAAAAATGGAATTTAACACTGGTTTGGATGGACTAACATTTATAGGTGAATA TGATGTTACCTGAGTGAATTGTGAAGTGCACTTGCATCTAAGAGATGCAAAAAGTCATCATCTTACTGTGGCATTCTCT TGGGTCCTCAACCTGTGTATTGAACTCTAAAAATCAATGTTTTTTTATATACTGTAAATAAAACTGACTAGTGTACTTG GAAAATGTGATAGGTAAACAAGGTGAATTTACAATGTAGCCGCCACCATTGTCCTTTTAGAATCTCACTGTATGTACAG TAAACTAGTCATACTACTTCTTGTAGGGATGCACTGTGTGATATCTCTTCCTCAGCTTACCAAGATTTATAAGAGCTGT CTACAACCAGAAGATGCGATGTCTCAGAAGTTGTTCGTTTTTCCCTATGGTGTTTGGTGAGGGGCGGGGAGGGAAATCT TGATATTTAAGCTACTGCTTATGACCTTTTAGCAAATTCAAGGACAGTTTCTGACTGCATCTCTTTGCTTGTCAACCCA AGCTCTCTACAGGACACATGGCCGAATTGTGGTGTAATTCTCTTTTGTACCAATTGTGTGTATTCTATTTAAACAAAGA TAAAAATTTTCAAAATCTCTGTAGATTCAAAGGCAAGTGAATGTATCAGAAATACAGTCAAACTTGTACTGGCATCTGG TTTTCTAGGAATGCGGTCAGTGATTTAAATCAACTTCTTTTCGAGTCACTTGATTTGAAATATGTTCTCTCCTTTTTCC CTCTATGTCAGAGTCCAGTCTGCTGTTATGGACTATGTTTCTTTTCGTAGTACTTATTTCTGACAGAGTTCTCCCACCC CCTGAGGAAGCTGTTGTACTAAATTTCTGTAACTGGACTTGTGCCTAAAAGACAAAGCAACTCAGCTGAGATACAAACT GTTTATGTAACTGCTGGTCATATGCCAACTATTAGCAAATGAAAAATAGAGTAACGCCTGATGCAACTTTACATGTGGA GTATGGAAGGGTGTAAAGATTTTTTTGAGTTGTACTCACATTGTAGAAGAGCAAACGACATTTTTACAGTATTTTTTGT AAAGAGAACAATTTTGTGCCTTGAATTTGGTAATCTGTATTAGTGAAGCATTGTAAAAGTGAACTTCTACCTCTGTATC TTAATGTATACCATCCACTTGTAAACTACTATTGGACAAATTGTTATTACTTTTTTTAGAATGTCTTGTTACATAGTGA CCAATGCCTGTGGTTATTAAAGTGAGCCACCTTTTCCTTAAA
Citation	Anderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.
Copyright	Copyright © 2019 Elsevier Inc. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001199459 ).