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SIM1 SIM bHLH transcription factor 1 The human orthologue of this gene is associated with the following human disease:
Gene Summary Expression Other Species Expression JBrowse Gene Official Symbol SIM1 Official Full Name SIM bHLH transcription factor 1 CGNC ID 49663 also known as single-minded homolog 1|single-minded family bHLH transcription factor 1, SIM1 , single-minded homolog 1 gene type protein-coding
Genomic Map Sequence Information Gene Expression Orthology Gene Ontology Molecular Function Biological Process Cellular Component
Links to other databases
Entry 1 GEISHA Id SIM1.UApcr Data Source GEISHA ISH Analysis Forward cDNA Template Primer GCGGGGGCTACAAGGTCATCC Reverse cDNA Template Primer AATTAACCCTCACTAAAGGGGGAGAGGCTGTGTCGGTGAGG cDNA Template Length 719 Forward cDNA Template Probe show NCCCGGAGAGGCGGAGGGCTCACCCCCTGGCTCTCAGGTCAGATTCAGATCTCTCAGTGTGAAATCCGGAACACTGTGG GTATGGTGATGTCCTTGATTTTGACTTTGTGCTCGAGAGGCGAGATTTGCTTCCCTTTCTATTATCCGTTATGGTCGGA GTTGAATTTGCGTATGAGAATGCCGGCTTGGTAGCTGTGACCTGATCCAAGGAGAGCTGTAGTCCTTTATATTCAGTAT CCGTAAGGACGTAGTTAACGCTGACGATGCAGTGCGGGCGTGACGAGCGGCTGTTGTGCACGATGGTGGCATAGCTCTG CACCCACACCCAGCCGCCGTGCTTGGCCAGGAAGCGGTAGTACTTGGTGGTCACCTGGCCCTTCACCAGCAACAAGTGA TGCGCGCATCGCAGGTGGAAGGTGTCACAGCCGTGTACGTGATGGTAAAGGGTCTTCTCGATCAGGTCCTGGGGCTCGT ACCCGGTGAGCTCGGCCACCCTGGAGTCTAGGAAGATGAGCTTCATGTCCAGGCTAGCCCGGAACATGAACATGTTGCT GTGCAGCTTGATCTCTGTCACTGCGCTGGGAGGCAACGAGTGGCCCACGGCGACCAAACCGACGTTTTGGTAGCAGCCG TCGAAAGGGGACATGTCCAGGCTGTACTGGCGGATCTTCAGGTAGCCGCTGCAGTGGATGACCTTGTAGCCCCCGCAAA A
Entry 2 GEISHA Id Sim1.Ahmed.2006 Data Source Publication Complete cDNA Template Probe show ATGAAAGAGAAGTCCAAAAATGCTGCCCGGACTAGGCGGGAGAAAGAAAACAGCGAGTTTTATGAACTGGCTAAATTAC TGCCCCTGCCCTCGGCCATCACCTCCCAGCTGGACAAAGCATCCATAATCAGGCTCACCACCAGCTACCTCAAGATGCG GGTGGTTTTCCCAGAAGGACTGGGAGAAGCCTGGGGCCACTCCAGCCGCACCAGCCCGCTGGATAACGTCGGACGGGAG CTGGGATCGCATCTTTTGCAGACGCTGGACGGTTTCATATTCGTGGTGGCTCCGGATGGGAAGATCATGTACATCTCGG AGACCGCCTCGGTGCACCTGGGCCTGTCTCAGGTAGAGCTGACCGGCAACAGCATTTACGAGTACATCCACCCCGCCGA CCACGACGAGATGACGGCGGTGCTTACAGCCCACCAGCCCTACCACTCCCACTTCGTGCAGGAGTATGAGATCGAGCGG TCCTTTTTCCTGCGGATGAAATGCGTACTGGCCAAGAGGAACGCGGGGCTGACCTGCGGGGGCTACAAGGTCATCCACT GCAGCGGCTACCTGAAGATCCGCCAGTACAGCCTGGACATGTCCCCTTTCGACGGCTGCTACCAAAACGTCGGTTTGGT CGCCGTGGGCCACTCGTTGCCTCCCAGCGCAGTGACAGAGATCAAGCTGCACAGCAACATGTTCATGTTCCGGGCTAGC CTGGACATGAAGCTCATCTTCCTAGACTCCAGGGTGGCCGAGCTCACCGGGTACGAGCCCCAGGACCTGATCGAGAAGA CCCTTTACCATCACGTACACGGCTGTGACACCTTCCACCTGCGATGCGCGCATCACTTGTTGCTGGTGAAGGGCCAGGT GACCACCAAGTACTACCGCTTCCTGGCCAAGCACGGCGGCTGGGTGTGGGTGCAGAGCTATGCCACCATCGTGCACAAC AGCCGCTCGTCACGCCCGCACTGCATCGTCAGCGTTAACTACGTCCTTACGGATACTGAATATAAAGGACTACAGCTCT CCTTGGATCAGGTCACAGCTACCAAGCCGGCATTCTCATACGCAAATTCAACTCCGACCATAACGGATAATAGAAAGGG AAGCAAATCTCGCCTCTCGAGCACAAAGTCAAAATCAAGGACATCACCATACCCACAGTATTCCGGATTTCACACTGAG AGATCTGAATCTGACCATGAGAGCCAGTGGGGTGGGAGCCCCCTCACCGACACAGCCTCTCCCCAGCTGTTGGAGCCCA CAGACAGGCCGAGCTCCCAGCATCACGATGTCTCCTGTGCCTACAGACAGTACTCGGACCGCAGTGCTCTCTGCTATGG TTTTGCACTAGACCACTCCAGGCTGGGCGATGACAGACATTTCCATACTCAGGCCTGTGAGGGAGGCAGATGTGAAGCT GGCAGATATTTCCTTGGCACACCACAGCCGGGGAGGGAAGGCTGGTGGGGCTCCCGATCAGCCTTGCCCCTGACTAAGT CATCCCCTGAAAGCAGAGAGGCGTATGAAAACAGTATGCCCCACATAACTTCAGTGCACAGGATTCACGGGAGAGGACA CTGGGATGAGGACAGTGTTGTTAGCTCTCCTGATCCTGGCTCTGCCAGTGAATCTGGTGACCGATACCGTGCTGAACAG TATCAGAGCAGCCCACATGAGCCCAGCAAAATTGAAACTCTAATAAGAGCCACCCAGCAAATGATCAAAGAGGAAGAAA ACAGGCTACAGCTACGGAAAACAACCCCTGATCCACTGATCTCCATTAATGGCACAGGGAAGAAACACACAATTTGTTT TGCAAACTACCCCCAGCAACAGTTGGCAGGGGATATCTGCCGCGTTCCGACGGTTGCCAACACTCCTCCTTGTGAACAC ATCCAGCAACGGGATGGAAAAATTATGAGCCCTCATGAAAATGACTATGACAACAGTCCCACAACATTGTCTAGGATAA GCAGTCCCAATTCTGACCGAATATCAAAATCTAGCTTGGTACTAGCTAAAGACTACCTGAATACAGACATGTCCCCTCA TCAAACTCCAGGTGATCATCCAGCAGCTTCTCCAAATTATTACAACTCCCACAGGCAGTACTTTGATAAGCATGCTTAC ACGCTAACTGGGTATGCCCTGGAGCATCTATACGACACTGAAGCCATTAGAAACTATTCACTAGGCTGCAATGGATCAC ACTTTGATGTGACTTCTCACTTAAGGATGCAGCAAGATCCAGCACAAGGACACAAAGGGACATCCGTTATAATAACCAA TGGAAGCTGA
Citation Ahmed MU, Cheng L, Dietrich S. Establishment of the epaxial-hypaxial boundary in the avian myotome. Dev Dyn. 2006 Jul;235(7):1884-94. Copyright Copyright © 2006 Wiley-Liss, Inc. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_419817).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 19-24 stage 22
stage 22
stage 24
Dermatome Myotome 25 stage 25
Dermatome Myotome
Entry 3 GEISHA Id Sim1.Bothe.2007 Data Source Publication Complete cDNA Template Probe show ATGAAAGAGAAGTCCAAAAATGCTGCCCGGACTAGGCGGGAGAAAGAAAACAGCGAGTTTTATGAACTGGCTAAATTAC TGCCCCTGCCCTCGGCCATCACCTCCCAGCTGGACAAAGCATCCATAATCAGGCTCACCACCAGCTACCTCAAGATGCG GGTGGTTTTCCCAGAAGGACTGGGAGAAGCCTGGGGCCACTCCAGCCGCACCAGCCCGCTGGATAACGTCGGACGGGAG CTGGGATCGCATCTTTTGCAGACGCTGGACGGTTTCATATTCGTGGTGGCTCCGGATGGGAAGATCATGTACATCTCGG AGACCGCCTCGGTGCACCTGGGCCTGTCTCAGGTAGAGCTGACCGGCAACAGCATTTACGAGTACATCCACCCCGCCGA CCACGACGAGATGACGGCGGTGCTTACAGCCCACCAGCCCTACCACTCCCACTTCGTGCAGGAGTATGAGATCGAGCGG TCCTTTTTCCTGCGGATGAAATGCGTACTGGCCAAGAGGAACGCGGGGCTGACCTGCGGGGGCTACAAGGTCATCCACT GCAGCGGCTACCTGAAGATCCGCCAGTACAGCCTGGACATGTCCCCTTTCGACGGCTGCTACCAAAACGTCGGTTTGGT CGCCGTGGGCCACTCGTTGCCTCCCAGCGCAGTGACAGAGATCAAGCTGCACAGCAACATGTTCATGTTCCGGGCTAGC CTGGACATGAAGCTCATCTTCCTAGACTCCAGGGTGGCCGAGCTCACCGGGTACGAGCCCCAGGACCTGATCGAGAAGA CCCTTTACCATCACGTACACGGCTGTGACACCTTCCACCTGCGATGCGCGCATCACTTGTTGCTGGTGAAGGGCCAGGT GACCACCAAGTACTACCGCTTCCTGGCCAAGCACGGCGGCTGGGTGTGGGTGCAGAGCTATGCCACCATCGTGCACAAC AGCCGCTCGTCACGCCCGCACTGCATCGTCAGCGTTAACTACGTCCTTACGGATACTGAATATAAAGGACTACAGCTCT CCTTGGATCAGGTCACAGCTACCAAGCCGGCATTCTCATACGCAAATTCAACTCCGACCATAACGGATAATAGAAAGGG AAGCAAATCTCGCCTCTCGAGCACAAAGTCAAAATCAAGGACATCACCATACCCACAGTATTCCGGATTTCACACTGAG AGATCTGAATCTGACCATGAGAGCCAGTGGGGTGGGAGCCCCCTCACCGACACAGCCTCTCCCCAGCTGTTGGAGCCCA CAGACAGGCCGAGCTCCCAGCATCACGATGTCTCCTGTGCCTACAGACAGTACTCGGACCGCAGTGCTCTCTGCTATGG TTTTGCACTAGACCACTCCAGGCTGGGCGATGACAGACATTTCCATACTCAGGCCTGTGAGGGAGGCAGATGTGAAGCT GGCAGATATTTCCTTGGCACACCACAGCCGGGGAGGGAAGGCTGGTGGGGCTCCCGATCAGCCTTGCCCCTGACTAAGT CATCCCCTGAAAGCAGAGAGGCGTATGAAAACAGTATGCCCCACATAACTTCAGTGCACAGGATTCACGGGAGAGGACA CTGGGATGAGGACAGTGTTGTTAGCTCTCCTGATCCTGGCTCTGCCAGTGAATCTGGTGACCGATACCGTGCTGAACAG TATCAGAGCAGCCCACATGAGCCCAGCAAAATTGAAACTCTAATAAGAGCCACCCAGCAAATGATCAAAGAGGAAGAAA ACAGGCTACAGCTACGGAAAACAACCCCTGATCCACTGATCTCCATTAATGGCACAGGGAAGAAACACACAATTTGTTT TGCAAACTACCCCCAGCAACAGTTGGCAGGGGATATCTGCCGCGTTCCGACGGTTGCCAACACTCCTCCTTGTGAACAC ATCCAGCAACGGGATGGAAAAATTATGAGCCCTCATGAAAATGACTATGACAACAGTCCCACAACATTGTCTAGGATAA GCAGTCCCAATTCTGACCGAATATCAAAATCTAGCTTGGTACTAGCTAAAGACTACCTGAATACAGACATGTCCCCTCA TCAAACTCCAGGTGATCATCCAGCAGCTTCTCCAAATTATTACAACTCCCACAGGCAGTACTTTGATAAGCATGCTTAC ACGCTAACTGGGTATGCCCTGGAGCATCTATACGACACTGAAGCCATTAGAAACTATTCACTAGGCTGCAATGGATCAC ACTTTGATGTGACTTCTCACTTAAGGATGCAGCAAGATCCAGCACAAGGACACAAAGGGACATCCGTTATAATAACCAA TGGAAGCTGA
Citation Bothe I, Ahmed MU, Winterbottom FL, von Scheven G, Dietrich S. Extrinsic versus intrinsic cues in avian paraxial mesoderm patterning and differentiation. Dev Dyn. 2007 Sep;236(9):2397-409. Copyright Copyright © 2007 Wiley-Liss, Inc. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_419817).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 13-18 stage 15
Sclerotome Somites 19-24 stage 24
stage 24
Somites
Entry 4 GEISHA Id Sim1.Cheng.2004 Data Source Publication Complete cDNA Template Probe show ATGAAAGAGAAGTCCAAAAATGCTGCCCGGACTAGGCGGGAGAAAGAAAACAGCGAGTTTTATGAACTGGCTAAATTAC TGCCCCTGCCCTCGGCCATCACCTCCCAGCTGGACAAAGCATCCATAATCAGGCTCACCACCAGCTACCTCAAGATGCG GGTGGTTTTCCCAGAAGGACTGGGAGAAGCCTGGGGCCACTCCAGCCGCACCAGCCCGCTGGATAACGTCGGACGGGAG CTGGGATCGCATCTTTTGCAGACGCTGGACGGTTTCATATTCGTGGTGGCTCCGGATGGGAAGATCATGTACATCTCGG AGACCGCCTCGGTGCACCTGGGCCTGTCTCAGGTAGAGCTGACCGGCAACAGCATTTACGAGTACATCCACCCCGCCGA CCACGACGAGATGACGGCGGTGCTTACAGCCCACCAGCCCTACCACTCCCACTTCGTGCAGGAGTATGAGATCGAGCGG TCCTTTTTCCTGCGGATGAAATGCGTACTGGCCAAGAGGAACGCGGGGCTGACCTGCGGGGGCTACAAGGTCATCCACT GCAGCGGCTACCTGAAGATCCGCCAGTACAGCCTGGACATGTCCCCT
Citation Cheng L, Alvares LE, Ahmed MU, El-Hanfy AS, Dietrich S. The epaxial-hypaxial subdivision of the avian somite. Dev Biol. 2004 Oct 15;274(2):348-69. Copyright Reprinted from Developmental Biology, Volume 274, Issue 2, Louise Cheng, Lúcia E. Alvares, Mohi U. Ahmend, Amira S. El-Hanfy, and Susanne Dietrich, The epaxial-hypaxial subdivision of the avian somite, Pages 348-369, Copyright 2004, with permission from Elsevier.
Copyright © 2004 Elsevier B.V. All rights reserved. Comments Authors indicate the probe is from Pourquie et al., 1996 who said they cloned a 600bp fragment with an upstream primer MKEKSKN and 3'RACE. The 5' end fragment is Acc# U40058. The 600 bp sequence here was extracted from XM_419817 using this information.
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 19-20 stage 20
Entry 5 GEISHA Id Sim1.Agarwala.2005 Data Source Publication Complete cDNA Template Probe show ATGAAAGAGAAGTCCAAAAATGCTGCCCGGACTAGGCGGGAGAAAGAAAACAGCGAGTTTTATGAACTGGCTAAATTAC TGCCCCTGCCCTCGGCCATCACCTCCCAGCTGGACAAAGCATCCATAATCAGGCTCACCACCAGCTACCTCAAGATGCG GGTGGTTTTCCCAGAAGGACTGGGAGAAGCCTGGGGCCACTCCAGCCGCACCAGCCCGCTGGATAACGTCGGACGGGAG CTGGGATCGCATCTTTTGCAGACGCTGGACGGTTTCATATTCGTGGTGGCTCCGGATGGGAAGATCATGTACATCTCGG AGACCGCCTCGGTGCACCTGGGCCTGTCTCAGGTAGAGCTGACCGGCAACAGCATTTACGAGTACATCCACCCCGCCGA CCACGACGAGATGACGGCGGTGCTTACAGCCCACCAGCCCTACCACTCCCACTTCGTGCAGGAGTATGAGATCGAGCGG TCCTTTTTCCTGCGGATGAAATGCGTACTGGCCAAGAGGAACGCGGGGCTGACCTGCGGGGGCTACAAGGTCATCCACT GCAGCGGCTACCTGAAGATCCGCCAGTACAGCCTGGACATGTCCCCTTTCGACGGCTGCTACCAAAACGTCGGTTTGGT CGCCGTGGGCCACTCGTTGCCTCCCAGCGCAGTGACAGAGATCAAGCTGCACAGCAACATGTTCATGTTCCGGGCTAGC CTGGACATGAAGCTCATCTTCCTAGACTCCAGGGTGGCCGAGCTCACCGGGTACGAGCCCCAGGACCTGATCGAGAAGA CCCTTTACCATCACGTACACGGCTGTGACACCTTCCACCTGCGATGCGCGCATCACTTGTTGCTGGTGAAGGGCCAGGT GACCACCAAGTACTACCGCTTCCTGGCCAAGCACGGCGGCTGGGTGTGGGTGCAGAGCTATGCCACCATCGTGCACAAC AGCCGCTCGTCACGCCCGCACTGCATCGTCAGCGTTAACTACGTCCTTACGGATACTGAATATAAAGGACTACAGCTCT CCTTGGATCAGGTCACAGCTACCAAGCCGGCATTCTCATACGCAAATTCAACTCCGACCATAACGGATAATAGAAAGGG AAGCAAATCTCGCCTCTCGAGCACAAAGTCAAAATCAAGGACATCACCATACCCACAGTATTCCGGATTTCACACTGAG AGATCTGAATCTGACCATGAGAGCCAGTGGGGTGGGAGCCCCCTCACCGACACAGCCTCTCCCCAGCTGTTGGAGCCCA CAGACAGGCCGAGCTCCCAGCATCACGATGTCTCCTGTGCCTACAGACAGTACTCGGACCGCAGTGCTCTCTGCTATGG TTTTGCACTAGACCACTCCAGGCTGGGCGATGACAGACATTTCCATACTCAGGCCTGTGAGGGAGGCAGATGTGAAGCT GGCAGATATTTCCTTGGCACACCACAGCCGGGGAGGGAAGGCTGGTGGGGCTCCCGATCAGCCTTGCCCCTGACTAAGT CATCCCCTGAAAGCAGAGAGGCGTATGAAAACAGTATGCCCCACATAACTTCAGTGCACAGGATTCACGGGAGAGGACA CTGGGATGAGGACAGTGTTGTTAGCTCTCCTGATCCTGGCTCTGCCAGTGAATCTGGTGACCGATACCGTGCTGAACAG TATCAGAGCAGCCCACATGAGCCCAGCAAAATTGAAACTCTAATAAGAGCCACCCAGCAAATGATCAAAGAGGAAGAAA ACAGGCTACAGCTACGGAAAACAACCCCTGATCCACTGATCTCCATTAATGGCACAGGGAAGAAACACACAATTTGTTT TGCAAACTACCCCCAGCAACAGTTGGCAGGGGATATCTGCCGCGTTCCGACGGTTGCCAACACTCCTCCTTGTGAACAC ATCCAGCAACGGGATGGAAAAATTATGAGCCCTCATGAAAATGACTATGACAACAGTCCCACAACATTGTCTAGGATAA GCAGTCCCAATTCTGACCGAATATCAAAATCTAGCTTGGTACTAGCTAAAGACTACCTGAATACAGACATGTCCCCTCA TCAAACTCCAGGTGATCATCCAGCAGCTTCTCCAAATTATTACAACTCCCACAGGCAGTACTTTGATAAGCATGCTTAC ACGCTAACTGGGTATGCCCTGGAGCATCTATACGACACTGAAGCCATTAGAAACTATTCACTAGGCTGCAATGGATCAC ACTTTGATGTGACTTCTCACTTAAGGATGCAGCAAGATCCAGCACAAGGACACAAAGGGACATCCGTTATAATAACCAA TGGAAGCTGA
Citation Agarwala S, Aglyamova GV, Marma AK, Fallon JF, Ragsdale CW. Differential susceptibility of midbrain and spinal cord patterning to floor plate defects in the talpid2 mutant. Dev Biol. 2005 Dec 1;288(1):206-20. Epub 2005 Oct 21. Copyright Copyright © 2005 Elsevier Inc. All rights reserved. Comments According to the authors, "Digoxigenin
(DIG)- and fluorescein-labeled riboprobes were synthesized from chick cDNA plasmids..." As information provided was insufficient to verify exact sequence used to synthesize probe,the sequence below was obtained from NCBI (XM_419817).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 25-26 stage 26
Neural Plate/Tube Spinal Cord
Entry 6
Mouse Frog Fruit Fly Zebra Finch Zebrafish