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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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	Transcription Factors
	Growth Factors
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NGFR
nerve growth factor receptor

Gene

Official Symbol	NGFR
Official Full Name	nerve growth factor receptor
CGNC ID	9493
also known as	tumor necrosis factor receptor superfamily member 16\|NGF receptor\|gp80-LNGFR\|low affinity neurotrophin receptor p75NTR\|low-affinity nerve growth factor receptor\|nerve growth factor receptor (TNFR superfamily, member 16)\|p75 ICD, Tumor necrosis factor receptor superfamily member 16 precursor, Low- affinity nerve growth factor receptor, NGF receptor, Gp80-LNGFR, p75 ICD, p75NTR, Low affinity neurotrophin receptor p75NTR
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_001146133
Polypeptide	NP_001139605

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	4804	ENSG00000064300		MIM:162010
Mouse	18053	ENSMUSG00000000120	All phenotypic alleles (6):Targeted, knock-out(2) Targeted, other(4)	MGI:97323
Xenopus	493361, 432338			947582
Zebrafish	100330017, 564338, 368715	ENSDARG00000089223	ZDB-GENE-070606-2, ZDB-GENE-050928-1	ZFIN:ZDB-GENE-070606-2, ZFIN:ZDB-GENE-050928-1

Gene Ontology

Molecular Function
Biological Process	apoptotic process, cell differentiation, nervous system development, signal transduction
Cellular Component	integral component of membrane

Links to other databases

Entrez Gene	425805
Ensembl Gene
KEGG	gga:425805

Entry 1

GEISHA Id	p75NTR.Okafuji.2005	Data Source	Publication
Complete cDNA Template Probe	show CGGGGGATGCGAGGCGGCCCCGGCGCACCATGGCCGGGTTCGTACCGCTGCTGCTGCTCCTGCTGCCGGCGGGACCCAC CTGGGGCTCCAAGGAAAAGTGCTTGACCAAGATGTACACGACGAGCGGTGAGTGCTGCAAAGCCTGCAACCTGGGTGAG GGCGTGGTGCAGCCCTGCGGGGTCAACCAGACCGTCTGCGAGCCCTGCCTGGACAGTGTGACCTACTCGGACACAGTGA GTGCCACAGAACCGTGCAAGCCCTGCACACAGTGCGTGGGGCTGCACAGCATGTCTGCACCCTGCGTGGAGTCTGACGA CGCCGTGTGCCGCTGCGCCTACGGCTACTTCCAGGATGAGCTGAGCGGGAGCTGCAAGGAGTGCAGCATCTGTGAGGTG GGCTTTGGCCTCATGTTCCCCTGCCGGGACTCACAGGACACGGTCTGTGAGGAGTGCCCCGAGGGCACCTTCTCGGATG AGGCCAATTTCGTGGATCCCTGCCTTCCCTGCACCATCTGCGAAGAGAACGAGGTGATGGTGAAGGAGTGCACGGCCAC CTCCGATGCTGAGTGCAGAGCGCACCGCGGGCTGCTCGCTCACAGCATCGTGCCTGCAAGCTGA
Citation	Okafuji T, Tanaka H. Expression pattern of LINGO-1 in the developing nervous system of the chick embryo. Gene Expr Patterns. 2005 Dec;6(1):57-62. Epub 2005 Jul 18.
Copyright	Reprinted with permission from Elsevier. Copyright © 2005 Elsevier B.V. All rights reserved.
Comments	Authors said: the template for the chick p75NTR probe was a 634-bp (8 bp of 5′-UTR+626 bp of ORF) fragment. The sequence below was obtained from NCBI (acc # XM_423516).

Stage

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Location (click to highlight)

Comments (click to highlight)

19-24

stage 19

Central Nervous System
Forebrain
Hindbrain
Midbrain
Spinal Cord

Fig. 5 compares several genes.

25-27

stage 27

Spinal Cord

Entry 2

GEISHA Id	NGFR.Hallböök.1990	Data Source	Publication
Complete cDNA Template Probe	show GCCGAGGCGGCGGGCGGCAGAGGGAGGGCAGCCCGGGGGATGCGAGGCGGCCCCGGCGCACCATGGCCGGGTTCGTACC GCTGCTGCTGCTCCTGCTGCCGGCGGGACCCACCTGGGGCTCCAAGTGCTTGACTAAGATGTACACGACGAGCGGTGAG TGCTGCAAAGCCTGCAACCTGGGTGAGGGCGTGGTGCAGCCCTGCGGGGTCAACCAGACCGTCTGCGAGCCCTGCCTGG ACAGTGTGACCTACTCGGACACAGTGAGTGCCACAGAACCGTGCAAGCCCTGCACACAGTGCGTGGGGCTGCACAGCAT GTCTGCACCCTGCGTGGAGTCTGACGACGCCGTGTGCCGCTGCGCCTACGGCTACTTCCAGGATGAGCTGAGCGGGAGC TGCAAGGAGTGCAGCATCTGTGAGGTGGGCTTTGGCCTCATGTTCCCCTGCCGGGACTCACAGGACACGGTCTGTGAGG AGTGCCCCGAGGGCACCTTCTCGGATGAGGCCAATTTCGTGGATCCCTGCCTTCCCTGCACCATCTGCGAAGAGAACGA GGTGATGGTGAAGGAGTGCACGGCCACCTCCGATGCTGAGTGCAGAGACCTCCACCCACGCTGGACAACGCACACCCCA TCCCTGGCGGGTTCTGACAGCCCCGAGCCAATCACCAGGGACCCCTTCAACACCGAGGGGATGGCCACCACCCTGGCAG ACATTGTCACCACCGTCATGGGCAGCTCGCAGCCCGTCGTGAGCCGCGGCACCGCCGATAACCTCATCCCTGTGTACTG CTCTATCCTGGCGGCCGTGGTGGTGGGGCTGGTGGCTTACATTGCCTTCAAAAGGTGGAACAGCTGCAAGCAGAACAAG CAGGGAGCCAACAACCGCCCTGTGAACCAGACGCCTTCCCCAGAGGGGGAGAAGCTGCACAGCGACAGCGGCATCTCGG TGGACAGCCAGAGCTTGCACGACCAGCAGCCGCCCAACCAGAGCACGCAGGGACCAGCACCAAAGGGAGATGGGAGCTT GTACGCCAGCCTGCCGCCCAGCAAGCAGGAGGAGGTGGAGAAACTGCTGAGCAGCTCTGCGGAGGAGACGTGGCGGCAG CTGGCCGGGGAGCTGGGCTACAAGGAGGACCTCATAGACTGCTTCACACGGGAGGAATCGCCCGCCCGAGCGCTGCTGG CCGACTGGTCGGCCAAGGAGACGGCCACTCTCGACGCCCTCCTGGTGGCCCTGCGGAAGATCCAACGTGGGGACATCGC TGAGAGCCTGTACAGCGAGTCCACCGCCACCTCACCCGTGTGAAGGGCGGCCCGGAGGGGGGAGGTGCAGCCGGGGGTC CCCTGCCCGGCTGTCTC
Citation	Hallböök F, Ayer-Lelièvre C, Ebendal T, Persson H. Expression of nerve growth factor receptor mRNA during early development of the chicken embryo: emphasis on cranial ganglia. Development. 1990 Apr;108(4):693-704.
Copyright	© The Company of Biologists Limited 1990

Stage

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13-18

stage 18

Ear/Otic Placode
Telencephalon

Visceral arches

25-30

stage 26

Cranial Ganglia
Spinal Cord

31-44

stage 38

stage 43

stage 44

Hatched P3

Entry 3

GEISHA Id	p75NTR.Karlsson.1998	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GCCGAGGCGGCGGGCGGCAGAGGGAGGGCAGCCCGGGGGATGCGAGGCGGCCCCGGCGCACCATGGCCGGGTTCGTACC GCTGCTGCTGCTCCTGCTGCCGGCGGGACCCACCTGGGGCTCCAAGTGCTTGACTAAGATGTACACGACGAGCGGTGAG TGCTGCAAAGCCTGCAACCTGGGTGAGGGCGTGGTGCAGCCCTGCGGGGTCAACCAGACCGTCTGCGAGCCCTGCCTGG ACAGTGTGACCTACTCGGACACAGTGAGTGCCACAGAACCGTGCAAGCCCTGCACACAGTGCGTGGGGCTGCACAGCAT GTCTGCACCCTGCGTGGAGTCTGACGACGCCGTGTGCCGCTGCGCCTACGGCTACTTCCAGGATGAGCTGAGCGGGAGC TGCAAGGAGTGCAGCATCTGTGAGGTGGGCTTTGGCCTCATGTTCCCCTGCCGGGACTCACAGGACACGGTCTGTGAGG AGTGCCCCGAGGGCACCTTCTCGGATGAGGCCAATTTCGTGGATCCCTGCCTTCCCTGCACCATCTGCGAAGAGAACGA GGTGATGGTGAAGGAGTGCACGGCCACCTCCGATGCTGAGTGCAGAGACCTCCACCCACGCTGGACAACGCACACCCCA TCCCTGGCGGGTTCTGACAGCCCCGAGCCAATCACCAGGGACCCCTTCAACACCGAGGGGATGGCCACCACCCTGGCAG ACATTGTCACCACCGTCATGGGCAGCTCGCAGCCCGTCGTGAGCCGCGGCACCGCCGATAACCTCATCCCTGTGTACTG CTCTATCCTGGCGGCCGTGGTGGTGGGGCTGGTGGCTTACATTGCCTTCAAAAGGTGGAACAGCTGCAAGCAGAACAAG CAGGGAGCCAACAACCGCCCTGTGAACCAGACGCCTTCCCCAGAGGGGGAGAAGCTGCACAGCGACAGCGGCATCTCGG TGGACAGCCAGAGCTTGCACGACCAGCAGCCGCCCAACCAGAGCACGCAGGGACCAGCACCAAAGGGAGATGGGAGCTT GTACGCCAGCCTGCCGCCCAGCAAGCAGGAGGAGGTGGAGAAACTGCTGAGCAGCTCTGCGGAGGAGACGTGGCGGCAG CTGGCCGGGGAGCTGGGCTACAAGGAGGACCTCATAGACTGCTTCACACGGGAGGAATCGCCCGCCCGAGCGCTGCTGG CCGACTGGTCGGCCAAGGAGACGGCCACTCTCGACGCCCTCCTGGTGGCCCTGCGGAAGATCCAACGTGGGGACATCGC TGAGAGCCTGTACAGCGAGTCCACCGCCACCTCACCCGTGTGAAGGGCGGCCCGGAGGGGGGAGGTGCAGCCGGGGGTC CCCTGCCCGGCTGTCTC
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_001146133.1). p75NTR is also known as: NGFR

Stage

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Location (click to highlight)

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31-43

stage 35

stage 40

stage 43

Retina

Entry 4

GEISHA Id	NGFR.Anderson.2019	Data Source	Publication
Complete cDNA Template Probe	show CAGGATGAGCTGAGCGGGAGCTGCAAGGAGTGCAGCATCTGTGAGGTGGGCTTTGGCCTCATGTTCCCCTGCCGGGACT CACAGGACACGGTCTGTGAGGAGTGCCCCGAGGGCACCTTCTCGGATGAGGCCAATTTCGTGGATCCCTGCCTGCCCTG CACCATCTGCGAAGAGAACGAGGTGATGGTGAAGGAGTGCAAGGCCACCTCCGATGCTGAGTGCAGAGACCTCCACCCA CGCTGGACAACGCACACCCCATCCCTGGCGGGTTCTGACAGCCCCGAGCCAATCACCAGGACCCCTTCAACACCGAGGG GGATGGCCACCACCCTGGCAGACATTGTCACCACCGTCATGGGCAGCTCGCAGCCCGTCGTGAGCCGCGGCACCGCCGA TAACCTCATCCCTGTGTCCTTTTCTAATGTGTCTGTTGTACAAAGAACGTGAGTTTCTCCACTTGTTCCCCCGCTCCCT TCTGTAATGCCAATGCCAGTTTATTAGAGAGTCTTACGGTGAAGAAATTGCCGTCGTAGAAGGAGTTGTGGGTGTGCTG GGAGGGCTGAGCAGCATGAGGTGCGGGGGGCGTCTGCACGGGGGTCGGCTCGGCGGGTCCTATCGGTGTGTATCCGGTG GGATTGCCAATAAAGAG
Citation	Anderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.
Copyright	Copyright © 2019 Elsevier Inc. All rights reserved.
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Anderson et al. 2019.