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Chicken Stage Series
CDH10
cadherin 10
Gene Summary
Expression
Other Species Expression
JBrowse
Gene
Official Symbol
CDH10
Official Full Name
cadherin 10
CGNC ID
9789
also known as
cadherin-10, cadherin-10|cadherin 10, type 2 (T2-cadherin)
gene type
protein-coding
Genomic Map
Ensembl ID not known
NCBI
UCSC
Sequence Information
Genomic
RNA
NM_214673
Polypeptide
NP_999838
Gene Expression
In Situ Hybridization
GEISHA
Orthology
Entrez Gene
Ensembl Gene
Genetic Phenotypes
MOD
Fruit Fly
Human
1008
ENSG00000040731
MIM:604555
Mouse
320873
ENSMUSG00000022321
All phenotypic alleles (
6
):Targeted, other(
6
)
MGI:107436
Xenopus
100496218
1012078
Zebrafish
568370
ENSDARG00000055843
ZDB-GENE-060614-1
ZFIN:ZDB-GENE-060614-1
Gene Ontology
Molecular Function
calcium ion binding
Biological Process
homophilic cell adhesion
Cellular Component
integral component of membrane
,
plasma membrane
Links to other databases
Entrez Gene
408049
Ensembl Gene
KEGG
gga:408049
Entry 1
GEISHA Id
CDH10.UApcr
Data Source
GEISHA ISH Analysis
Forward cDNA Template Primer
CCAGATGGGTGGATTATCAGGG
Reverse cDNA Template Primer
ATTAACCCTCACTAAAGGATGGTAAGTGTGCCAGTGCTGCTC
cDNA Template Length
1020
Forward cDNA Template Probe
show
ATATCACCACCTGGGNTAAGAGGGTATGTACCTTATTTCATGGTCGACTAAAGCCATTTCTTCTTGGTTAAAATTCTGG
CAGTGTTATCTTCATTGTCCTGAACAGTGAAATTAGGGTTAACAGCTGCTAAACTGAAGAAAAATTTTTGTCCCCCAAG
AGGGTCATCTTTGTCTACTGCACTTATGGTCTGGATAAGCTGTCCGGCTCTTGCATTTTCACAAACAAAAGTATCGTAG
AATACAGCAAACTGTGGGGCATTGTCATTAACATCCAAAATTCGTACATAGACAGGAACACGGGTAGTATCTTTCAGGT
TGTTGATCTCAGCTGCTATAACACTGAGATTGTGCCATTGTGATATCTCACGGTCCAGTGGCTTAGAAGTATAGATGGA
TCCATTTCCAGAATGAATATTGAATATCCTGTCAAGATCTGTATGACGATCCAGAGAAAACCTTATAGGGCTTGAAGCT
GAATCAGGATCTCGTGCCATTACTGTTCCTATTATTGTCCCCAACTCAATATCTTCATGAACCTCAAAAAGGTAAGAAG
ATCTGCTGAAGACAGGAGGCTCATCTACATCCTCTACAGAGATTTTCACAATAGTTGTATCTTTGAAAGGCCCAAGGTA
ATAGAAGCGTGGATCCACATGTGTATTCTCAGCTTCTACTTTCAAGGTATAAAGCCTTCTTGTCTCATAGTCCAAGGGC
TTTCGCACAGTAATGATGCCTTCCTGTGTGTCCCTCTGTGTCACGATGTCAAACATATCTGTCCCATCACCATCTATGA
TTCTGTATTCTACTTCTGCATTTTTTCCAGTGTCTGCATCTGTGGCTTTGACGCTGCCAATAGGTGTCCCAACTGGAGA
ANACTCAGGAATGCGGAGGTGGATGGTACTCTGGGGNAAATCGAGGTGGATTGTCATTGACATCAGTCAAAGTGATGTT
CACAGTGGTGGTCCCTGATATCNCCCCCNTCTGG
Stage
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Location (click to highlight)
Comments (click to highlight)
4-6
stage 4
stage 5
Unlabeled
7-12
stage 10
stage 10
stage 12
Extraembryonic Mesoderm
Forebrain
Heart
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Spinal Cord
25-26
stage 26
stage 26
stage 26
stage 26
Spinal Cord
Spinal Ganglia and Nerves
Wing Mesenchyme
Entry 2
GEISHA Id
CDH10.Abellan.2009
Data Source
Publication
Complete cDNA Template Probe
show
GGATCCCTCAAATACATTTTGTCAGGAGATGGGGCTGGTACTCTTTTTATAATTGATGAGAAAACAGGTGACATTCATG
CTACTCGGAGAATTGACAGGGAAGAGAAAGCCTTTTACACTCTGCGTGCCCAAGCTATTAACAGAAGAACTCTGAGACC
AGTGGAACCTGAATCTGAGTTTGTCATCAAAATCCATGACATCAATGACAATGAACCAACATTTCCAGAAGAAATTTAT
ACTGCTAGTGTTCCTGAAATGTCTGTCGTGGGTACCTCTGTGGTGCAAGTCACAGCTACGGATGCCGATGACCCTTCAT
ATGGTAACAGTGCCAGAATCATTTACAGCATACTTCAAGGACAGCCGTATTTCTCTGTGGAACCAGAAACAGGCATCAT
CCGGACTGCTTTGCCAAATATGAACAGAGAGAACAGGGAGCAGTACCAAGTGGTTATCCAGGCAAAGGACATGGGAGGC
CAGATGGGTGGATTATCAGGGACCACCACTGTGAACATCACTTTGACTGATGTCAATGACAATCCACCTCGATTTCCCC
AGAGTACCATCCACCTCCGCATTCCTGAGTCTTCTCCAGTTGGGACACCTATTGGCAGCATCAAAGCCACAGATGCAGA
CACTGGAAAAAATGCAGAAGTAGAATACAGAATCATAGATGGTGATGGGACAGATATGTTTGACATCGTGACACAGAGG
GACACACAGGAAGGCATCATTACTGTGCGAAAGCCCTTGGACTATGAGACAAGAAGGCTTTATACCTTGAAAGTAGAAG
CTGAGAATACACATGTG
Citation
Abellán A, Legaz I, Vernier B, Rétaux S, Medina L. Olfactory and amygdalar structures of the chicken ventral pallium based on the combinatorial expression patterns of LIM and other developmental regulatory genes. J Comp Neurol. 2009 Sep 20;516(3):166-86.
Copyright
Copyright © 2009 Wiley-Liss, Inc.
Comments
The sequence below was obtained from NCBI (acc # NM_214673.1) - Showing 807 bp region from base 497 to 1303 using the information provided in the publication.
Stage
Image (click image to view full size)
Location (click to highlight)
Comments (click to highlight)
31-42
stage 38
stage 38
stage 38
stage 38
stage 38
stage 38
stage 38
stage 38
stage 42
stage 42
Telencephalon
frontal section
oblique horizontal section
Mouse
Emage
MGI:107436
MGI GXD
MGI:107436
Frog
Xenbase
1012078
Fruit Fly
BDGP
Zebra Finch
ZEBrA
Zebrafish
ZFIN
ZDB-GENE-060614-1
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