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JARID2
jumonji and AT-rich interaction domain containing 2

Gene
Official SymbolJARID2
Official Full Namejumonji and AT-rich interaction domain containing 2
CGNC ID9637
also known asprotein Jumonji|jumonji, AT rich interactive domain 2 protein|jumonji/ARID domain-containing protein 2
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Sequence Information
Genomic
RNANM_001012862
PolypeptideNP_001012880
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly39103FBgn0036004
Human3720ENSG00000008083MIM:601594
Mouse16468ENSMUSG00000038518All phenotypic alleles (7):Targeted, other(4) Gene trapped(3) MGI:104813
Xenopus100217357, 495062, 495842982165
Zebrafish558456, 100007426ENSDARG00000062268, ENSDARG00000060925ZDB-GENE-060503-246, ZDB-GENE-061218-1ZFIN:ZDB-GENE-060503-246, ZFIN:ZDB-GENE-061218-1
Gene Ontology
Molecular FunctionDNA binding, chromatin binding, histone demethylase activity
Biological Processmulticellular organismal development, negative regulation of histone methylation, more...negative regulation of transcription, DNA-templated, positive regulation of histone H3-K9 methylation, stem cell differentiation, transcription, DNA-templated
Cellular ComponentESC/E(Z) complex, histone methyltransferase complex, nucleus
Links to other databases
Entrez Gene420839
Ensembl GeneENSGALG00000012702
KEGGgga:420839
GEISHA IdJARID2.Olivera-Martinez.2014Data SourcePublication
Complete cDNA Template Probeshow
GCCCCGGCGCCACGGACCTGCAGGCGGAGGGAAGGGGAGAGCAAGGGCGTCGCTTTCCGTGCCGAGAAAGGGGGGGGGT
TTCGTCGTGACCATGTCTCGCTGAAGTGATTTTTTTTTTTGTGTGTGTGTGTGTGTGCCGTTCCCTTCGCATCCGATTT
TTTCTTTTTTTTTTTTTTTTTTCCTTCGCCATCCCCGCACCTCGGATTTATTGCTAGGAGGATCACATTGTGCGGGAAG
AAAGTGGGATTACGGAGACCGCCGCGAGCAGCCCCCTCCCCCCCGAGGATTTTTCGGTACCTTTATTTTATTTTATTTT
ATTTTTTTCCCCCCCCCGAATCGCCGCGGCCGTAATTCATGAAGCAATCGTCCCCTTTTTACATCAGAATCTGGATACC
AGAATGAGCAAAGAAAGACCCAAGAGGAATATAATTCAAAAGGAATACGATGACAGCGATGGGATTCCCTGGTCAGAGG
AGAGGGTGGTGCGGAAGGTCCTTTATTTATCTCTGAAGGAGTTCAAGAACGCACAGAAGCGGCAACATGGTGATGGCAT
TAGTGGAAGCCTGAAGGCAGTGAACGGACTTCTCACTAATGGCCAATCTAAAGGATTAGAGTCAGAGCAGCTGGAGAAT
GAAAAGGACGATGCATCGCAGGTGTCCTCAACGAGCAACGATATTAGTTCTTCAGATTTTGAAGAAGGGCCCTCGAGGA
AAAGGCCAAGGCTGCAAGCACAAAGGAAGTTTGCTCAGTCCCAGCCAAACAGTCCCAGCACAACTCCAATAAAGATAGT
GGAGCCGTTGTTACCCCCTCCCGCCACTCAGATTTCTGACCTCTCCAAAAGGAAGCCCAAGACAGAAGATTTTCTTACT
TTCCTCTGTCTTCGAGGTTCTCCAGCCCTGCCCAGCAACATGGTATATTTTGGAAGCTCTCAGGATGATGAGGATGAAG
AAGAGGAAGAGGAGGAGACAGAGGACACAAAAACAGCCACAAACAATGCTTCATCATCATGCCAGTCAACCCCCAGGAA
AGGAAAGACGCATAAACAAGTTCCAAATGGGCAAGTTTTCAATGGATCCAGCAAATCATTGAAGGAGAAAGAACCTGCC
CAGAAACACAAAAGCAAAGAGGCCACACCAGGGAAGGAGAAGAACAGCGAACATAAGGCTGAGAGTCGAAAAGACCAGG
CTGCTGCTAATCACCATCCTACTACAAACACTGGCTCCTCTACGAAAGGGCTCACTGCTAACAACCACCACACTCTTCA
TAGATCGGCTCAGGACTTAAGAAAACAGGTTTCTAAAGTCAACGGAATCACTCGAATGTCATCTCCGAGTGCAAATGCA
GCCAGTGCCAAAAAGATGAGAGACGTCAGACCTTCACCGTCCAAAACTGTGAAGTATACTGCAACGGTGACAAAGGGAA
CTGTCACATACACCAAAGCCAAGAAAGAACTGGTCAAGGAAACCAAACTAAATCACCACAAACCCAGTTCACCTGTCAA
CCACACAATCTCAGGGAAACTAGAAAGTAGCAATGCAAAAACCCGCAAACAGGTGCTATCCCTTGGAGCATCCAAGTCT
AACAATACCGCTGTTAATGGTGTAAAAGTCAATGGCAAGTTGAACCAAAAGACATGCACTAAGGAGGTGGGGAGACAGT
TGAGGGAGGGGCTGCGCAATTCGAAGAGGAGGCTGGAAGAGACTAATCACATAGACAAAATACAGTCGCCCACCAAGAG
GATGAAAGGGGCCGTCAACTTGGCAGAAGCTGCGAGCAAAAAGGCAGTTGTCGAAAAGCCTTTGCTGAATGGACACCTT
AAAAAGGAAGTGCCAGAGAAGAATTTGGAAAGAAATAGGCCGAAAAGAGCCACTGCTGGAAAGAGTACGCCAGGGAAAC
AAGCACATGGCAAAACTGAAAATGCCTCCTGTGAAAATCGTTCTACCTCTCAAGCGGAGTCCTTGCACAAGCCACAAGA
CTCAATGGGAAAGCACGAAAAGGGCAGTAGTAAGTCTGGGTGGGGGATGCTGGGGGAGATTCCCATCCTTAGGCCCTCC
ACCAAGGAATTTCATGACCCACTGATATACATTGAGTCAGTCCGAGCTCAGGTAGAGAAGTATGGGATGTGCAGGGTGA
TTCCTCCTCCAGACTGGAGACCTGAGTGCAAGCTAAACGATGAAATGCGGTTTGTGACACAGATTCAGCACATACACAA
GCTAGGCAGGCGCTGGGGACCCAACGTGCAGCGGCTGGCCTGTATCAAGAAGCACCTCAAATCTCAGGGCATTACCATG
GACGAACTCCCACTCATAGGAGGCTGTGAGCTCGATCTGGCCTGCTTCGTCCAGCTGATCAACGAGATGGGGGGGATGC
AGCAAGTGACTGACCTCAAGAAATGGAACAAACTGGCAGACATGCTGCGCATCCCCAAAACTGCACAGGACAGGCTGGC
CAAGCTGCAGGAAGCCTACTGCCAGTACTTGCTCTCCTATGACTCCCTCTCCCCTGAGGAGCACAAGAAACTGGAGAAG
GAGGTCTTGCTGGAAAAAGAAATCTTGGAGAAGAGGAAAGGACCTTTGGAGGGACATTCGGAGAATGCCTACAAGTTCC
ATTCCTTGCCCCGGTTTGAGCCCAAAAACGGACTCATCAACGGCGTGGTTCACAAAAATGGCTTCCGCAACAAGTTAAA
AGAGGTCGACGTCCCACTGAAGACGGGCAGGCGGCGGCTCTTCGCTCAGGAAAAGGAGACCACAAAGGATGACGAGGAG
GAAGAGGAGGAGGGAGTTCTTAGTGACTTACACAAGTGTATATACAAGGGTAGGTCTGTTTCTTTAACAACCTTCTACC
GAACAGCAAGAAACATCATGAACATGTGCTTCACGAAGGAGCCTACAGTAGCTGAAGTAGAGCAAGAATATTGGCGGTT
AGTGGAACAGAAAGATAGCCATGTAGCAGTGCATTGTGGAAAAGTAGATACCAACACCCATGGGAGCGGCTTTCCTGTG
GGGAAATCTGAACCATTTTCTAGGCATGGGTGGAACCTCACAGTCCTTCCTAATAATACAGGATCCATCCTGCGACATC
TTGGTGCTGTGCCTGGAGTGACAATTCCTTGGCTAAATATTGGCATGGTCTTTTCTACCTCATGCTGGTCTCGAGACCA
AAATCACCTTCCATACATTGACTACTTACACACTGGTGCTGATTGCATTTGGTATTGCATTCCTGCTGCGGAGGAGAAC
AAACTTGATGATGTGGTACATACCCTGCTGCAAGCCAATGGCACTCCAGGGCTGGAAATGCTTGAAAGTAATGTAATGA
TCTCCCCAGAAATCTTGTGTAAGGAGGGGATCAGGGTGCACCGTACTGTACAGCAGAGCGGGCAGTTTGTTGTCTGTTT
TCCTGGATCCTTTGTGTCTAAAGTGTGTTGTGGCTATAGTGTTTCTGAAACAGTGCACTTTGCTACCACCCAGTGGACA
AGTATGGGTTTTAAAACAGCCAAGGAAATGAAGAGGCGACGTATAGCCAAACCATTTTCAATGGAAAAGTTGCTTTATC
AGATTGCAACAGCAGAAGCAAAAAAGGAAAATGGACCGACTCTGAGTACGATATCATCACTTCTTGGGGAGCTCAGGGA
CACGGAGCTGAGGCAGCGGCGGCAGCTTTACGAGGCAGGTCTCCACTCCTCGGCGCGCTATGGCAGCCACGACAGCAGC
AGCACGGCGATGGATGGAAAGAAAAAGCCTCGAAAGTGGTTGCAGTTAGAAACGTCAGAGAGGAGATGTCAGATTTGTC
AGCACCTGTGCTATCTGTCCATGGTTGTACAGGAGAACGAAAATGTTGTCTTCTGCTTGGAGTGTGCCCTGCGGCATGT
GGAGAAACAGAAGTCTTGTCGGGGATTGAAAATGATGTACCGCTATGATGAGGAACAAATAATCAGTCTGGTCAATCAA
ATCTGTGGAAAAGTATCTGGTAAAAATGGCAGCATTGAGAACTGTATCAGCAAGCCCACACCAAAAAGAGGACCTCGGA
AGAGAGCGACAGTCGACGTGCCATCATCCAGGCTTTCATCCTCCAGTTCATCCAAAAGTGCTTCAAGTTAATCCTGAAG
ATGCCAACACTCTCATTTTGTCAATTTATATATATTTTTTGTAATTATTATACCATAGTTTGGAGTACTTGCTGTAGAA
TACAAGCTGTCTTTGCACTAGCTCTAAAGAAGATTTTCTTCTGGTTTTAGAGAACTAATTTTGTTTTAGCATTAAACTG
TTGAATTTTTTTTTGTACTTAGGATAGGTAGATACAGCAGTCTGATTTTTTTAAACTGCCGTACGTTCACTGTTTTAAA
AGCGACGAGAGGGGCTGATAAATATTAATTTGTATTGTCCCCGTGGCTGAGAAAATAAAGAGCCTTTTTGGTAACGGTG
AAAAAAGGCTTTTAACCCATTTTTTGACTAGGTTGAAGTTGGATGTGTTTTATAATTTGTTCTCCAGTCATGTGAGCAG
ATTTTTCTAGAGCGAAAAGGGATGGGAGACAAAAAAAAAAAAAAAAAACTTGAAAGAAATTGCTTTACTTTGGCTGTCT
TTTATTCTGTCACAGCAAGCGGAGTTTTGTAATTTTTTAAATTGGAGACTACACACTTACTTTCTTTGGGAGGTTATGG
CAGCTGAAGATGGACTTTGTTTCCTAACTGTAGGCAAAAGGAGGAGAGTTGGAGTATGTTCTCTTTTACCAGCACATCA
CTATGCATCTGTTTGGAGGGGGAAAATAAATAATAAAAAAATAAAAAAATAATAAAAAAATAAAAAATAAAAAAGGAGG
AAAAAAGACTGCCTGCCTTGAGGAGTCACGTGAGGGAAAACTGTGCCTGATTTCATTAGGAAATCCATTCTGTTATTTT
TTGGTGCTGTTGGCTACTTTATCAAAAACCCTTCAATAGCATCCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
CitationIsabel Olivera-Martinez, Nick Schurch, Roman A Li, Junfang Song, Pamela A Halley, Raman M Das, Dave W Burt, Geoffrey J Barton, Kate G Storey. Major transcriptome re-organisation and abrupt changes in signalling, cell cycle and chromatin regulation at neural differentiation in vivo. Development 2014 Aug;141(16):3266-76. Epub 2014 Jul 25. DOI: 10.1242/dev.112623.
CopyrightCopyright © 2014. Published by The Company of Biologists Ltd.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence above was obtained from NCBI (accession number NM_001012862.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-10
stage 10
Neural Plate/Tube
Primitive Streak
 
all
 
  

Mouse

EmageMGI:104813
MGI GXDMGI:104813

Frog

Xenbase982165

Fruit Fly

BDGPFBgn0036004

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-060503-246, ZDB-GENE-061218-1
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