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CNTN6 contactin 6 Gene Summary Expression Other Species Expression JBrowse Gene Official Symbol CNTN6 Official Full Name contactin 6 CGNC ID 5994 also known as contactin-6, contactin-6 gene type protein-coding
Genomic Map Sequence Information Gene Expression Orthology Gene Ontology Molecular Function Biological Process Cellular Component
Links to other databases
GEISHA Id CNTN6.Yamagata.2012 Data Source Publication Complete cDNA Template Probe show ATGGACCTTTGGAGTCATCACAAAAAAAAAGTGGAGCTGACCAACACTAGCAGTGGTAAAAATTATCCGGGCTTAATTA ATCAAATCCACTTAAGACATTGTCTAATCTTAAATTATTGTTTTTGTTTTGCAGAGGAAGAAACACTACATGGTCCTAT TTTCATTCAAGAGCCATATGATATCACTTATTCCATGGGCTCAGTGAATCCAGAAGTCCTATTGAACTGTACAGCTAAA GGATATCCCCTCCCCAGCTACAGGTGGAAGCAAAATGGCACAGATATTGATCTTACCATGAGTTATCACTACAGGTTGG TTGGAGGCAGCTTGGCAATCAATAACCCACGTAAAAAACAGGATATTGGAACATACCAGTGTTTGGCCACAAATTCATT TGGAACAATTCTGAGCAGGAAGGCAAAGCTTCAATTTGCATACCTTGAGAATTTTGAAATGAAAACAAGAAGCACAGTG TCAGTCAGAGAAGGACAAGGGGTGGTTCTGCTCTGCGGTCCTCCGCCACATCATGGAGGCTTGTCCTTTGCGTGGACCT TCAACAATAACACCTTGTACGTTCAGGAGGACAGACGCCGTTTTGTTTCACAAGAAACAGGAAATCTGTACATTGCCAA AGTGGAGCCATGGGATGTGGGCAATTACACCTGCGTGGTGACCAACTCCAAGGCTGGGCGGAGTGTTCAGGGGCCACCC ACTCCCCTCACCCTGCGCAGCGATGGTGTGATGGGAGAGTATGAACCAAAGATTGAAGCACGTTTTCCAGAAACAACAT ACGCAGCAAAGGGCTCATCTGCTAAACTGGAGTGTTTTGCCCTTGGAAATCCAGTCCCTAGTATCAGTTGGAGGAGGTC TGATGGAAACTCACTGACAAAGAAAATCAAACACGACAAAAACAAAGGAGTTCTTGAAATCCCAGATGTTCAGCAAGAA GATGGAGGCTCTTATGAGTGTATCGCAGAAAATATTCGAGGCAGAAACATTGCAAGAGGTCAATTATTCGTCTATGCAC TCCCTGAATGGGATAAGAAAATTGAAAATGCCTTTCTGTCTCTCTATGACAGTTTGTTTTGGGAATGTAAGGCAAAAGG AAAACCAACCCCTTCCTACAGCTGGTTAAAAAATGGCCAGCCTCTCATGTCAGAGGAGAGAATTCAAGTGGAAAATGGA ACTCTTATCATACCAATGCTGAATATGTCAGACTCTGGCCTCTATCAATGTGTGGCAGAAAACAAGTACGATACTATTT ATGCCAGTGCTGAATTGAGGGTTATAGCTGCAGCCCCCGATTTTTCCAAAAACCCCGTGAAAAAAACATCCATTGTTCA AGTTGGTGGTGAAGTCACCATTGGTTGTAGACCAAGTGCTTCTCCCAGAGCAGCTATTGACTGGAGAAAGGGCCCCGAG GTGCTGCGCCTGAACAAAAGGGCCCTCTTACTGGAGGATGGCAGTCTCAGGCTTTACAACATCACCAAATCAGATGCTG GGGTGTACACTTGTATAGCAACAAATCAGTTCGGAGTTGCCAGAAATTCAGGGAACCTGATTGTGAAAGAAAGGACTGT AATTACTATTGCACCTTCTAACATGGATGTAACAGTTGGAGAAAGCATAGTCCTTCCATGCCAGGTTTCTCACGACCCC TCCATTGCTGTGGCGTTCACGTGGTCATTCAGTGGCAACCAAATTGACTTTAAAAGAGGAATGCCTCATTTTGAGAGAA TTGGAGGAGAATCTGTTGGAGATCTGATGATAAGAAATATTCAACTTCATCATTCTGGGAAATATGTGTGCATGGTGCA GACAACTTTAGACAGTCAATCTACAGCAGTAGATATAATTGTAAGAGGTCCCCCAGGCCCACCAGAAGATGTTAGAGTT GAACATATTTCTAGCACTACTGCCGTGTTATCCTGGAAATCTGGAAAAGATAACAATAGTCCGGTCCAGATCTACAGCA TTCAAACAAGGACTCCTTTCTCAGTTGGATGGCAGGCAGTTTCAACAGTTCCTGAAGTCCTCAATGGTAGGACTCACAA AGCAACAGTGGTTGACTTAAGCCCTTGGGTTGAGTATGAGTTCCGTGTAGTTGCCAGAAACAGTGTTGGAACTGGAGAG CCAAGCAAGCCATCAGCTCTACTGAAAACCAAAGCAGCAGTTCCCACAGTGGCACCAACCAACGTCAGTGGAGGAGGAG GGAGCCGCTCAGAGCTGGTCATCACATGGGAGCCAGTGCCAGAAGAACTACAAAATGGAGAAGGTTTTGGCTATATCAT TATGTTTCGTCCTCTTGGCTCAACAACGTGGACAAAAGCAGCAGTGGCTCCCATAGAAGCAAGTAAATATGTTTATAGG AATGAAAGCATTACACCTCTGTCTCCTTTCGAAGTGAAAGTTGGTGTCTACAACAATGAAGGAGAAGGGACCCTGAGCT CCATATCCATTGTCTACGCTGGAGAAGATGAGCCACAGATAGCACCAGCAGGCACTTCAGCACTGAGCATCTCGGCAGC AGAGGTGGAGGTCTCCTGGCAGCCCGTTGCATGGAACAGGCACACAGGCAGGGTGCTGGGCTATGAGGTTTTATATTGG ACTGATGATCCCAAGGAAAGCACAGCTGGTAAAGTCAGAGTCAATGGGAACGTAACAGCCAAAAATATCACAGGCCTAA AAGCTAACACAGTGTATTTTGCAACAGTTCGGGCTTACAACACAGCAGGGACGGGGCCCTCCAGTGCCCCAGTAAATGT CACCACTAAAAAGTCACCACCCAGTCAACCTCCAGCAAATATCGCGTGGAAACTGACGAATTCCAAAATCTGCTTGAAT TGGGAACACGTGAAAACAATGGAGAATGAATCAGAGGTGCTAGGCTACAAAATTTTGTACAGACAAAACAGGCACAGCA AAGCTCATATACTGGAGACAAACAACACTTCAGCTGAACTTCTGGTGCCATTCGAAGAAGATTATCTCATAGAAATAAG AACCATTAGTGATGGTGGGGATGGCAGTAGCAGCGAGGAAATTAGGATCCCAAAAATATCAAGTTTAAGCTCTGGAGGA ATAAAACTGTCCCCAAGAGAACTGTATACACTGGCATCTGGGATCCTACTCTTGAGTTTTGTTCTTACATATTCTTTTC CTTGATGACTGAAGCAATGGACTTCTAAAATTGAACTACCTGTAGATTCTGTCTTAATACTTTATCACAACCAAAATTT TCAGTAAAGAAAAATA
Citation Yamagata M, Sanes JR. Expanding the Ig superfamily code for laminar specificity in retina: expression and role of contactins. J Neurosci. 2012 Oct 10;32(41):14402-14. 10.1523/JNEUROSCI.3193-12.2012. Copyright Copyright © 2012 the authors Comments According to the authors, "Full-length chicken cntn1, 2, 4, and 5 cDNAs and partial chick cntn3 and 6 cDNAs were amplified from oligo-dT-selected mRNA from embryonic day (E) 15 chick retina and optic tectum, using SuperScript III (Life Technologies), and Phusion high-fidelity thermostable DNA polymerase (New England BioLabs), and the products were cloned into pCR8-TOPO (Life Technologies)." As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence was obtained from NCBI (acc# XM_425170.3).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 31-40
stage 40
stage 40
Unlabeled
Mouse Frog Fruit Fly Zebra Finch Zebrafish