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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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PCDH1
protocadherin 1

Gene

Official Symbol	PCDH1
Official Full Name	protocadherin 1
CGNC ID	50187
also known as	protocadherin-1, protocadherin-1\|cadherin\|protocadherin 1 (cadherin-like 1)
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_001045827
Polypeptide	NP_001039292

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	5097	ENSG00000156453		MIM:603626
Mouse	75599	ENSMUSG00000051375	All phenotypic alleles (2):Targeted, knock-out(2)	MGI:104692
Xenopus	100124985, 100337580, 100124722, 100191020			983602, 1007356
Zebrafish	572016, 100006496	ENSDARG00000036175, ENSDARG00000062720	ZDB-GENE-091116-32, ZDB-GENE-091015-2, ZDB-GENE-091116-32	ZFIN:ZDB-GENE-091116-32, ZFIN:ZDB-GENE-091015-2, ZFIN:ZDB-GENE-091116-32

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	416194
Ensembl Gene
KEGG	gga:416194

Entry 1

GEISHA Id	ChEST873m17	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show GCGGCTCGAGCAACGGAGGACGAGGAGGAGACAGGGCTGCAGAAATCCCTCAAGTTCAACTTGATGAATGACTATGTCA GTGACAGCCCCCGCATCCACCTGCCCCTCAACTACCCTCCGGGCAGCCCGGACCTGGGCCGGCACTACCGCTCCAACTC ACCCCTGCCCTCTATCCAGCTGCAGCCCCAATCTCCCTCTGCCTCCAAGAAGCACCAAGTGGTGCAGGACCTGCCTGCC ACCAACACCTTTGTTGGCACCGGGGACAACAACTCAACGGGTTCCGAGCAGTACTCGGACTACAGCTACCGCACCAATC CCCAGAAATACACCAACAAGCAGGTAGGAGAGCTCATCCTGAGGCCTGCAGCGGCCCCCCCGCTGCACCGGGGACCCAT CTGGACCGAGGTGTGGGAGTGAGCTTGGACTGCAGGGCGGGGAAGGGACGGGGACAGAAGAGCATCGCAGCCCTTGTCA CAGTGCCCGGGGCTGGGACCTGGGTGGTGGTGACACACAGGTTGCTGCATGCCTGTACCTCTGCATGGGGAGCGCCGGG GGGATACCCACCCAACTGGGTATTCTCTGGGGACTGGCAGCCAGTGGGGCAATGTGAGCACAGAGCTGTGTCCAGCTCC CTGTGCAAAAACTGGAGCACAGCACCTGCTGGGCTGCCTGGGCAGGTGGGGCTGGGCGGGGGAACAAAACACTGCCTTT TTCCCAGGCTTGGGTTCTGCCTTCCCCAAGGCTTGAGCCTTCTGCCCTCACTGGCACGGTGAAAATCA
Comments	no specific expression detected stages 4-23.

no images

Entry 2

GEISHA Id	PCDH1.Lin.2012	Data Source	Publication
Complete cDNA Template Probe	show GAGATTCGGGGCATTGGGTTGGTCACCCACCAGGATGGCATGGCAAATATCTCGGAGGACGTACCAGTAGAGACAGCAG TGGCTCTGGTACAGGTGTCCGACCGAGATGAGGGTGAGAATGCTGTAGTGACCTGTGTGGTGGCTGGTGATGTTCCCTT CCAGCTGCGGCAGGCTAGTGAAACAGGGAGTGACAGCAAGAAGAAATACTTCCTGCAGACTACCACACCTCTGGACTAT GAGTCGGTGAAGGACTACACAATCGAGATTGTGGCAGTGGACTCGGGGAACCCGCCCCTTTCCAGCACCAACTCGCTGA AGGTACAGGTGGTAGATGTAAATGACAATGCGCCCGTCTTCAGCCAGAGCTTCACTGAGGTCGCCTTCCCTGAGAACAA CGAGCCCAATGACCTAGTGATGGAGGTGAGTGCCAGCGATGCAGACAGTGGCTCCAATGCCAAGCTGGTTTACTCACTG GTGACTGACCCATCCTCCAAGGACTCCTTCACCATTGACCCCGACTCTGGGGAGATTCGAGTAAAAGCGGTGCTGGACC GTGAGCAGCGGGAGCGCTATGAGTTCTTGGTGGTGGCAGCAGACAAGGGCAGCCCCAGCCTGAAGGGCACAGCGTCGGT GGCCATCAACGTCATGGATAGGAATGACAACGACCCCAAGTTCATGCTGAGCGGCTACAACTTCTCGGTGATGGAGAAC ATGCCACCCCTCAGCCCTGTGGGCATGGTGACGGTGATCGATGCTGACAAAGGAGAAAATGCCCGAATCCAGCTGTCGG TAGAGCAAGACAATGGTGATTTTGTCATCCAGAATGGCACCGGCACCATTCTCTCCAGCATCTCTTTTGACCGGGAGCA GCAAAGCACGTACACTTTCCGGCTCAAGGCTGTGGACGGTGGGGATCCCCCCAGGTCTGCCTATGTAGGGGTGACCATC AATGTCTTGGATGAGAATGACAATGCTCCCTTCATCACCTCGCCCTCCAATGCCACCTACAAGCATATTCTGCCTCACA CCAGCCCTGGTCAGCAGGTGAGCAAGGTCAAGGCAGAGGACATCGACACTGGCGTCAATGCCGAGCTGACCTACAGCAT CACAGGAGGCAACCCCTTCGAGCTCTTCCAGATCTCTCCCCAAAGTGGAGACATCACGTTGGAGAAGGAGATCCTGCGC AAGCACCATGGCCTGCACCGCTTGGTTGTGCGCGTCAATGACAAAGGCAAGCCATCACGGCACGGCACAGCCCTGGTTC ACTTCTATGTCAACGAGACTTTGGCCAACCGCACACTACTGGACACGCTGGTGGGGCACAGCCTGGACACACCACTTGA CATAGACATCGCTGGGGACCCTGAGTACGAGCGCAGCAAGCAGAGAAGCAACATCCTCTTTGGAGTCATTGCCGGCATT GTGGCTGTCACCTTGGTCATTGTGCTGGTTGTCCTGGTGCGCTACTGCCGACAGCGGGAGGCCAAGAGTGGCTACCAGG CAGGCAAGAAGGAGACCAAAGACCTGTATGCGCCCAAGCAGGCCAGCAAGAGCGGCAAGAGCAAAAACAAAGTGAAGAA GAGCAAGTCCCCAAAGCCACCCAAGCCAACGGAGGACGAGGAGGAGACAGGGCTGCAGAAATCCCTCAAGTTCAACTTG ATGAATGACTCTGTCAGTGACAGCCCCCGCATCCA
Citation	Lin J, Wang C, Redies C Expression of delta-protocadherins in the spinal cord of the chicken embryo. J Comp Neurol. 2012 May 1;520(7):1509-31.
Copyright	Copyright © 2011 Wiley Periodicals, Inc.
Comments	The cDNA template used to generate the probe was obtained by PCR as described in the paper.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-18

stage 18

Dermomyotome
Neural Plate/Tube
Notochord

Higher magnification of boxed area in D.

19-24

stage 20

stage 24

Neural Plate/Tube
Notochord
Spinal Cord
Spinal Ganglia and Nerves

ncc, neural crest cells

25-30

stage 29

stage 30

Blood Vessels
Dermomyotome
Neural Plate/Tube
Notochord
Spinal Cord
Spinal Ganglia and Nerves

Higher magnification of boxed area in J.
Immunostaining: Islet1 in red
In situ hybridization: PC1 in green
PC1: green fluorescence
me, meninges

31-36

stage 34

stage 36

Blood Vessels
Neural Plate/Tube
Notochord
Spinal Ganglia and Nerves

Higher magnification of boxed area in L.
Higher magnification of boxed area in N.
Pc1: green fluorescence
dh, dorsal horn
lm, lateral motor column
me, meninges

Entry 3

GEISHA Id	PCDH1.Lin.2012B	Data Source	Publication
Complete cDNA Template Probe	show ATGCAGACGCCGCTGGATCAGCGCTCCGGGAGCCGGCACGGAGCGCAGCGCCGGCCGCATCCAACTCCCCTGAAACACA GGATGAGGACTCTCACCTCCTGCCTGGCCCTGTGGTTCCTCTGCCAGCTGCCTGCCCTGGCCTGTGGGACACGCGTGGT CTACAAAGTGCAGGAGGAGCAGCCCCCCAACACACTCATCGGCAGCCTGGCTTCTGACTACGGCTTCCCCGACGTGGGG CACCTCTACAAGCTGGAAGTGGGGGCCCCGTACCTGCGTGTGGATGGCAAGACAGGAGACATCTACACCACGGAGACTT CCATCGACCGGGAGAGTTTGCGTGAGTGCCAGCACCTGCTGCCCGGAGAGCCCTGCTACCTGGAGTTCGAAGTGTCCAT CACTGACCTGATGCAGAACAACAGCCCACGCCTGCTTGAGGGGCAGATTGAGGTGCTCGATATCAACGACAACACCCCC AACTTCGCCTCACCCGTCCTCACTCTGACCATCCCCGAGAACACCAATATCGGGACTCTCTTCTCCATCCCCCCAGCCA TGGACCGGGACTCGGGGCCCAACGGCGTTGCCTCCTATGAACTGCTGGCTGGCCCCGAGGCACAGGAACTCTTTGGGCT GCAGGTGGCTGAGGACCAGGAGGAGAAGCAGCCACAGCTGATTGTCATGGGAAACCTGGACCGGGAGCAGTGGGACTCC TACGACCTGACCATCAAGGTGCAGGATGGGGGCAACCCGCCACGGGCCAGCAGTGCACTGCTGCGCATCACCATCGTGG ACATGAATGACAATGCACCCAAGTTTGAGAAGGCCCTCTACGAGGCTGAGCTGTCTGAAAACAGCCCTGTGGGGCACTC CGTCATCCAGGTGAAGGCCAACGACTCGGACCAGGGTGCCAATGCCGAGATCGACTACTCCTTCCACCAAGCATCGGAT ATGGTGCGCCGGCTGCTGCGCCTGGACCGCAACACAGGGCTCATCACTGTCCAGGGGCCCATTGACCGCGAGGACGTCA GCATCCTCAAGTTCTCCGTCATGGCCAAGGACAAGGGGGCTAATCCCAAGAGTGCCCGCACGCAGGTAGTGGTCACCAT CAAGGATATGAATGACAACGCGCCCTCTATCGAGATTCGGGGCATTGGGTTGGTCACCCACCAGGATGGCATGGCAAAT ATCTCGGAGGACGTACCAGTAGAGACAGCAGTGGCTCTGGTACAGGTGTCCGACCGAGATGAGGGTGAGAATGCTGTAG TGACCTGTGTGGTGGCTGGTGATGTTCCCTTCCAGCTGCGGCAGGCTAGTGAAACAGGGAGTGACAGCAAGAAGAAATA CTTCCTGCAGACTACCACACCTCTGGACTATGAGTCGGTGAAGGACTACACAATCGAGATTGTGGCAGTGGACTCGGGG AACCCGCCCCTTTCCAGCACCAACTCGCTGAAGGTACAGGTGGTAGATGTAAATGACAATGCGCCCGTCTTCAGCCAGA GCTTCACTGAGGTCGCCTTCCCTGAGAACAACGAGCCCAATGACCTAGTGATGGAGGTGAGTGCCAGCGATGCAGACAG TGGCTCCAATGCCAAGCTGGTTTACTCACTGGTGACTGACCCATCCTCCAAGGACTCCTTCACCATTGACCCCGACTCT GGGGAGATTCGAGTAAAAGCGGTGCTGGACCGTGAGCAGCGGGAGCGCTATGAGTTCTTGGTGGTGGCAGCAGACAAGG GCAGCCCCAGCCTGAAGGGCACAGCGTCGGTGGCCATCAACGTCATGGATAGGAATGACAACGACCCCAAGTTCATGCT GAGCGGCTACAACTTCTCGGTGATGGAGAACATGCCACCCCTCAGCCCTGTGGGCATGGTGACGGTGATCGATGCTGAC AAAGGAGAAAATGCCCGAATCCAGCTGTCGGTAGAGCAAGACAATGGTGATTTTGTCATCCAGAATGGCACCGGCACCA TTCTCTCCAGCATCTCTTTTGACCGGGAGCAGCAAAGCACGTACACTTTCCGGCTCAAGGCTGTGGACGGTGGGGATCC CCCCAGGTCTGCCTATGTAGGGGTGACCATCAATGTCTTGGATGAGAATGACAATGCTCCCTTCATCACCTCGCCCTCC AATGCCACCTACAAGCATATTCTGCCTCACACCAGCCCTGGTCAGCAGGTGAGCAAGGTCAAGGCAGAGGACATCGACA CTGGCGTCAATGCCGAGCTGACCTACAGCATCACAGGAGGCAACCCCTTCGAGCTCTTCCAGATCTCTCCCCAAAGTGG AGACATCACGTTGGAGAAGGAGATCCTGCGCAAGCACCATGGCCTGCACCGCTTGGTTGTGCGCGTCAATGACAAAGGC AAGCCATCACGGCACGGCACAGCCCTGGTTCACTTCTATGTCAACGAGACTTTGGCCAACCGCACACTACTGGACACGC TGGTGGGGCACAGCCTGGACACACCACTTGACATAGACATCGCTGGGGACCCTGAGTACGAGCGCAGCAAGCAGAGAAG CAACATCCTCTTTGGAGTCATTGCCGGCATTGTGGCTGTCACCTTGGTCATTGTGCTGGTTGTCCTGGTGCGCTACTGC CGACAGCGGGAGGCCAAGAGTGGCTACCAGGCAGGCAAGAAGGAGACCAAAGACCTGTATGCGCCCAAGCAGGCCAGCA AGAGCGGCAAGAGCAAAAACAAAGTGAAGAAGAGCAAGTCCCCAAAGCCACCCAAGCCAACGGAGGACGAGGAGGAGAC AGGGCTGCAGAAATCCCTCAAGTTCAACTTGATGAATGACTCTGTCAGTGACAGCCCCCGCATCCACCTGCCCCTCAAC TACCCTCCGGGCAGCCCGGACCTGGGCCGGCACTACCGCTCCAACTCACCCCTGCCCTCTATCCAGCTGCAGCCCCAAT CTCCCTCTGCCTCCAAGAAGCACCAAGTGGTGCAGGACCTGCCTGCCACCAACACCTTTGTTGGCACCGGGGACAACAA CTCAACGGGTTCCGAGCAGTACTCGGACTACAGCTACCGCACCAATCCCCAGAAATACACCAACAAGCAGGTAGGAGAG CTCATCCTGAGGCCTGCAGCGGCCCCCCCGCTGCACCGGGGACCCATCTGGACCGAGGTGTGGGAGTGA
Citation	Lin J, Redies C. Histological evidence: housekeeping genes beta-actin and GAPDH are of limited value for normalization of gene expression. Dev Genes Evol. 2012
Copyright	© Springer-Verlag Berlin Heidelberg 2012
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. #NM_001045827.1).