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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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HOXA10
homeobox A10

Gene

Official Symbol	HOXA10
Official Full Name	homeobox A10
CGNC ID	16063
also known as	homeobox protein Hox-A10
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI

Sequence Information

Genomic
RNA	XM_001235692
Polypeptide	XP_001235693

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	3206	ENSG00000253293		MIM:142957
Mouse	15395	ENSMUSG00000000938	All phenotypic alleles (3):Targeted, knock-out(3)	MGI:96171
Xenopus	378640			478887
Zebrafish	30391	ENSDARG00000031337	ZDB-GENE-990415-97, ZDB-GENEP-000823-10	ZFIN:ZDB-GENE-990415-97, ZFIN:ZDB-GENEP-000823-10

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	776143
Ensembl Gene	ENSGALG00000026631
KEGG	gga:776143

Entry 1

GEISHA Id	HOXA10.Hughes.2011	Data Source	Publication
Complete cDNA Template Probe	show AAAACACAGGGAGAGCCGCGGCTTTATTAATTTCGTGACACACACACGGGCTGCTCGGGGAGGTGAGCACGCATCGCTT CCGGAGAGCCCGACCGCGGGGAGAGAGGAGCGATAATAAAAGCTTCATCTGGCCGCGGCCGCAGCCGGGGTGTCATAAA CACCGCCGCGCCGAGCGGTGCGTGGGGCAGAGCGGAGGGAGCCGGGAGCCGCCGCCTGCCCCGCTCCGGCCCTGCCCCG CCGCGCCGCTCCGCACGTGTGCGTGTGGCTGGAAATCCATATCGCGCATTAATATCCATCCATATCCCAAATTCAGAGG TCGACCTGAGAGCAGCTCGGTGCATACGAAACCAGACGGGGAGGGGTTGCTGGGGAGGCCCGGGCTTCCATTGGCTGCA AGCGTTCGCCGCGGTGCGGGGGTATCTCTAATCATATTCAGCATGTTTTGCACAAGAAATGTCAGCCAGGAAGGGCTAT CCGCTCCCTTCGCCAAATTATTCCACGACAATGTCATGCTCCGAGAGCCCGGCTGCAAACTCTTTCCTGGTGGACTCGT TGATCAGCGCGGGCAGAGGGGACGCGGCGGCAGCGGGAGGCGGAGGCGGAGGAGGAGGCGGCTACTACCCGGGCAGCGG GCTCTACCTGCCACAGGCGTCCGAGCTGTCCTACGGGCTGCAGGGCTGCGGACTGTTCCCCGTCCTGGGCAAACGCAAT GAAGGTACTTCGCAAAGCATGGTCCCCAGCACGCACCCCTACGTGTCGGGGATGGAAGTGTGGCTAGACCCGCCCCGCT CCTGTCGCATGGAAGAGCCGGAGAGCCAGCAGGCCACCTCGTGCTCCTTCGCTCAAAACATTAAGGAGGAGAGCTCCTA CTGCCTCTATGACTCAGAGAAGTGCCCCAAGGGCTCGGCCGCCGCCGACCTCGCTCCCTTCCCGCGGCTGAGCGCCGAG GTCAGCCCCTCCGCCAACGGCACCGGGGTGCCGGTCCCGGGCTACTTCCGCCTCTCCCAGGCTTACGGCACCTCCAAGG GCTACGGCGCGGGGCCGGCCGGGACGGCCCCCTTCGCTCCGCAGCCCCCCGGCCGCTTCCAGCCGCCGCCGTCGGGGCC GCCCGTGCCGGAGGCGGGCAGGAGGGAGGACGAGGAGCGCTCCCCCAGCCCCTCGGCGTGCGGCTCCCAGCGGGAGGAC GAGACCCGCGCTTCGTCGTCCACCGCCGAGGAGCTCTCCCCCGCGCCGTCGGAGGGCAGCAAGGCCTCTCCCGAGAAGG AGCCCGTAGGCAATTCAAAAGGAGAAAATGCAGCAAACTGGCTAACCGCAAAAAGTGGCCGAAAGAAACGGTGCCCCTA TACCAAGCATCAAACTCTCGAGCTGGAAAAGGAGTTTCTGTTCAATATGTACCTGACTCGTGAGCGTCGCCTAGAGATC AGCCGCACAGTCCACCTCACAGACAGACAAGTTAAAATCTGGTTTCAGAACCGCAGAATGAAACTGAAGAAAATGAACA GAGAGAATAGGATTCGGGAGCTCACAGCCAACTTTAATTTCTCTTGA
Citation	Hughes MW, Wu P, Jiang TX, Lin SJ, Dong CY, Li A, Hsieh FJ, Widelitz RB, Chuong CM. In search of the Golden Fleece: unraveling principles of morphogenesis by studying the integrative biology of skin appendages Integr Biol (Camb). 2011 Apr;3(4):388-407. Epub 2011 Mar 24.
Copyright	© Royal Society of Chemistry 2011
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # XM_001235692.1).

Stage

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Location (click to highlight)

Comments (click to highlight)

25-29

stage 26

stage 29

Dermis
Surface Ectoderm

epithelium
mesenchyme

Entry 2

GEISHA Id	HOXA10.Alvarez.2003	Data Source	Publication
Complete cDNA Template Probe	show TTTATTAATTTCGTGACACACACACGGGCTGCTCGGGGAGGTGAGCACGCATCGCTTCCGGAGAGCCCGACCGCGGGGA GAGAGGAGCGATAATAAAAGCTTCATCTGGCCGCGGCCGCAGCCGGGGTGTCATAAACACCGCCGCGCCGAGCGGTGCG TGGGGCAGAGCGGAGGGAGCCGGGAGCCGCCGCCTGCCCCGCTCCGGCCCTGCCCCGCCGCGCCGCTCCGCACGTGTGC GTGTGGCTGGAAATCCATATCGCGCATTAATATCCATCCATATCCCAAATTCAGAGGTCGACCTGAGAGCAGCTCGGTG CATACGAAACCAGACGGGGAGGGGTTGCTGGGGAGGCCCGGGCTTCCATTGGCTGCAAGCGTTCGCCGCGGTGCGGGGG TATCTCTAATCATATTCAGCATGTTTTGCACAAGAAATGTCAGCCAGGAAGGGCTATCCGCTCCCTTCGCCAAATTATT CCACGACAATGTCATGCTCCGAGAGCCCGGCTGCAAACTCTTTCCTGGTGGACTCGTTGATCAGCGCGGGCAGAGGGGA CGCGGCGGCAGCGGGAGGCGGAGGCGGAGGAGGAGGCGGCTACTACCCGGGCAGCGGGCTCTACCTGCCACAGGCGTCC GAGCTGTCCTACGGGCTGCAGGGCTGCGGACTGTTCCCCGTCCTGGGCAAACGCAATGAAGGTACTTCGCAAAGCATGG TCCCCAGCACGCACCCCTACGTGTCGGGGATGGAAGTGTGGCTAGACCCGCCCCGCTCCTGTCGCATGGAAGAGCCGGA GAGCCAGCAGGCCACCTCGTGCTCCTTCGCTCAAAACATTAAGGAGGAGAGCTCCTACTGCCTCTATGACTCAGAGAAG TGCCCCAAGGGCTCGGCCGCCGCCGACCTCGCTCCCTTCCCGCGGCTGAGCGCCGAGGTCAGCCCCTCCGCCAACGGCA CCGGGGTGCCGGTCCCGGGCTACTTCCGCCTCTCCCAGGCTTACGGCACCTCCAAGGGCTACGGCGCGGGGCCGGCCGG GACGGCCCCCTTCGCTCCGCAGCCCCCCGGCCGCTTCCAGCCGCCGCCGTCGGGGCCGCCCGTGCCGGAGGCGGGCAGG AGGGAGGACGAGGAGCGCTCCCCCAGCCCCTCGGCGTGCGGCTCCCAGCGGGAGGACGAGACCCGCGCTTCGTCGTCCA CCGCCGAGGAGCTCTCCCCCGCGCCGTCGGAGGGCAGCAAGGCCTCTCCCGAGAAGGAGCCCGTAGGCAATTCAAAAGG AGAAAATGCAGCAAACTGGCTAACCGCAAAAAGTGGCCGAAAGAAACGGTGCCCCTATACCAAGCATCAAACTCTCGAG CTGGAAAAGGAGTTTCTGTTCAATATGTACCTGACTCGTGAGCGTCGCCTAGAGATCAGCCGCACAGTCCACCTCACAG ACAGACAAGTTAAAATCTGGTTTCAGAACCGCAGAATGAAACTGAAGAAAATGAACAGAGAGAATAGGATTCGGGAGCT CACAGCCAACTTTAATTTCTCTTGATGAACCTATAAACACATCTTGATGGTTTAAAGAGCCAGTATCATTTTCCTAGGC TGTAGTCATCCGCACCTGTACGGATTAACGATTTTAGACGTTCTCAGTATGTCCTTAAACTCTTAATAGCTGCTTCGGG GCTGCGGGGGGAGCGGAAGAGAGCCACGCTAACGCTGAGGGCCATGTGTGAGCCTCCTCGGTTCCTGCAGCCTTTCCCG GGCCCGCTTCGCTCTTTCAAGCTTTGAAAACCCAGAAATAGGATTTCAGGAGCCGCAAATATTCCATCCATCCCTCCCC CCCCCCCCTTTCCCTCCCCCGTGTCTCTCCGAAAAGTAAACGAGCTCGGTTAAAGGCGCATTCTTCTAAAATATAGGCG GTGTAACTCGGACTGTGAGCAGCTTCGGAATGAATCATTTAAGCCGTGCCATACTTCTATATATTGGGAGCTCAGCTTT TTCCCCCCCTCTGTTTTCCTTGTCTCCCCCCTCCCCCTTTATCCTTCCCGAAGCAGGACTCGCAATAATGAAATGCAGG CATCCTTTAAAAGGGCTTCATGGGAACCGGTGTTAAGAGCCATTTTTTTGTTCTTTACCTTGAAAGTCAATATGACGGC TTTGAAATTGGCCAGGAAAATGAAATCTCTTCTCTTTAAAGATATATATATATATATATATATATATATATATATATAT ATATATATGTATTCGTCTCGCTCATGGACTAAATGATGACACTTACCTCTGAATTTCTCTCTCTCTTTCTGGTTGTAGA TATTTACGTAACGTAGTTTTGCTTAAAGATGTGGAATTAGTGATTTTTTTGTTGTTGTTGGTCGATTAATAGCGTTACC GTTGGTAACACGGGATAAGCACACAACGGTTCCCCCTTGAGAAAAAAAAAAACAATAAAAGGCCGTCACTTTTTCCTCA CTAATTTCACTGAAAAGTGTACATCCTGAACATCAAAAGGACTTTCTGAGCCAGAGCCTGAGATAGCGAGGGAGGGTTT GTCCGTCTTCCTTTATACTGTGAAGTTACGTGCATCAAAGGGTGAAACGTATAGGTGAAAAAGAGTAGACAGAGATTTT AAAAAGAAGAAAGAAAGAAGGGGAAAAGCTATAAATACAGATATGTATAAATGTCTATTATTATTAAAACGCCGATACC GTTTTAAGCAAATGCATTCTATCGTTATTATAAATGTTAGTTCTAGCTATATCTAGTTCTTACCTTAAATCGGAATAAA TTAATACTGTAATGCTGCTGTGCGTGAAAAAGACGATGTTTATGTTCTCATAGAAGAATAAAAGACGTGGAATGAA
Citation	Alvares LE, Schubert FR, Thorpe C, Mootoosamy RC, Cheng L, Parkyn G, Lumsden A, Dietrich S. Intrinsic, Hox-dependent cues determine the fate of skeletal muscle precursors. Dev Cell. 2003 Sep;5(3):379-90.
Copyright	Copyright © 2012 Elsevier B.V. All rights reserved.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI XM_001235692.3

Stage

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Location (click to highlight)

Comments (click to highlight)

13-18

stage 18

Lateral Plate Mesoderm
Somites

Entry 3

GEISHA Id	Hoxa-10.Nelson.1996	Data Source	Publication
Complete cDNA Template Probe	show ATGTCAGCCAGGAAGGGCTATCCGCTCCCTTCGCCAAATTATTCCACGACAATGTCATGCTCCGAGAGCCCGGCTGCAA ACTCTTTCCTGGTGGACTCGTTGATCAGCGCGGGCAGAGGGGACGCGGCGGCAGCGGGAGGCGGAGGCGGAGGAGGAGG CGGCTACTACCCGGGCAGCGGGCTCTACCTGCCACAGGCGTCCGAGCTGTCCTACGGGCTGCAGGGCTGCGGACTGTTC CCCGTCCTGGGCAAACGCAATGAAGGTACTTCGCAAAGCATGGTCCCCAGCACGCACCCCTACGTGTCGGGGATGGAAG TGTGGCTAGACCCGCCCCGCTCCTGTCGCATGGAAGAGCCGGAGAGCCAGCAGGCCACCTCGTGCTCCTTCGCTCAAAA CATTAAGGAGGAGAGCTCCTACTGCCTCTATGACTCAGAGAAGTGCCCCAAGGGCTCGGCCGCCGCCGACCTCGCTCCC TTCCCGCGGCTGAGCGCCGAGGTCAGCCCCTCCGCCAACGGCACCGGGGTGCCGGTCCCGGGCTACTTCCGCCTCTCCC AGGCTTACGGCACCTCCAAGGGCTACGGCGCGGGGCCGGCCGGGACGGCCCCCTTCGCTCCGCAGCCCCCCGGCCGCTT CCAGCCGCCGCCGTCGGGGCCGCCCGTGCCGGAGGCGGGCAGGAGGGAGGACGAGGAGCGCTCCCCCAGCCCCTCGGCG TGCGGCTCCCAGCGGGAGGACGAGACCCGCGCTTCGTCGTCCACCGCCGAGGAGCTCTCCCCCGCGCCGTCGGAGGGCA GCAAGGCCTCTCCCGAGAAGGAGCCCGTAGGCAATTCAAAAGGAGAAAATGCAGCAAACTGGCTAACCGCAAAAAGTGG CCGAAAGAAACGGTGCCCCTATACCAAGCATCAAACTCTCGAGCTGGAAAAGGAGTTTCTGTTCAATATGTACCTGACT CGTGAGCGTCGCCTAGAGATCAGCCGCACAGTCCACCTCACAGACAGACAAGTTAAAATCTGGTTTCAGAACCGCAGAA TGAAACTGAAGAAAATGAACAGAGAGAATAGGATTCGGGAGCTCACAGCCAACTTTAATTTCTCTTGA
Citation	Nelson CE, Morgan BA, Burke AC, Laufer E, DiMambro E, Murtaugh LC, Gonzales E, Tessarollo L, Parada LF, Tabin C. Analysis of Hox gene expression in the chick limb bud. Development. 1996 May;122(5):1449-66.
Copyright	Copyright © 1996 by Company of Biologists
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001305645).