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NTN1 netrin 1 Gene Summary Expression Other Species Expression JBrowse Gene Official Symbol NTN1 Official Full Name netrin 1 CGNC ID 49784 also known as netrin-1, netrin-1 gene type protein-coding
Genomic Map Sequence Information Gene Expression Orthology Entrez Gene Ensembl Gene Genetic Phenotypes MOD Fruit Fly Human Mouse Xenopus Zebrafish
Gene Ontology Molecular Function protein binding Biological Process anterior/posterior axon guidance , cell-cell adhesion , establishment of nucleus localization , more... inner ear morphogenesis , mammary gland duct morphogenesis , negative regulation of axon extension , neuron migration , positive regulation of axon extension , positive regulation of cell proliferation , regulation of cell migration Cellular Component basement membrane , cell periphery , cytoplasm
Links to other databases
Entry 1 GEISHA Id Netrin1.Guan.2003 Data Source Publication Complete cDNA Template Probe show CGCTTCAACATGGAGCTGTACAAGCTGTCGGGCAGAAAGAGCGGCGGTGTCTGCCTCAACTGCCGGCACAACACGGCCG GGCGGCACTGCCACTACTGCAAGGAAGGCTTCTACCGCGACCTCAGCAAACCCATCTCCCACCGCAAGGCCTGCAAAGA GTGCGATTGCCATCCCGTGGGCGCCGCCGGCCAAACCTGCAACCAAACCACGGGGCAGTGTCCATGCAAGGACGGCGTC ACCGGCATCACCTGCAACCGCTGCGCCAAGGGCTACCAGCAGAGCCGCTCGCCCATTGCCCCCTGCATAAAGATCCCCG CCGCGCCGCCCCCCACAGCTGCCAGCAGCACGGAGGAGCCTGCAGACTGTGACTCGTACTGCAAAGCCTCCAAGGGGAA GCTGAAGATCAACATGAAGAAGTACTGCAAGAAGGACTACGCTGTGCAGATCCACATCCTGAAAGCGGAAAAAAATGCC GACTGGTGGAAGTTCACCGTCAACATCATCTCTGTCTACAAACAGGGCAGCAACCGGCTGCGGCGCGGGGACCAGACCC TGTGGGTGCACGCCAAGGACATCGCCTGCAAGTGCCCCAAGGTGAAGCCCATGAAGAA
Citation Guan W, Condic ML. Characterization of Netrin-1, Neogenin and cUNC-5H3 expression during chick dorsal root ganglia development. Gene Expr Patterns. 2003 Jun;3(3):369-73. Copyright Reprinted from Developmental Biology, Volume 3, Issue 3, Wel Guan, and Maureen L. Condic, Characterization of Netrin-1, Neogenin and cUNC-5H3 expression during chick dorsal root ganglia development, Pages 369-373, Copyright 2003, with permission from Elsevier. Copyright © 2003 Elsevier B.V. All rights reserved. Comments The authors said: Netrin-1: bp 12351845 of L34549.
Entry 2 GEISHA Id Netrin1.Wilson.2006 Data Source Publication Complete cDNA Template Probe show GGCACGAGGGACCCAGCCCCGCCGCCAGCCGACTTTTGTGGGGCCGTCGCCTCTCCGCTCTCCCTTTCTCCGCGGGGTT TGGCCGCGGGGCGGGCGATGCTCCGCGCTCCGTGAGCCGCGCACCGCACCGCCTCCGCCGGCCGAGCGCCCCGCTCAGA GCCCCGCTGCGCCGCGCACGATGCCGCGGAGGGGCGCGGAGGGGCCGCTCGCCCTGCTGCTGGCGGCCGCGTGGCTGGC ACAGCCGCTGCGAGGCGGCTACCCCGGGCTGAACATGTTCGCCGTGCAGACGGCGCAGCCCGACCCCTGCTACGACGAG CACGGGCTGCCCCGCCGCTGCATCCCGGACTTCGTCAACTCGGCCTTCGGCAAGGAGGTGAAGGTGTCGAGCACCTGCG GGAAGCCGCCGTCGAGGTACTGCGTGGTGACGGAGAAGGGCGAGGAGCAGGTCCGCTCGTGCCACCTCTGCAACGCCTC CGACCCCAAGCGCGCCCACCCGCCCTCCTTCCTCACCGACCTCAACAACCCGCACAACCTGACGTGCTGGCAGTCCGAC AGCTACGTGCAGTACCCGCACAACGTCACCCTCACGCTGTCCCTCGGCAAGAAGTTCGAGGTGACCTACGTGAGCCTGC AGTTCTGCTCGCCGCGCCCCGAGTCCATGGCCATCTACAAGTCCATGGACTACGGCAAGACGTGGGTGCCCTTCCAGTT CTACTCCACGCAGTGCCGCAAGATGTACAACAAGCCGAGCCGCGCCGCCATCACCAAGCAGAACGAGCAGGAGGCCATC TGCACCGACTCGCACACCGACGTGCGGCCCCTCTCCGGCGGCCTCATCGCCTTCAGCACCCTGGACGGCCGCCCCACCG CCCACGACTTCGACAACTCGCCCGTGCTGCAGGACTGGGTGACGGCCACCGACATCAAGGTGACCTTCAGCCGCCTGCA CACCTTCGGCGACGAGAACGAGGACGACTCCGAGCTCGCCCGCGACTCCTACTTCTACGCCGTGTCCGACCTGCAGGTC GGCGGGCGCTGCAAGTGCAACGGGCACGCGTCCCGCTGCGTCCGCGACCGCGACGACAACCTGGTGTGCGACTGCAAGC ACAACACGGCCGGGCCCGAGTGCGACCGCTGCAAACCCTTCCACTACGACCGGCCCTGGCAGAGGGCGACCGCCCGAGA GGCCAACGAGTGCGTGGCCTGCAACTGCAACCTGCATGCACGGCGCTGCCGCTTCAACATGGAGCTGTACAAGCTGTCG GGCAGAAAGAGCGGCGGTGTCTGCCTCAACTGCCGGCACAACACGGCCGGGCGGCACTGCCACTACTGCAAGGAAGGCT TCTACCGCGACCTCAGCAAACCCATCTCCCACCGCAAGGCCTGCAAAGAGTGCGATTGCCATCCCGTGGGCGCCGCCGG CCAAACCTGCAACCAAACCACGGGGCAGTGTCCATGCAAGGACGGCGTCACCGGCATCACCTGCAACCGCTGCGCCAAG GGCTACCAGCAGAGCCGCTCGCCCATTGCCCCCTGCATAAAGATCCCCGCCGCGCCGCCCCCCACAGCTGCCAGCAGCA CGGAGGAGCCTGCAGACTGTGACTCGTACTGCAAAGCCTCCAAGGGGAAGCTGAAGATCAACATGAAGAAGTACTGCAA GAAGGACTACGCTGTGCAGATCCACATCCTGAAAGCGGAAAAAAATGCCGACTGGTGGAAGTTCACCGTCAACATCATC TCTGTCTACAAACAGGGCAGCAACCGGCTGCGGCGCGGGGACCAGACCCTGTGGGTGCACGCCAAGGACATCGCCTGCA AGTGCCCCAAGGTGAAGCCCATGAAGAAGTACCTCCTGCTGGGCAGCACCGAGGACTCTCCCGACCAGAGCGGCATCAT CGCGGACAAGAGCAGCCTGGTGATCCAATGGCGGGACACGTGGGCACGGCGGCTGCGGAAGTTCCAGCAGAGGGAGAAG AAGGGGAAGTGTAGGAAGGCGTAGGGAGGAGCGGTGATGGACTGAGCGCTGCCGGGTGCGGGCGGGGGGTGGGCGCAGG GGGCTCACGGCATCTCGTATTGAGGGATGGAAGGGGAAAAAAAACACGAAACC
Citation Wilson LJ, Wingate RJ (2006). Temporal identity transition in the avian cerebellar rhombic lip.
Dev Biol. 2006 Sep 15;297(2):508-21. Epub 2006 May 26. Copyright Copyright © 2006 Elsevier Inc. All rights reserved. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc #NM_205419).
Entry 3 GEISHA Id Netrin1.Riley.2010 Data Source Publication Complete cDNA Template Probe show GGCACGAGGGACCCAGCCCCGCCGCCAGCCGACTTTTGTGGGGCCGTCGCCTCTCCGCTCTCCCTTTCTCCGCGGGGTT TGGCCGCGGGGCGGGCGATGCTCCGCGCTCCGTGAGCCGCGCACCGCACCGCCTCCGCCGGCCGAGCGCCCCGCTCAGA GCCCCGCTGCGCCGCGCACGATGCCGCGGAGGGGCGCGGAGGGGCCGCTCGCCCTGCTGCTGGCGGCCGCGTGGCTGGC ACAGCCGCTGCGAGGCGGCTACCCCGGGCTGAACATGTTCGCCGTGCAGACGGCGCAGCCCGACCCCTGCTACGACGAG CACGGGCTGCCCCGCCGCTGCATCCCGGACTTCGTCAACTCGGCCTTCGGCAAGGAGGTGAAGGTGTCGAGCACCTGCG GGAAGCCGCCGTCGAGGTACTGCGTGGTGACGGAGAAGGGCGAGGAGCAGGTCCGCTCGTGCCACCTCTGCAACGCCTC CGACCCCAAGCGCGCCCACCCGCCCTCCTTCCTCACCGACCTCAACAACCCGCACAACCTGACGTGCTGGCAGTCCGAC AGCTACGTGCAGTACCCGCACAACGTCACCCTCACGCTGTCCCTCGGCAAGAAGTTCGAGGTGACCTACGTGAGCCTGC AGTTCTGCTCGCCGCGCCCCGAGTCCATGGCCATCTACAAGTCCATGGACTACGGCAAGACGTGGGTGCCCTTCCAGTT CTACTCCACGCAGTGCCGCAAGATGTACAACAAGCCGAGCCGCGCCGCCATCACCAAGCAGAACGAGCAGGAGGCCATC TGCACCGACTCGCACACCGACGTGCGGCCCCTCTCCGGCGGCCTCATCGCCTTCAGCACCCTGGACGGCCGCCCCACCG CCCACGACTTCGACAACTCGCCCGTGCTGCAGGACTGGGTGACGGCCACCGACATCAAGGTGACCTTCAGCCGCCTGCA CACCTTCGGCGACGAGAACGAGGACGACTCCGAGCTCGCCCGCGACTCCTACTTCTACGCCGTGTCCGACCTGCAGGTC GGCGGGCGCTGCAAGTGCAACGGGCACGCGTCCCGCTGCGTCCGCGACCGCGACGACAACCTGGTGTGCGACTGCAAGC ACAACACGGCCGGGCCCGAGTGCGACCGCTGCAAACCCTTCCACTACGACCGGCCCTGGCAGAGGGCGACCGCCCGAGA GGCCAACGAGTGCGTGGCCTGCAACTGCAACCTGCATGCACGGCGCTGCCGCTTCAACATGGAGCTGTACAAGCTGTCG GGCAGAAAGAGCGGCGGTGTCTGCCTCAACTGCCGGCACAACACGGCCGGGCGGCACTGCCACTACTGCAAGGAAGGCT TCTACCGCGACCTCAGCAAACCCATCTCCCACCGCAAGGCCTGCAAAGAGTGCGATTGCCATCCCGTGGGCGCCGCCGG CCAAACCTGCAACCAAACCACGGGGCAGTGTCCATGCAAGGACGGCGTCACCGGCATCACCTGCAACCGCTGCGCCAAG GGCTACCAGCAGAGCCGCTCGCCCATTGCCCCCTGCATAAAGATCCCCGCCGCGCCGCCCCCCACAGCTGCCAGCAGCA CGGAGGAGCCTGCAGACTGTGACTCGTACTGCAAAGCCTCCAAGGGGAAGCTGAAGATCAACATGAAGAAGTACTGCAA GAAGGACTACGCTGTGCAGATCCACATCCTGAAAGCGGAAAAAAATGCCGACTGGTGGAAGTTCACCGTCAACATCATC TCTGTCTACAAACAGGGCAGCAACCGGCTGCGGCGCGGGGACCAGACCCTGTGGGTGCACGCCAAGGACATCGCCTGCA AGTGCCCCAAGGTGAAGCCCATGAAGAAGTACCTCCTGCTGGGCAGCACCGAGGACTCTCCCGACCAGAGCGGCATCAT CGCGGACAAGAGCAGCCTGGTGATCCAATGGCGGGACACGTGGGCACGGCGGCTGCGGAAGTTCCAGCAGAGGGAGAAG AAGGGGAAGTGTAGGAAGGCGTAGGGAGGAGCGGTGATGGACTGAGCGCTGCCGGGTGCGGGCGGGGGGTGGGCGCAGG GGGCTCACGGCATCTCGTATTGAGGGATGGAAGGGGAAAAAAAACACGAAACC
Citation Riley KL, Gledhill S, Schubert FR. Early expression of axon guidance molecules in the embryonic chick mesencephalon and pretectum. Int J Dev Biol. 2010;54(4):743-53. Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_205419).
Entry 4 GEISHA Id NETRIN1.Abraira.2010 Data Source Publication Complete cDNA Template Probe show GGCACGAGGGACCCAGCCCCGCCGCCAGCCGACTTTTGTGGGGCCGTCGCCTCTCCGCTCTCCCTTTCTCCGCGGGGTT TGGCCGCGGGGCGGGCGATGCTCCGCGCTCCGTGAGCCGCGCACCGCACCGCCTCCGCCGGCCGAGCGCCCCGCTCAGA GCCCCGCTGCGCCGCGCACGATGCCGCGGAGGGGCGCGGAGGGGCCGCTCGCCCTGCTGCTGGCGGCCGCGTGGCTGGC ACAGCCGCTGCGAGGCGGCTACCCCGGGCTGAACATGTTCGCCGTGCAGACGGCGCAGCCCGACCCCTGCTACGACGAG CACGGGCTGCCCCGCCGCTGCATCCCGGACTTCGTCAACTCGGCCTTCGGCAAGGAGGTGAAGGTGTCGAGCACCTGCG GGAAGCCGCCGTCGAGGTACTGCGTGGTGACGGAGAAGGGCGAGGAGCAGGTCCGCTCGTGCCACCTCTGCAACGCCTC CGACCCCAAGCGCGCCCACCCGCCCTCCTTCCTCACCGACCTCAACAACCCGCACAACCTGACGTGCTGGCAGTCCGAC AGCTACGTGCAGTACCCGCACAACGTCACCCTCACGCTGTCCCTCGGCAAGAAGTTCGAGGTGACCTACGTGAGCCTGC AGTTCTGCTCGCCGCGCCCCGAGTCCATGGCCATCTACAAGTCCATGGACTACGGCAAGACGTGGGTGCCCTTCCAGTT CTACTCCACGCAGTGCCGCAAGATGTACAACAAGCCGAGCCGCGCCGCCATCACCAAGCAGAACGAGCAGGAGGCCATC TGCACCGACTCGCACACCGACGTGCGGCCCCTCTCCGGCGGCCTCATCGCCTTCAGCACCCTGGACGGCCGCCCCACCG CCCACGACTTCGACAACTCGCCCGTGCTGCAGGACTGGGTGACGGCCACCGACATCAAGGTGACCTTCAGCCGCCTGCA CACCTTCGGCGACGAGAACGAGGACGACTCCGAGCTCGCCCGCGACTCCTACTTCTACGCCGTGTCCGACCTGCAGGTC GGCGGGCGCTGCAAGTGCAACGGGCACGCGTCCCGCTGCGTCCGCGACCGCGACGACAACCTGGTGTGCGACTGCAAGC ACAACACGGCCGGGCCCGAGTGCGACCGCTGCAAACCCTTCCACTACGACCGGCCCTGGCAGAGGGCGACCGCCCGAGA GGCCAACGAGTGCGTGGCCTGCAACTGCAACCTGCATGCACGGCGCTGCCGCTTCAACATGGAGCTGTACAAGCTGTCG GGCAGAAAGAGCGGCGGTGTCTGCCTCAACTGCCGGCACAACACGGCCGGGCGGCACTGCCACTACTGCAAGGAAGGCT TCTACCGCGACCTCAGCAAACCCATCTCCCACCGCAAGGCCTGCAAAGAGTGCGATTGCCATCCCGTGGGCGCCGCCGG CCAAACCTGCAACCAAACCACGGGGCAGTGTCCATGCAAGGACGGCGTCACCGGCATCACCTGCAACCGCTGCGCCAAG GGCTACCAGCAGAGCCGCTCGCCCATTGCCCCCTGCATAAAGATCCCCGCCGCGCCGCCCCCCACAGCTGCCAGCAGCA CGGAGGAGCCTGCAGACTGTGACTCGTACTGCAAAGCCTCCAAGGGGAAGCTGAAGATCAACATGAAGAAGTACTGCAA GAAGGACTACGCTGTGCAGATCCACATCCTGAAAGCGGAAAAAAATGCCGACTGGTGGAAGTTCACCGTCAACATCATC TCTGTCTACAAACAGGGCAGCAACCGGCTGCGGCGCGGGGACCAGACCCTGTGGGTGCACGCCAAGGACATCGCCTGCA AGTGCCCCAAGGTGAAGCCCATGAAGAAGTACCTCCTGCTGGGCAGCACCGAGGACTCTCCCGACCAGAGCGGCATCAT CGCGGACAAGAGCAGCCTGGTGATCCAATGGCGGGACACGTGGGCACGGCGGCTGCGGAAGTTCCAGCAGAGGGAGAAG AAGGGGAAGTGTAGGAAGGCGTAGGGAGGAGCGGTGATGGACTGAGCGCTGCCGGGTGCGGGCGGGGGGTGGGCGCAGG GGGCTCACGGCATCTCGTATTGAGGGATGGAAGGGGAAAAAAAACACGAAACC
Citation Abraira VE, Satoh T, Fekete DM, Goodrich LV. Vertebrate Lrig3-ErbB interactions occur in vitro but are unlikely to play a role in Lrig3-dependent inner ear morphogenesis. Dev Biol. 2010 Apr 15;340(2):595-604. Epub 2010 Feb 18. Copyright Copyright Abraira et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_205419.1 ).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 25-29 stage 27
stage 27
stage 29
stage 29
Ear/Otic Placode
Entry 5 GEISHA Id NETRIN1.Murakami.2010 Data Source Publication Complete cDNA Template Probe show ACGAGAACGAGGACGACTCCGAGCTCGCCCGCGACTCCTACTTCTACGCCGTGTCCGACCTGCAGGTCGGCGGGCGCTG CAAGTGCAACGGGCACGCGTCCCGCTGCGTCCGCGACCGCGACGACAACCTGGTGTGCGACTGCAAGCACAACACGGCC GGGCCCGAGTGCGACCGCTGCAAACCCTTCCACTACGACCGGCCCTGGCAGAGGGCGACCGCCCGAGAGGCCAACGAGT GCGTGGCCTGCAACTGCAACCTGCATGCACGGCGCTGCCGCTTCAACATGGAGCTGTACAAGCTGTCGGGCAGAAAGAG CGGCGGTGTCTGCCTCAACTGCCGGCACAACACGGCCGGGCGGCACTGCCACTACTGCAAGGAAGGCTTCTACCGCGAC CTCAGCAAACCCATCTCCCACCGCAAGGCCTGCAAAGAGTGCGATTGCCATCCCGTGGGCGCCGCCGGCCAAACCTGCA ACCAAACCACGGGGCAGTGTCCATGCAAGGACGGCGTCACCGGCATCACCTGCAACCGCTGCGCCAAGGGCTACCAGCA GAGCCGCTCGCCCATTGCCCCCTGCATAAAGATCCCCGCCGCGCCGCCCCCCACAGCTGCCAGCAGCACGGAGGAGCCT GCAGACTGTGACTCGTACTGCAAAGCCTCCAAGGGGAAGCTGAAGATCAACATGAAGAAGTACTGCAAGAAGGACTACG CTGTGCAGATCCACATCCTGAAAGCGGAAAAAAATGCCGACTGGTGGAAGTTCACCGT
Citation Murakami S, Ohki-Hamazaki H, Watanabe K, Ikenaka K, Ono K., Netrin 1 provides a chemoattractive cue for the ventral migration of GnRH neurons in the chick forebrain. J Comp Neurol. 2010 Jun 1;518(11):2019-34. Copyright Copyright © 2010 Wiley-Liss, Inc. Comments Authors indicated probe was GenBank access. no. L34549, nt959-1728
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 31-32 stage 32
stage 32
stage 32
stage 32
stage 32
Telencephalon
Entry 6 GEISHA Id NTN1.Hardy.2019 Data Source GEISHA ISH Analysis Complete cDNA Template Probe show CTGCAAGGAAGGCTTCTACCGCGACCTCAGCAAACCCATCTCCCACCGCAAGGCCTGCAAAGAGTGCGATTGCCATCCC GTGGGCGCCGCCGGCCAAACCTGCAACCAAACCACGGGGCAGTGTCCATGCAAGGACGGCGTCACCGGCATCACCTGCA ACCGCTGCGCCAAGGGCTACCAGCAGAGCCGCTCGCCCATTGCCCCCTGCATAAAGATCCCCGCCGCGCCGCCCCCCAC AGCTGCCAGCAGCACGGAGGAGCCTGCAGACTGTGACTCGTACTGCAAAGCCTCCAAGGGGAAGCTGAAGATCAACATG AAGAAGTACTGCAAGAAGGACTACGCTGTGCAGATCCACATCCTGAAAGCGGAAAAAAATGCCGACTGGTGGAAGTTCA CCGTCAACATCATCTCTGTCTACAAACAGGGCAGCAACCGGCTGCGGCGCGGGGACCAGACCCTGTGGGTGCACGCCAA GGACATCGCCTGCAAGTGCCCCAAGGTGAAGCCCATGAAGAAGTACCTCCTGCTGGGCAGCACCGAGGACTCTCCCGAC CAGAGCGGCATCATCGCGGACAAGAGCAGCCTGGTG
Citation Holly Hardy, James Gd Prendergast, Aara Patel, Sunit Dutta, Violeta Trejo-Reveles, Hannah Kroeger, Andrea R Yung, Lisa V Goodrich, Brian Brooks, Jane C Sowden, Joe Rainger. Detailed analysis of chick optic fissure closure reveals Netrin-1 as an essential mediator of epithelial fusion. Elife. 2019 Jun 4;8:e43877. DOI: 10.7554/eLife.43877. Copyright Copyright © 2019, Hardy et al. Comments Authors indicated that the probe was amplified by PCR using the following primers: 5’-ATTAACCCTCACTAAAGGCTGCAAGGAGGGCTTCTACC-3’ and 5’-TAATACGACTCACTATAGGCACCAGGCTGCTCTTGTCC-3’. The probe sequence above was extracted from NCBI (accession number NM_205419.1).
Mouse Frog Fruit Fly Zebra Finch Zebrafish