GEISHA 2.0

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 5

stage 6

Head Process

7-12

stage 10

Head Process

13-16

stage 13

stage 16

Head Process

Probe 2

GEISHA Id Chordin.Bertocchini.2008

NCBI Ensembl

Gene Name CHRD

Aliases CHRD, chordin, Official

Gene Description chordin

NCBI Nucleotide Hit

Ensembl Genome Map contig view

Citation Federica Bertocchini, Claudio D Stern (2008). A differential screen for genes expressed in the extraembryonic endodermal layer of pre-primitive streak stage chick embryos reveals expression of Apolipoprotein A1 in hypoblast, endoblast and endoderm. Gene Expression Patterns, Volume 8, Issues 7-8, September 2008, Pages 477-480, ISSN 1567-133X, DOI: 10.1016/j.gep.2008.07.001.

Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204980).

Complete Sequence

ATGCGCACCGCCCTGCTGCTGCTCGCCCTACTCGCCCTGCCCGTCCGCACCACCCGCCCCAAGCTCGCCCTGCCCATCC GGCCCAACAGCGAGCCGCTGCCCCCCGGGGGGGCGACAGGTTGTGCCTTCGGGGGACGTTTCTACGCGCTGGAGGAGAC GTGGCACCCCGACCTGGGGGAGCCCTTTGGGGTGATGCGCTGCGTGATCTGCCACTGCGAGACGCAGAGGAATCGCCGA GGGAAACCAGTGGGGAAAGTGAACTGCAAGAACATGAAGCAGGATTGCCCCGTTCCCACTTGCCCCCGTGCCACGCTGT TGCCCGGGCACTGCTGCCATACCTGTCCCAAAGCCTTGCCAGGAGCCCCGGAGAAGAGCTACAAGCCACCTTTTGACAC CTTTGAGTACTTCCAGGACAAGGAGGACGAGCTGGACAAGCCGTACAATGACCGCTCCTACCTCAGCTCTGAGGGTTCG GCACGTGACGATGCCCGCACAGAATTCGTGGCCCTGCTGACGAGCGGCCCCGAGCCGTGGCACCCCACATCCAGCGCGG TGGCCAAGGCTCGCTTCACCCTGCTGCGCTCCTACCTGCTCTTCTCCATCAGCTACGAGCGGCTGGGCCGGCCGAGCCG TGTGCGTTTCAGTGACCCCGAGGGCACCGTGCTGTTCGAGCACCCAGTGCAGAAGAGCGCAGCCCCTGAGGATGGCATG CTCTGTGGGATGTGGAGGACAGTGTCCAAAGCCAACATACAGCTGCTGCGTGCGGACGAGCTCCGTGTGTCCCTCGTCA CCCGTGCGCAGCCCTCCGGAGAGGTGCATGGGCACATCCTGAAGCACCGGGCGCTCTTTGCAGAGACATTTGGTGCCAT CCTGACCTCATCAGACCCCGTACACCTGGGGGCTGGGGGCATGGCCATGCTGACGCTGAGCGACACCGAGAACAACCTA CACTTCATCCTCATGGCCCGTGGACTGCTGGAGCCGGGTGCTGAGGAGTCCCCCTGGGTACCGCTGCGGGTCCGCATCC TGCACCAGGGCCAGACGCTGCGCGAGGCCCATGCCAACATCACTATGGAGGACCCCGACTTCGCGGAGGTACTGAGCGA CCTGTCTGCCCATGAGCTGCAGTGGTTGGCACAGGGGCAGCTCCGCATCGTGGCTGACACCCAGGGCCGGCACCCGCGC CAGCTGGAGGGCACCATTACCGCCCGCCGCAGCTGTGACACCATCCAAAGCGTGCTGTGCGGCGCAGATGCATTGCAGC CCACCAAGACGGGGGCGGTGGGCTCGGCCAAGCTGGCGCTGCATGAGAACGGCACGCTGGAGTACCAGGTGCGGGTGGT GGGCACGGCCAGCGAGGTGGTGGGGGTCACACTGGAGACCAAACCGCGGCGGAAGAACAGGAGGAACGTCCTCTTCGAC ATGACACCCAGCTATAGGGCTGGATGGCTCAAGGAGTGTGGCACAGCCCAGCGCCGCGATGTGCACATGCTGCTGCAGA ATGAGCTCTTCCTCAACGTGGCCACCAAGGACTGGGCAGAGGGAGAGCTGCGGGGCCAGGTCATCTCCCTGCCCTACAG TGGGCTCCTGGCACGCTACACAGAGATGCCGGTGCCGCTGGCAGGGCAGCTGGTATCCCCCCCAGTGAGCAGCGGGGCC GGGGGCCACGCGTGGCTGTCACTGGATGAGCACTGCCACCTGCACTACGAGATAGTGGTGGCGGGTCTGGGCCGCCCGG CCGATGGCACAGTCAGTGCCCAGCTGCACGGCGTGGCCGAGCTGGGCGAGATGGGCACTCGGCCGCACCTGCACAAGCG GATGCTCAAGGGGTTCTATGGCACTGAGGCTCAGGGGGTGGTGAAGGACCTGGATGCTGAGCTGCTGCAGCACCTGGCA CAGGGCACCGCATTCCTGCAAGTCAGCACCAAAGCACACCCGCGTGGGGAGATGCGGGGATGGGTGCACATCCCCAACC GCTGTCAGCCAGGAGGGGCCCGCCTGTCCACCGGGGAGGCTGAGCTCTCAGAGGGCCCTAAGGGCAGGAATGTGGAACA GCTGAAAAAGGACCCCAACTCCTGCTTCTTCGAGGGGCAGCACCATGCACACGGCACCCGCTGGGCGCCTGACTACGAC AAGAAGTGCTCCATCTGCAGCTGCCAGAAGCGCACGGTCATCTGCGATCCCATCCTGTGCCAGCCCCTCAACTGTACCC GCCAGGTGCACCCTGAGGAGCTGTGCTGCCCCATCTGTGAAGAGAAGAAGATGGAGCAGGAGGAGCTGAAGCTGGAACG GGCACGGGACACGAGCGAGGGCTGCTACTTTGATGGGGACAAGACATGGCGAGGCTCTGGCACCCGCTGGCACCCTGTC GTGCCGCCGTTTGGCCTCATCAAATGTGCCATCTGCACCTGCAAGGGCACCACGGGTGAAGTGCACTGCGAGAAGGTGC AGTGTCGTCTCACCTGTGCCAACCCTGTGCGCGTCAGCCCCTCCGACTGCTGCAAGCAGTGCCCAGCCCCTGAGAAGAG CATCCCTGAGCTGACTGATGGCATGCAGGCGGACGGACCCCGTGCGTGCCGCTTTGGGCGCCGCTGGTACCTCAACAAC GAGAGCTGGCACCCCTCAGTGCCACCCTTTGGGGAGATGAAGTGCATCCTGTGCTGGTGTGTGTCAGGAGAGACCCACT GCCAGCGCCAGGAGTGCCCGCCAGATGCCTGTGCCAGCCCCACCAGGAGGGACAACCCCTGCTGTGCCAAGTGTCGCGC TCCGGATGCACCCTCAGAAAAGATGTACGAAGCCACAGCAGAGGCATGGAGCCGCTGAGCAGTGAGCGCAGCTTGAGAG CGCAGTGATACTGGGAGGCCCTACAGAGCCCCATCGCCCCCCCAGGCTGGGCACGGGGCACAGAGGAGCAGGGATGGGG AAGGCACCCCCTCTGGGCACAGCCACAGTGCCGAGCCACCCTAGAAGCCAGCAGCAGGGCTGGGGGAGCCGGGGCACCC CGCACTCCCACCCACGAGCTCCCGGCTGGTGGGTGCAGCAGGCATCGTGCCCGCCTTGTACATAGTGTAAATCCCTCTC ACCCCCGTCTCGCTGTGCACGCCAGCTCAGCTGGGCTTGGTGTGTAATTTATAGGGACGGGGGTCCCGATGTATTTATT AAAGACAGAGATATTGCCCATTAAAAAAAAA

Stage

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Location (click to highlight)

Comments (click to highlight)

1-3

stage 2

stage 3

4-5

stage 4

stage 5

Probe 3

GEISHA Id Chordin.Chapman.2002

NCBI Ensembl

Gene Name CHRD

Aliases CHRD, chordin, Official

Gene Description chordin

NCBI Nucleotide Hit

Ensembl Genome Map contig view

Citation Chapman SC, Schubert FR, Schoenwolf GC, Lumsden A. Analysis of spatial and temporal gene expression patterns in blastula and gastrula stage chick embryos. Dev Biol. 2002 May 1;245(1):187-99.

Comments Chordin gene not identified on the present genome build. It is presently located within an unassembled contig (Ch.Un_random)

Complete Sequence

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

1-3

stage 3

4-5

stage 4

stage 5

Probe 4

GEISHA Id Chordin.Mikawa.2004

NCBI Ensembl

Gene Name CHRD

Aliases CHRD, chordin, Official

Gene Description chordin

NCBI Nucleotide Hit

Ensembl Genome Map contig view

Citation Mikawa, T, Poh, A, Kelly, K, Ishii, Y, Reese, D. Induction and Patterning of the Primitive Streak, an Organizing Center of Gastrulation in the Amniote. Dev Dyn. 2004 Mar;229(3):422-32.

Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204980).

Complete Sequence

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

1-3

stage 1

stage 2

stage 3

rostral

4-6

stage 4

stage 5

stage 6

stage 7

Probe 5

GEISHA Id Chordin.Streit.1998

NCBI Ensembl

Gene Name CHRD

Aliases CHRD, chordin, Official

Gene Description chordin

NCBI Nucleotide Hit

AF031230 show details

Ensembl Genome Map contig view

Citation Streit A, Lee KJ, Woo I, Roberts C, Jessell TM, Stern CD (1998). Chordin regulates primitive streak development and the stability of induced neural cells, but is not sufficient for neural induction in the chick embryo. Development. 1998 Feb;125(3):507-19.

Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (AF031230).

Complete Sequence

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

1-3

stage 1

stage 3

4-6

stage 6

7-8

stage 8

Probe 6

GEISHA Id Chordin.Streit.1999

NCBI Ensembl

Gene Name CHRD

Aliases CHRD, chordin, Official

Gene Description chordin

NCBI Nucleotide Hit