GEISHA - A Chicken Embryo Gene Expression Database
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CDX4
caudal type homeobox 4

Gene
Official SymbolCDX4
Official Full Namecaudal type homeobox 4
CGNC ID
also known asCDXB, CHOX-CAD2, ox-cad2, homeobox protein CHOX-CAD2|Homeobox protein CHOX-CAD2|caudal type homeo box transcription factor 4|caudal type homeobox transcription factor 4|caudal-type homeobox protein CDXB
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204614
PolypeptideNP_989945
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.49855
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human1046MIM:300025
Mouse12592ENSMUSG00000031326All phenotypic alleles (5):Targeted, knock-out(1) Targeted, other(4) MGI:88362
Xenopus395056, 380412482786
Zebrafish798281ENSDARG00000036292ZDB-GENE-980526-330ZFIN:ZDB-GENE-980526-330
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene395320
Ensembl GeneENSGALG00000007657
KEGGgga:395320

Entry 1

GEISHA IdChEST433k20Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
AAAGGGACATGAGGGCTAGCATGAGTCATTTATAGAGCCAGTCAGAGCTAGAAAAGAGAGAGAAAGAAAGAGGAGGGGA
AGAGATCAAACAAACACCGTGAGGAGCAGGATGCCCCAGCAAGACAAAGCCAGGCTGTGAGCATCATGTATGTGAGTTA
CCTTTTGGATAAAGAGACCAGCATGTATCCAGGACCTGCAAGGTGCAGCAACAACAACCTGCCAGTGCAGAACTTTGTG
CCTGCTCCCCCCTACTCAGACTACATGGGGTATCACCACGTGCCAGCTCCAGACAGCCACGGACAGCCCGCGGGAACCT
GGGGACCCCACTACGGCCCCCAGAGGGAGGACTGGAACGCTTACGGCCCGTGCCCAGGGCCCTCCGGCACGGCTGCTGC
CGCACAGCTCAGCGGCTCCTCTCCTGGGCAGGGCTCCTACAGTCCAGCTGAGTACAGCTCCCTCCATCCCGCTGCACCC
GGGGGGTTACCTCCTGCAGGCACCGTTGGCACACAGCAGGTCTCACCCACCAACCAAAGGCACAGCTCTTACGAATGGA
TGAGGAAAACGGTGCAATCCACTTCTACAGGTAAAACAAGAACAAGAGAGAAGTACCGAGTGGTTTACACAGATCATCA
GAGATTAGAATTAGAGAAGGAATTTCATTACAACAGATACATTACAATCAGGAGGAAGTCTGAACTTGCTGCAAACCTA
AGACTTTCCGAGAGACAGGTG
Commentspotenetially enough overlap in homology to also bind to paralog HMD2_CHICK (Homeobox protein CHOX-CAD2)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 5
stage 6
Early Mesoderm
Epiblast
Lateral Plate Mesoderm
Mesoderm, early
Paraxial Mesoderm
Primitive Streak
xs
7-12
stage 7
stage 8
stage 9
stage 10
stage 12
Lateral Plate Mesoderm
Neural Plate/Tube
Notochord
Primitive Streak
Spinal Cord
 
13-18
stage 13
stage 14
stage 17
stage 18
Extraembryonic
Lateral Plate Mesoderm
Paraxial Mesoderm
Primitive Streak
Spinal Cord
Tail
 
19-24
stage 20
stage 21
stage 22
stage 24
Amnion
Extraembryonic
Hindgut
Tail
 
25
stage 25
Hindgut
Tail
 

Entry 2

GEISHA IdCDX4.Alev.2010Data SourcePublication
Complete cDNA Template Probeshow
ACGAATGGATGAGGAAAACGGTGCCAACTAACACTACTGGTAAAACAAGAACAAAAGAGAAGTACCGGGTTGTTTACAC
AGACCATCAGAGACTAGAATTAGAGAAGGAATTTCACTGCAACAGATACATTACAATAAGGAGAAAGTCAGAACTTGCA
GCAAACCTTGGACTATCTGAAAGACAGGTAAAAATCTGGTTCCAGAATCGCCGAGCCAAAGAAAGAAAAATAATCAAGA
AGAAAATCTCTCAGTTTGATGGCAGCGGGGGCTCAGTTCAGAGTGACTCTGGTTCACTCAGCCCTAATGAAATAACAAG
TTCCCTGTTCCCACCACCACACGGAATAAATGTATTACAGTCTGCTGACATCCATCAGGTCATAGTTTCAGAATGAACA
GTGGGGGAAAAAGAAAAACAGAAAAAAAGAGTTGTATGGATTTTTTGTTTTTGTTTTTAACTCCCTCTATTGAAAACTC
AATTTTGCAAAGCACCATTCTTGTTTAACTACCTTCAGAGTACTTATTTCCACATAGAGGATCTGGAACTATTACCAAA
ATATTTCAATTAAAAAAATCTCAGGGAGTTCGTGCTGCTGCTAATACTCATCACTCAAAATCTTTTGAATAGAAGATAA
TTTACTTCAGATACCGAAGCAGAAAAAGATACTGCTGAAGATTCAAGCAAACCTAATTCTAGTCTGCTCATGTATACAA
AGAAAACTGTCAGTGAATTGATTATAGAGTAATACTGCATAAAATGTAAGATGCTGGATGTATTTAGTTTGTTACATTT
TATATAATTAAACAGTAGATTTTATAAATATTCACATTTAATGTGTACTGAAAATTAAGTCATTTTTTGAAAACAACTT
TTTAAACACTTAAACACTCAAGAGACATAACAATGTTACGCCTGGTGACACA
CitationAlev C, Wu Y, Kasukawa T, Jakt LM, Ueda HR, Sheng G. Transcriptomic landscape of the primitive streak. Development. 2010 Sep 1;137(17):2863-74. Epub 2010 Jul 28.
CopyrightPublished by The Company of Biologists 2010. This material is protected by a copyright retained by the authors. Permission granted by Dr. G Sheng.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4
stage 4
stage 4
Primitive Streak
 

Entry 3

GEISHA IdCDX4.Joshi.2019Data SourcePublication
Complete cDNA Template Probeshow
CATGTATGTGAGTTCTCTCTTGGATAAAGAGACCAGCATGTATCCAGGACCTGCAAGGTGCAGCAACAACAACCTGCCA
GTGCAGAACTTTGTGCCTGCTCCCCCCTACTCAGACTACATGGGGTATCACCACGTGCCAGCTCCAGACAGCCACGGAC
AGCCCGCGGGAGCCTGGGGACCCCACTACGGCCCCCAGAGGGAGGACTGGAACGCTTACGGCCCGTGCCCAGGGCCCTC
CGGCACGGCTGCTGCCGCACAGCTCAGCGGCTCCTCTCCTGGGCAGGGCTCCTACAGTCCAGCTGAGTACAGCTCCCTC
CATCCCGCTGCACCCGGGGGGTTACCTCCTGCAGGCACCGTTGGCACACAGCAGGTCTCACCCACCAACCAAAGGCACA
GCTCTTACGAATGGATGAGGAAAACGGTGCCAACTAACACTACTGGTAAAACAAGAACAAAAGAGAAGTACCGGGTTGT
TTACACAGACCATCAGAGACTAGAATTAGAGAAGGAATTTCACTGCAACAGATACATTACAATAAGGAGAAAGTCAGAA
CTTGCAGCAAACCTTGGACTATCTGAAAGACAGGTAAAAATCTGGTTCCAGAATCGCCGAGCCAAAGAAAGAAAAATAA
TCAAGAAGAAAATCTCTCAGTTTGATGGCAGCGGGGGCTCAGTTCAGAGTGACTCTGGTTCACTCAGCCCTAATGAAAT
AACAAGTTCCCTGTTCCCACCACCACACGGAATAAATGTATTACAGTCTGCTGACATCCATCAGGTCATAGTTTCAGAA
TGAACA
CitationPiyush Joshi, Andrew J Darr, Isaac Skromne. CDX4 regulates the progression of neural maturation in the spinal cord. Dev Biol. 2019 May 15;449(2):132-142. Epub 2019 Feb 28. DOI: 10.1016/j.ydbio.2019.02.014.
CopyrightCopyright © 2019 Elsevier Inc.
CommentsAuthors indicated that the probe was amplified by PCR using the following primers: 5'-ACATGTATGTGAGTTCTCTCTTGG-3' and 5'-TGATCATTCTGAAACTATGAC-3' and was extracted from NCBI accession number NM_204614.1
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-11
stage 11
stage 11
stage 11
stage 11
stage 11
stage 11
Lateral Plate Mesoderm
Neural Plate/Tube
Primitive Streak
 
all
 
  

Entry 4

GEISHA IdcdxB.Bel-Vialar.2002Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
AAAATCAAGCTACTATTTTTTAAGCAGCAAAAGAAAATACAGAAGAGCAAGATGTTGTGACAACATTTACAATCTGCAA
GCATCATGTATGTGAGTTCTCTCTTGGATAAAGAGACCAGCATGTATCCAGGACCTGCAAGGTGCAGCAACAACAACCT
GCCAGTGCAGAACTTTGTGCCTGCTCCCCCCTACTCAGACTACATGGGGTATCACCACGTGCCAGCTCCAGACAGCCAC
GGACAGCCCGCGGGAGCCTGGGGACCCCACTACGGCCCCCAGAGGGAGGACTGGAACGCTTACGGCCCGTGCCCAGGGC
CCTCCGGCACGGCTGCTGCCGCACAGCTCAGCGGCTCCTCTCCTGGGCAGGGCTCCTACAGTCCAGCTGAGTACAGCTC
CCTCCATCCCGCTGCACCCGGGGGGTTACCTCCTGCAGGCACCGTTGGCACACAGCAGGTCTCACCCACCAACCAAAGG
CACAGCTCTTACGAATGGATGAGGAAAACGGTGCCAACTAACACTACTGGTAAAACAAGAACAAAAGAGAAGTACCGGG
TTGTTTACACAGACCATCAGAGACTAGAATTAGAGAAGGAATTTCACTGCAACAGATACATTACAATAAGGAGAAAGTC
AGAACTTGCAGCAAACCTTGGACTATCTGAAAGACAGGTAAAAATCTGGTTCCAGAATCGCCGAGCCAAAGAAAGAAAA
ATAATCAAGAAGAAAATCTCTCAGTTTGATGGCAGCGGGGGCTCAGTTCAGAGTGACTCTGGTTCACTCAGCCCTAATG
AAATAACAAGTTCCCTGTTCCCACCACCACACGGAATAAATGTATTACAGTCTGCTGACATCCATCAGGTCATAGTTTC
AGAATGAACAGTGGGGGAAAAAGAAAAACAGAAAAAAAGAGTTGTATGGATTTTTTGTTTTTGTTTTTAACTCCCTCTA
TTGAAAACTCAATTTTGCAAAGCACCATTCTTGTTTAACTACCTTCAGAGTACTTATTTCCACATAGAGGATCTGGAAC
TATTACCAAAATATTTCAATTAAAAAAATCTCAGGGAGTTCGTGCTGCTGCTAATACTCATCACTCAAAATCTTTTGAA
TAGAAGATAATTTACTTCAGATACCGAAGCAGAAAAAGATACTGCTGAAGATTCAAGCAAACCTAATTCTAGTCTGCTC
ATGTATACAAAGAAAACTGTCAGTGAATTGATTATAGAGTAATACTGCATAAAATGTAAGATGCTGGATGTATTTAGTT
TGTTACATTTTATATAATTAAACAGTAGATTTTATAAATATTCACATTTAATGTGTACTGAAAATTAAGTCATTTTTTG
AAAACAACTTTTTAAACACTTAAACACTCAAGAGACATAACAATGTTACGCCTGGTGACACATTGCGTCCCATTAAATA
AAATGAATAGTCTTTGTATTCTAAAAAAAAA
CitationSophie Bel-Vialar, Nobue Itasaki, Robb Krumlauf. Initiating Hox gene expression: in the early chick neural tube differential sensitivity to FGF and RA signaling subdivides the HoxB genes in two distinct groups. Development 2002 Nov;129(22):5103-15.
CopyrightCopyright © The Company of Biologists Limited 2002.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence above was obtained from NCBI (accession number NM_204614.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-15
stage 15
Paraxial Mesoderm
Spinal Cord
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.49855

Mouse

EmageMGI:88362
EurexpressMGI:88362
MGI GXDMGI:88362

Frog

Xenbase482786

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-980526-330
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