GEISHA - A Chicken Embryo Gene Expression Database
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TCF21
transcription factor 21

Gene
Official SymbolTCF21
Official Full Nametranscription factor 21
CGNC ID10451
also known astranscription factor 21, Transcription factor 21, Podocyte-expressed 1, Pod-1, Epicardin, Capsulin
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Sequence Information
Genomic
RNANM_001277711
PolypeptideNP_001264640
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human6943ENSG00000118526MIM:603306
Mouse21412ENSMUSG00000045680All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(2) MGI:1202715
Xenopus100126209, 444386484804
Zebrafish558148ENSDARG00000036869ZDB-GENE-051113-88ZFIN:ZDB-GENE-051113-88
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene421697
Ensembl Gene
KEGGgga:421697

Entry 1

GEISHA IdChEST265h24Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
CGGGGTCCTCTCTGGATCTATATCACGCCTTAGTGCCGGAGGGGGGAGAGAAGGGGAGGAAAGTGCTGCGCCCCTTCTC
TCCTCCACCGCCACCACGTAGGTTTGGGGAGCTCCCCGTCCTCCCCTCCTCCCCCTTTCCCGCCAGCCCTTTGGCATCT
TCCAGACCATGTCCACTGGGTCCCTCAGTGATGTGGAAGATCTGCAAGAGGTGGAAATGCTGGAGTGCGATGGCCTGAA
AATGGATACTAACAAAGAGTTCGGGGCGTCCAACGAGAGCAACGAGGAGGGATCCAATGGCGAGAATGGCTCCCCTCAG
AAAGGGAGAGGGGCCTCGGGAAAGAGGAAAAAGGCTCCCCCCAAGAAGAGCCCTTTAAATGGTGTGAGCCAGGAAGGAA
AGCAGGTCCAGAGAAACGCTGCCAACGCAAGGGAGAGGGCAAGGATGAGGGTCCTTAGCAAAGCCTTCTCCAGGCTTAA
GACCACCCTGCCCTGGGTGCCCCCAGACACCAAGCTTTCCAAACTGGACACCTTGAGGCTGGCCTCCAGCTACATCGCA
CACCTGAGGCAAATCCTGGCCAACGACAAGTACGAAAATGGCTACATCCATCCAGTCAACCTGACCTGGCCTTTTATGG
TAGCCGGCAAACCCGAGAGTGACCTGAAAGAAGTGGTGAACACAAACCGCTTGTGCGGCCCGACGGCATCCTGAGCCCC
GCGGCCCCGCCAGCACCGACCCCGTGCGGCCGGGGAGGGGGCACGGGCGCGGGCAGGGCCCCGCTTTGCCCCGCTGCTG
CCCCGGGCCCGGGCAGGGCGACGGGAGAGCGCTCCGCCGGCACGGCACGGCGGAGACCGAAGGCAGAGACTCCACCCCG
GGAGAGCCCGACTCTATTTAACTTTATTGAGTGCGTGTGCAGTCGAGTGTCCTGCAACAGCAGCCTTGCTGGTTCAAGC
GCTACTAGAGGAAAGGCAGAGATCAAACAAAACCTACCACGCGTGTATCTTTTGTCTGAGACCTGTGGAATATGTAGAT
GCCTAGAAAAAAAAAAAAAAACTGACTTTGACAGTCATCTCTATGAACTCATTCGCCCTAAAGATATATAGATATATTT
TCTTCAAGCAGGTTTTTGCTCTATTTCTGTGAATAAACCTTCCTTTCCATTGAACACG
CommentsNo specific expression detected at stage 3.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 6
Early Mesoderm
Lateral Plate Mesoderm
Splanchnic Mesoderm
heart field
7-12
stage 11
Intermediate Mesoderm
 
13-18
stage 14
stage 15
stage 15
stage 16
Intermediate Mesoderm
Proepicardium
 
19-24
stage 19
stage 20
stage 21
stage 21
stage 23
stage 23
stage 24
Allantois
Amnion
Epicardium
Gonad
Gut
Head Mesenchyme
Outflow Tract
Proepicardium
Renal
Sinus Venosus
Splanchnic Mesoderm
hand transected

Entry 2

GEISHA IdCapsulin.Dastjerdi.2007Data SourcePublication
Complete cDNA Template Probeshow
CGATGGCCTGAAAATGGATACTAACAAAGAGTTCGGGGCGTCCAACGAGAGCAACGAGGAGGGATCCAATGGCGAGAAT
GGCTCCCCTCAGAAAGGGAGAGGGGCCTCGGGAAAGAGGAAAAAGGCTCCCCCCAAGAAGAGCCCTTTAAATGGTGTGA
GCCAGGAAGGAAAGCAGGTCCAGAGAAACGCTGCCAACGCAAGGGAGAGGGCAAGGATGAGGGTCCTTAGCAAAGCCTT
CTCCAGGCTTAAGACCACCCTGCCCTGGGTGCCCCCAGACACCAAGCTTTCCAAACTGGACACCTTGAGGCTGGCCTCC
AGCTACATCGCACACCTGAGGCAAATCCTGGCCAACGACAAGTACGAAAATGGCTACATCCATCCAGTCAACCTGACCT
GGCCTTTTATGGTAGCCGGCAAACCCGAGAGTGACCTGAAAGAAGTGGTGAACACAAACCGCTTGTGCGGCCCGACGGC
ATCCTGAGCCCCGCGG
CitationDastjerdi A, Robson L, Walker R, Hadley J, Zhang Z, Rodriguez-Niedenführ M, Ataliotis P, Baldini A, Scambler P, Francis-West P. Tbx1 regulation of myogenic differentiation in the limb and cranial mesoderm. Dev Dyn. 2007 Feb;236(2):353-63.
CopyrightCopyright © 2007 Wiley-Liss, Inc.
CommentsAccording to the authors, "A 550-bp capsulin fragment was PCRed using 5CGA TGC CCT GAA AAT GGA TAC TAA 3', and 5' CCG CGG GGC TCA GGA TGC 3' primers."
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 11
stage 11
stage 11
stage 12
Intermediate Mesoderm
Pharyngeal Arches and Clefts
 

Entry 3

GEISHA IdCapsulin.Ishii.2007Data SourcePublication
Complete cDNA Template Probeshow
GGGTCCTCTCTGGATCTATATCACGCCTTAGTGCCGGAGGGGGGAGAGAAGGGGAGGAAAGTGCTGCGCCCCTTCTCTC
CTCCACCGCCACCACGTAGGTTTGGGGAGCTCCCCGTCCTCCCCTCCTCCCCCTTTCCCGCCAGCCCTTTGGCATCTTC
CAGACCATGTCCACTGGGTCCCTCAGTGATGTGGAAGATCTGCAAGAGGTGGAAATGCTGGAGTGCGATGGCCTGAAAA
TGGATACTAACAAAGAGTTCGGGGCGTCCAACGAGAGCAACGAGGAGGGATCCAATGGCGAGAATGGC
CitationIshii Y, Langberg JD, Hurtado R, Lee S, Mikawa T. Induction of proepicardial marker gene expression by the liver bud. Development. 2007 Oct;134(20):3627-37. Epub 2007 Sep 12.
CopyrightPublished by The Company of Biologists 2007. This material is protected by a copyright retained by the authors. Permission granted by T. Mikawa.
CommentsSequence below was obtained from NCBI (BX932800) using the primers given in the publication: chick/quail capsulin (c/qcapsulin) forward primer, 5'-GGGTCCTCTCTGGATCTATATCAC-3' and reverse primer, 5'-GCCATTCTCGCCATTGGAT-3'.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-16
stage 14
stage 16
stage 16
stage 16
Intermediate Mesoderm
Proepicardium
 

Entry 4

GEISHA IdCapsulin.vonScheven.2006Data SourcePublication
Complete cDNA Template Probeshow
AGAGAAGGGGAGGAAAGTGCTGCGCCCCTTCTCTCCTCCACCGCCACCACGTAGGTTTGGGGAGCTCCCCGTCCTCCCC
TCCTCCCCCTTTCCCGCCAGCCCTTTGGCATCTTCCAGACCATGTCCACTGGGTCCCTCAGTGATGTGGAAGATCTGCA
AGAGGTGGAAATGCTGGAGTGCGATGGCCTGAAAATGGATACTAACAAAGAGTTCGGGGCGTCCAACGAGAGCAACGAG
GAGGGATCCAATGGCGAGAATGGCTCCCCTCAGAAAGGGAGAGGGGCCTCGGGAAAGAGGAAAAAGGCTCCCCCCAAGA
AGAGCCCTTTAAATGGTGTGAGCCAGGAAGGAAAGCAGGTCCAGAGAAACGCTGCCAACGCAAGGGAGAGGGCAAGGAT
GAGGGTCCTTAGCAAAGCCTTCTCCAGGCTTAAGACCACCCTGCCCTGGGTGCCCCCAGACACCAAGCTTTCCAAACTG
GACACCTTGAGGCTGGCCTCCAGCTACATCGCACACCTGAGGCAAATCCTGGCCAACGACAAGTACGAAAATGGCTACA
TCCATCCAGTCAACCTGACCTGGCCTTTTATGGTAGCCGGCAAAC
Citationvon Scheven G, Bothe I, Ahmed MU, Alvares LE, Dietrich S (2006). Protein and genomic organisation of vertebrate MyoR and Capsulin genes and their expression during avian development. Gene Expr Patterns. Apr;6(4):383-93. Epub 2006 Jan 18.
CopyrightCopyright © 2005 Elsevier B.V. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # XM_419734).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10
stage 10
stage 12
stage 12
stage 12
stage 12
Allantois
Anterior Intestinal Portal
Aorta
Foregut
Heart
Intermediate Mesoderm
Lateral Plate Mesoderm
Pharyngeal Arches and Clefts
Somatic Mesoderm
Somatopleure
Splanchnic Mesoderm
Coelom
13-18
stage 16
stage 16
stage 16
stage 16
stage 18
stage 18
Allantois
Anterior Intestinal Portal
Epicardium
Esophagus
Heart
Lateral Plate Mesoderm
Lung
Nephric Tubules
Pharyngeal Arches and Clefts
Proepicardium
Splanchnic Mesoderm
Tracheae
19-22
stage 20
stage 20
stage 20
stage 21
stage 22
stage 22
Allantois
Epicardium
Gut
Lung
Myocardium
Nephric Tubules
Pharyngeal Arches and Clefts
Proepicardium
Sinus Venosus
Splanchnic Mesoderm
Tail
 

Entry 5

GEISHA IdPOD1.Braitsch.2012Data SourcePublication
Complete cDNA Template Probeshow
TTTGGCATCTTCCAGACCATGTCCACTGGGTCCCTCAGTGATGTGGAAGATCTGCAAGAGGTGGAAATGCTGGAGTGCG
ATGGCCTGAAAATGGATACTAACAAAGAGTTCGGGGCGTCCAACGAGAGCAACGAGGAGGGATCCAATGGCGAGAATGG
CTCCCCTCAGAAAGGGAGAGGGGCCTCGGGAAAGAGGAAAAAGGCTCCCCCCAAGAAGAGCCCTTTAAATGGTGTGAGC
CAGGAAGGAAAGCAGGTCCAGAGAAACGCTGCCAACGCAAGGGAGAGGGCAAGGATGAGGGTCCTTAGCAAAGCCTTCT
CCAGGCTTAAGACCACCCTGCCCTGGGTGCCCCCAGACACCAAGCTTTCCAAACTGGACACCTTGAGGCTGGCCTCCAG
CTACATCGCACACCTGAGGCAAATCCTGGCCAACGACAAGTACGAAAATGGCTACATCCATCCAGTCAACCTGACCTGG
CCTTTTATGGTAGCCGGCAAACCCGAGAGTGACCTGAA
CitationBraitsch CM, Combs MD, Quaggin SE, Yutzey KE. Pod1/Tcf21 is regulated by retinoic acid signaling and inhibits differentiation of epicardium-derived cells into smooth muscle in the developing heart. Dev Biol. 2012 Aug 15;368(2):345-57.
CopyrightCopyright © 2012 Elsevier Inc.
CommentsThe cDNA template used to generate the probe was obtained by PCR as described in the paper.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31
stage 31
stage 31
Epicardium
EPDCs, Epicardium-derived cells(arrow heads)

Entry 6

GEISHA IdTCF21.Anderson.2020Data SourceDirect Submission
Complete cDNA Template Probeshow
AGAGAAGGGGAGGAAAGTGCTGCGCCCCTTCTCTCCTCCACCGCCACCACGTAGGTTTGGGGAGCTCCCCGTCCTCCCC
TCCTCCCCCTTTCCCGCCAGCCCTTTGGCATCTTCCAGACCATGTCCACTGGGTCCCTCAGTGATGTGGAAGATCTGCA
AGAGGTGGAAATGCTGGAGTGCGATGGCCTGAAAATGGATACTAACAAAGAGTTCGGGGCGTCCAACGAGAGCAACGAG
GAGGGATCCAATGGCGAGAATGGCTCCCCTCAGAAAGGGAGAGGGGCCTCGGGAAAGAGGAAAAAGGCTCCCCCCAAGA
AGAGCCCTTTAAATGGTGTGAGCCAGGAAGGAAAGCAGGTCCAGAGAAACGCTGCCAACGCAAGGGAGAGGGCAAGGAT
GAGGGTCCTTAGCAAAGCCTTCTCCAGGCTTAAGACCACCCTGCCCTGGGTGCCCCCAGACACCAAGCTTTCCAAACTG
GACACCTTGAGGCTGGCCTCCAGCTACATCGCACACCTGAGGCAAATCCTGGCCAACGACAAGTACGAAAATGGCTACA
TCCATCCAGTCAACCTGACCTGGCCTTTTATGGTAGCCGGCAAACTCTAGAG
CommentsImages and probe sequence provided by Claire Anderson.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 11
stage 11
stage 11
stage 11
stage 11
stage 12
Head Mesenchyme
Intermediate Mesoderm
Lateral Plate Mesoderm
Outflow Tract
Proepicardium
Sinus Venosus
Somatic Mesoderm
Splanchnic Mesoderm
stage 11+, section 35.
stage 11+, section 39.
stage 11+, section 7.
stage 11+; branchial arch mesoderm

Mouse

EmageMGI:1202715
MGI GXDMGI:1202715

Frog

Xenbase484804

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-051113-88
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