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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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PTPRU
protein tyrosine phosphatase, receptor type U

Gene

Official Symbol	PTPRU
Official Full Name	protein tyrosine phosphatase, receptor type U
CGNC ID	996
also known as	receptor-type tyrosine-protein phosphatase U\|R-PTP-U\|R-PTP-psi\|cRPTPPSI\|phosphoprotein phosphatase\|receptor tyrosine phosphatase\|receptor-type protein-tyrosine phosphatase psi, protein tyrosine phosphatase, receptor type, U , receptor tyrosine phosphatase Psi
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_204492
Polypeptide	NP_989823
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.43624

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	10076	ENSG00000060656		MIM:602454
Mouse	19273	ENSMUSG00000028909	All phenotypic alleles (2):Targeted, other(2)	MGI:1321151
Xenopus	733850			922687
Zebrafish	100331611, 335096, 563584	ENSDARG00000078090, ENSDARG00000092638	ZDB-GENE-030131-7036, ZDB-GENE-060503-232	ZFIN:ZDB-GENE-030131-7036, ZFIN:ZDB-GENE-060503-232

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	395153
Ensembl Gene
KEGG	gga:395153

Entry 1

GEISHA Id	RPTPΨ.Aerne.2003	Data Source	Publication
Complete cDNA Template Probe	show CGTTTCTTTCTTCTTTTCTTCGCCCTCGCACCATGCGCAGCGCCCGGGCGCTGCTGCTCGCCCTCGCCCTGCGGGTGTG CGCGTTGGACAGCGAGACGCCCTCGGCGGGCTGCACCTTCGAGGAGGACGACGACCTGAACCAGTGTGAGTACAGCCAG GGTGAGGATGACGACTTCGGGTGGGAGTTGGTCCGCAGCTACATGATGCCACACCTGACGGCTGACCTGCCCCACGGCT CCTACCTGATGGTGAACGCCTCGCAGCACGCCGCTGGCCAGAGGGCCCACCTGCTCTTCCAGGCGCTGAGCGAGAACGA CACCCACTGCCTGCAGTTCAGCTACTTCATGTACAGCCGTGATGGTCACAGCCCCGGCACCCTCAGCGCCTACGTGCGG GTGATGGGGGGCCCGGTGGGCAGTGCGGTCTGGAATGCCTCAGGCTCCCACGGCCGCCAGTGGCACCAGGCTGAGCTGG CCGTCAGCTTGTTCTGGCCCAGCGAGTACCAGGTCCTCTTCGAGGCGGTGATCTCCAGCGAGCGCCGGGGCTACCTTGG CTTGGATGACATCTTGCTCTTGAATTATCCATGCTCGAAAGCCCCTCACTTCTCCCGCCTGGGTGACGTGGAGGTGAAT GCGGGGCAAAATGCCACCTTCCAGTGTGTGGCTGCTGGCAAGGCTGCCGAGGCAGAGCGCTTCCTCATGCAGAGGCAGA GTGGCGAAGTGGTCCCCGCTGCCTCCGTGAAGCACATCAGCCACCGGCGCTTCCTGGCCACCTTCCAGCTGGACGAGGT GTCCAAAGGCGAGCAGGACCTGTACCGCTGTGTCACCCAGTCCAGCCGTGGCTCAGGGGTCTCCAACTTTGCTGAGCTC ATTGTGAAAGAGCCCCCAACACCCATCGCACCCCCCCAGCTGCTGCGGGCTGGCTCCACCTACCTCATCATCCAGCTCA ACACCAACTCCATCATCGGCGACGGCCCCATCGTGCGCAAGGAGATAGAGTACCGCATGACCTCGGGGCCATGGTCAGA GGTGCACGCTGTCAACATGCAGACCTACAAGCTCTGGCACCTGGATCCTGACACAGAGTACGAGATCAGCGTCCTGCTG ACGCGTCCCGGTGAAGGGGGCACAGGCAAACCGGGACCCCCCCTCATCAGCCGCACCAAGTGTGCAGAGCCCATGCGGG CCCCCAAAGGCCTGGCTTTCTCCGAGATCCAATCCAGGCAGCTGACACTGCAGTGGGAACCGCTGGGCTACAACCTGAC CCGCTGCCACACCTACAGCGTCTCGCTGTGCTACCGCTACCTGGTGGGCAGCGGCCTCAACCAGACCTTCCGCGAGTGC GCCAAGATGGAGCGCAACGCCAACCGCTACACCATCAAAAACCTGCTGCCCTACAGGAACATCCACGTCAAGCTCATCC TCTCCAACCCCGAGGGCCGCAAGGAGGGCAAGGAGGTGACGTTCCAGACGGATGAGGACGTGCCTGGTGGCATCGCCTC TGAGTCACTCACCTTCACCCCTCTGGAGGACATGATCTTTCTGAAGTGGGAGGAACCGGTGGAGCCCAATGGCCTCATC ACGCAGTACGAGATCAGCTACCAAAGCATTGAGTCCTCTGACCCAGCAGTCAACGTTCCCGGCCCGCGACGCACCGTCT CCAAGCTGCGCAATGAGACGTACCACGTCTTCTCCAACCTGCACCCTGGCACCACCTACCTCTTCTCAGTGCGTGCCCG CACAGGCAAGGGCTTTGGCCAGACAGCGCTCACAGAGATCACCACCAACATATCTGCTCCCACCTTCGACTATGGGGAT ATGCCATCACCTCTGGGCGAGTCAGAGAGCACAATCACGGTGCTGCTGCGGCCGGCGCAGGGCCGGGGGGCTCCCATCA GTACCTACCAGGTCATCGTGGAGGAGGACCGGCCCAAGAGGATCAAGCGGGAGCTGGGTGGGCAGGAGTGCTTCCCGGT GCCACTGACGTTTGATGATGCCATGTCTCGCGGCTCTGTGCACTATTTTGGGGCTGAGCTGCCTGCCAGCAGCCTCACT GAAGCCAAGCCCTTCACTGTAGGGGACAACCAGACCTACAGTGGCTACTGGAACCCGCCACTGGAGCCCAAGAAGGCCT ATCTCATCTACTTTCAGGCCATGAGCAACCTTAAAGGGGAAACCCGGCTCAACTGTATCCGCATTGCCCGCAAAGCTGC CTGCAAAGAGAGCAAACGGCCTCTGGAGGTGTCTCAGCACTCGGAGGAGATGGGGCTGATCCTGGGAATCTGTGCTGGT GGGCTCGTCGTCCTCATTATCCTGCTGGGAGCCATCATTGTTGTCATTCGGAAAGGCAAACCTGTCAACATGACCAAAG CAACAATTAATTACCGCCACGAGAAGACACACATGATGAGTGCCATCGACCGGAGCTTCACGGACCAGAGCACGCTGCA GGAGGATGAGAGGCTGGGGCTGTCCTTCATGGACACCCACAACTACAGCAACCGTGGTGACCAGCGCAGCAGTGTGGTC AATGAGTCCAGCAGCCTGCTGGGGGGATCTCCTCGCCGCCAGTGTGGCCGCAAAGGGTCCCCGTATCACACTGGGCAGC TGCACCCCGCCGTGCGCGTAGCAGATCTCCTCCAACACATCAACCAGATGAAGACAGCAGAAGGCTACGGCTTCAAGCA GGAGTATGAGAGCTTCTTTGAAGGCTGGGATGCTTCAAAGAAGAAAGACAAGACCAAAGGGAGACAGGATCACGTGTCG ACGTATGACCGCCACCGTGTGAAGCTCCATCCACTGCTGGGCGATCCCAACTCGGATTACATCAACGCCAACTACATTG ATGGTTATCACAGGTCCAACCACTTCATCGCCACCCAAGGTCCTAAGCAGGAGATGGTGTACGACTTCTGGCGCATGGT GTGGCAGGAGCACTGTTCCAGCATCGTGATGATAACCAAGCTGGTGGAAGTGGGCCGGGTGAAATGCTCCAAATATTGG CCGGATGACTCGGAGATGTATGGGGACATCAAGATCACCTTGGTGAAGTCAGAGATGCTGGCAGAGTACGCCGTGCGGA CCTTTGCTCTCGAGAGGCGAGGTTACTCAGCCCGGCACGAAGTGAAGCAGTTCCACTTCACATCCTGGCCTGAGCACGG CGTCCCCTACCACGCCACGGGGCTGCTGGCCTTCATCCGCCGTGTGAAGGCATCCACACCACCCGATGCTGGCCCCATC GTCATCCACTGCAGTGCTGGCACGGGGAGGACCGGCTGCTACATCGTTCTGGATGTTATGCTGGACATGGCCGAGTGTG AGGGTGTTGTGGACATCTACAACTGTGTGAAGACGCTGTGCTCACGGAGGATCAACATGATACAGACAGAGGAGCAGTA CATCTTCATCCACGATGCCATCCTGGAAGCCTGCCTGTGTGGTGAAACCAGCATCCCTGCCAGCGAGTTCAAGCCCACC TACAAGGAGATGGTGAGGATTGAGCCGCAGAGCAATTCCTCACAGCTGCGGGAGGAGTTCCAGACCTTGAACTCGGTGA CTCCCCACCTGGATGTGGAAGAGTGCAGCATCGCCCTCCTGCCCCGCAACCGGGAGAGGAACCGCAGCATGGACGTCCT GCCGCCGGACCGATGCCTTCCCTTCCTCATCTCCGTGGATGGAGACAGCAACAACTACATCAACGCGGCCTTAACCGAT AGCTACACTAAGAGTGCTGCCTTCATTGTCACCCTGCACCCGCTGCAGAACACCACCACCGACTTCTGGAGGTTGGTGT ATGACTATGGCTGCACCTCCATCGTTATGCTCAACCAGCTGAACCAGTCCAACTCCGCCTGGCCCTGCCTTCAGTACTG GCCTGAGCCTGGGCTCCAGCACTACGGCCCCATGGAGGTGGAGTACGTGTCAGGAGCAGCAGATGAGGACATCGTGTCC CGTCTCTTCCGAGTGCAGAACATAACCCGGCTGCAGGAGGGGCACCTGATGGTCCGGCACTTCCAGTACCTGCGGTGGT CAGCGTACAGAGACACCCCAGACTCCAAGAAGTCCTTCCTGCACCTCCTGGCCCAAGTGGAGAGGTGGCAGAAGGAGAG CGGCGATGGCAGGACTGTGGTGCACTGCTTGAATGGGGGTGGCCGGAGTGGCACCTACTGTGCCTCCACCATGATCCTG GAGATGATCAAGTGTCACAACATGGCAGATATCTTCTATGCTGCGAAGACCCTCCGTAACTACAAGCCAAATATGGTGG AGACCTTGGAGCAGTATCACTTCTGCTACGACATAGCACTGGAATACTTGGAGTCCCTGGAGACCAGATAGCACCTCGC CAGGAGGGCGAAGGCAGAGGTTTGCTTAGGGTTTGTGCCAAACTCGCGTTTTTGCACTTGGACGTTGCGTTAGTGCTGA AGGTGAGGAGGGGGAAACAGCAAAGGACCACACACAGACACAAATCGGGAGCAACAAAAGGACGTGGGGAGGTGCTGCC TGTTCTCCATCCTCTGCTCTCCGCCTTCCCTCCCACTGCTCCAAGTGCATGGCCATGGGTCGATGCTGCATCTCACCTC GTCCCATCCCTGCTGTGATGTGGAGTTGGTGAGCATGGGA
Citation	Aerne B, Stoker A, Ish-Horowicz D. Chick receptor tyrosine phosphatase Psi is dynamically expressed during somitogenesis. Gene Expr Patterns. 2003 Jun;3(3):325-9.
Copyright	Reprinted from Gene Expression Patterns, Volume 3, Issue 3, Birgit Aerne, Andrew Stoker, and David Ish-Horowicz, Chick receptor tyrosine phosphatase Ψ is dynamically expressed during somitogenesis, Pages 325-329, Copyright 2003, with permission from Elsevier. Copyright © 2003 Elsevier B.V. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc #NM_204492).

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

Early Mesoderm
Head Process

7-12

stage 7

stage 8

stage 9

stage 12

Forebrain
Head Mesenchyme
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
Renal
Somites
Spinal Cord

amniocardiac vesicle
head fold
neural fold
pronephros

13-18

stage 18

Dermatome
Hindbrain
Leg Mesenchyme
Lens
Limb Mesoderm
Midbrain
Myotome
Nasal Placcode/Nerve
Nephric Tubules
Neural Plate/Tube
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Renal
Rhombomeres
Spinal Cord
Telencephalon
Wing Mesenchyme

mesonephros
r1

Entry 2

GEISHA Id	RPTPlambda.Badde.2005	Data Source	Publication
Complete cDNA Template Probe	show CTCATCAGCCGCACCAAGTGTGCAGAGCCCATGCGGGCCCCCAAAGGCCTGGCTTTCTCCGAGATCCAATCCAGGCAGC TGACACTGCAGTGGGAACCGCTGGGCTACAACCTGACCCGCTGCCACACCTACAGCGTCTCGCTGTGCTACCGCTACCT GGTGGGCAGCGGCCTCAACCAGACCTTCCGCGAGTGCGCCAAGATGGAGCGCAACGCCAACCGCTACACCATCAAAAAC CTGCTGCCCTACAGGAACATCCACGTCAAGCTCATCCTCTCCAACCCCGAGGGCCGCAAGGAGGGCAAGGAGGTGACGT TCCAGACGGATGAGGACGTGCCTGGTGGCATCGCCTCTGAGTCACTCACCTTCACCCCTCTGGAGGACATGATCTTTCT GAAGTGGGAGGAACCGGTGGAGCCCAATGGCCTCATCACGCAGTACGAGATCAGCTACCAAAGCATTGAGTCCTCTGAC CCAGCAGTCAACGTTCCCGGCCCGCGACGCACCGTCTCCAAGCTGCGCAATGAGACGTACCACGTCTTCTCCAACCTGC ACCCTGGCACCACCTACCTCTTCTCAGTGCGTGCCCGCACAGGCAAGGGCTTTGGCCAGACAGCGCTCACAGAGATCAC
Citation	Badde A, Bumsted-O'Brien KM, Schulte D. Chick receptor protein tyrosine phosphatase lambda/psi (cRPTPlambda/cRPTPpsi) is dynamically expressed at the midbrain-hindbrain boundary and in the embryonic neural retina. Gene Expr Patterns. 2005 Aug;5(6):786-91.
Copyright	Copyright © 2005 Elsevier B.V. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204492).