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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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CRABP1
cellular retinoic acid binding protein 1

Gene

Official Symbol	CRABP1
Official Full Name	cellular retinoic acid binding protein 1
CGNC ID	49086
also known as	CRABP-I, cCRABP-I, cellular retinoic acid-binding protein 1\|cellular retinoic acid binding protein I (CRABP-I) homologue\|cellular retinoic acid-binding protein I
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001030539
Polypeptide	NP_001025710
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.4546

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	1381	ENSG00000166426		MIM:180230
Mouse	12903	ENSMUSG00000032291	All phenotypic alleles (3):Targeted, knock-out(2) Targeted, other(1)	MGI:88490
Xenopus	100037896, 100174812			962770
Zebrafish	171479, 415102	ENSDARG00000045926, ENSDARG00000035904	ZDB-GENE-020320-3, ZDB-GENE-040624-3	ZFIN:ZDB-GENE-020320-3, ZFIN:ZDB-GENE-040624-3

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	374211
Ensembl Gene	ENSGALG00000003193
KEGG	gga:374211

Entry 1

GEISHA Id	CRABP1.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	ACATCAAAACTTCCACCACTGTCC
Reverse cDNA Template Primer	ATTAACCCTCACTAAAGGACACACACGGTCACATACAACACC	cDNA Template Length	373
Forward cDNA Template Probe	show `CATTAGTACAGCACACACAAATACTCATTCTACTGGGGGCTTTCCACAGCTCTCCACCTCATCCCAGGGTGACAAGTAA ATGGATGTTTTTACTCTCTTACATAAATTCTTGTGCACACAACATCATCAGCACCAAAGGTCAAAATCAGCTCATCATT AGCTAATTCTCGAGTCCAGTATGTTTTAGGACCATCTCCCTCAATAAGAGTTTGTTTGCAATAGATCTTGTTTTCATTC TCCCAGGTGGCCAAACTCCTGCATTTTCGGCCATCCACCGTCTCCTCCTCGAAGCTCTCCCCGATTTTGAAGTTGATTT CCGTGGTGCGGACAGTGGTGGAAGTTTTTGATGTA`

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

stage 6

Area Opaca
Early Endoderm
Early Mesoderm
Extraembryonic
Extraembryonic Mesoderm
Lateral Plate Mesoderm

7-12

stage 7

stage 9

stage 12

Ear/Otic Placode
Endoderm
Extraembryonic
Lateral Plate Mesoderm
Neural Crest
Neural Plate/Tube
Spinal Cord

13-18

stage 14

stage 15

stage 16

Ear/Otic Placode
Face Mesenchyme
Hindbrain
Neural Crest
Pharyngeal Arches and Clefts
Spinal Cord
Spinal Ganglia and Nerves

19-24

stage 22

stage 23

Face Mesenchyme
Forebrain
Foregut
Hindbrain
Leg Mesenchyme
Liver
Midbrain
Neural Crest
Pharyngeal Arches and Clefts
Rhombomeres
Sclerotome
Spinal Cord
Spinal Ganglia and Nerves
Stomach
Trunk Mesenchyme
Wing Mesenchyme

stage 25

Cranial PNS
Face Mesenchyme
Forebrain
Foregut
Hindbrain
Leg Mesenchyme
Midbrain
Neural Crest
Pharyngeal Arches and Clefts
Spinal Cord
Spinal Ganglia and Nerves
Trunk Mesenchyme
Wing Mesenchyme

Entry 2

GEISHA Id	CRABP1.Thompson.2010b	Data Source	Publication
Complete cDNA Template Probe	show GCGCTGCTCCCAGGTGAAGGGCCGGGGGCCGGTGGGTGTGACCCGCGCTCCCCTCCGCCGCCGCGGTCCGCCCCGCTCA CTCGGTGCCCGAGCCGCAGAGCGAGCAGCATCGCGTCCCCGCCGCCCGCCCCGCCATGCCTAACTTCGCCGGCACCTGG AAGATGAGGAGCAGCGAGAATTTCGACGAGCTCCTCAAAGCGCTGGGTGTCAACGCCATGCTCAGGAAGGTGGCGGTGG CGGCCGCCTCCAAACCCCACGTGGAGATCCGCCAGGACGGGGACCAGTTCTACATCAAAACTTCCACCACTGTCCGCAC CACGGAAATCAACTTCAAAATCGGGGAGAGCTTCGAGGAGGAGACGGTGGATGGCCGAAAATGCAGGAGTTTGGCCACC TGGGAGAATGAAAACAAGATCTATTGCAAACAAACTCTTATTGAGGGAGATGGTCCTAAAACATACTGGACTCGAGAAT TAGCTAATGATGAGCTGATTTTGACCTTTGGTGCTGATGATGTTGTGTGCACAAGAATTTATGTAAGAGAGTAAAAACA TCCATTTACTTGTCACCTGGGATGAGGTGGAGAGCTGTGGAAAGCCCCAGTAGAATGAGTATTTGTGTGTGCTGTTACT AATGCGGTGTTGTATGTGACCGTGTGTGTTATATCTGAATCCATATCCTGTTAAGTGTATTCTACTTTATGTTTCATCT CAGATGTTACTCCTTTCTCACTTTTATGCAGTCATTTTTTTGCATCTGCTTTGTATTCTGTAGTTGTCATTTGCAATGG TTTTACCAATTATTAAACTTATTGGGCATAACACAAAAAA
Citation	H. Thompson, J.S. Griffiths, G. Jeffery, I.M. McGonnell. The retinal pigment epithelium of the eye regulates the development of scleral cartilage. Dev Biol. 2010 November 1; 347(1-13): 4052.
Copyright	Copyright © 2010 Elsevier Inc.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_001030539.1 ).

Stage

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stage 19

Face Mesenchyme
Midbrain
Neural Crest
Pharyngeal Arches and Clefts

Entry 3

GEISHA Id	CRABP1.Wilson.2007	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GCGCTGCTCCCAGGTGAAGGGCCGGGGGCCGGTGGGTGTGACCCGCGCTCCCCTCCGCCGCCGCGGTCCGCCCCGCTCA CTCGGTGCCCGAGCCGCAGAGCGAGCAGCATCGCGTCCCCGCCGCCCGCCCCGCCATGCCTAACTTCGCCGGCACCTGG AAGATGAGGAGCAGCGAGAATTTCGACGAGCTCCTCAAAGCGCTGGGTGTCAACGCCATGCTCAGGAAGGTGGCGGTGG CGGCCGCCTCCAAACCCCACGTGGAGATCCGCCAGGACGGGGACCAGTTCTACATCAAAACTTCCACCACTGTCCGCAC CACGGAAATCAACTTCAAAATCGGGGAGAGCTTCGAGGAGGAGACGGTGGATGGCCGAAAATGCAGGAGTTTGGCCACC TGGGAGAATGAAAACAAGATCTATTGCAAACAAACTCTTATTGAGGGAGATGGTCCTAAAACATACTGGACTCGAGAAT TAGCTAATGATGAGCTGATTTTGACCTTTGGTGCTGATGATGTTGTGTGCACAAGAATTTATGTAAGAGAGTAAAAACA TCCATTTACTTGTCACCTGGGATGAGGTGGAGAGCTGTGGAAAGCCCCAGTAGAATGAGTATTTGTGTGTGCTGTTACT AATGCGGTGTTGTATGTGACCGTGTGTGTTATATCTGAATCCATATCCTGTTAAGTGTATTCTACTTTATGTTTCATCT CAGATGTTACTCCTTTCTCACTTTTATGCAGTCATTTTTTTGCATCTGCTTTGTATTCTGTAGTTGTCATTTGCAATGG TTTTACCAATTATTAAACTTATTGGGCATAACACAAAAAA
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_001030539.1

Stage

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Location (click to highlight)

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25-28

stage 26

stage 28

Hindbrain
Rhombomeres

Entry 4

GEISHA Id	CRABP1.Bandyopadhyay.2008	Data Source	Publication
Complete cDNA Template Probe	show GCGCTGCTCCCAGGTGAAGGGCCGGGGGCCGGTGGGTGTGACCCGCGCTCCCCTCCGCCGCCGCGGTCCGCCCCGCTCA CTCGGTGCCCGAGCCGCAGAGCGAGCAGCATCGCGTCCCCGCCGCCCGCCCCGCCATGCCTAACTTCGCCGGCACCTGG AAGATGAGGAGCAGCGAGAATTTCGACGAGCTCCTCAAAGCGCTGGGTGTCAACGCCATGCTCAGGAAGGTGGCGGTGG CGGCCGCCTCCAAACCCCACGTGGAGATCCGCCAGGACGGGGACCAGTTCTACATCAAAACTTCCACCACTGTCCGCAC CACGGAAATCAACTTCAAAATCGGGGAGAGCTTCGAGGAGGAGACGGTGGATGGCCGAAAATGCAGGAGTTTGGCCACC TGGGAGAATGAAAACAAGATCTATTGCAAACAAACTCTTATTGAGGGAGATGGTCCTAAAACATACTGGACTCGAGAAT TAGCTAATGATGAGCTGATTTTGACCTTTGGTGCTGATGATGTTGTGTGCACAAGAATTTATGTAAGAGAGTAAAAACA TCCATTTACTTGTCACCTGGGATGAGGTGGAGAGCTGTGGAAAGCCCCAGTAGAATGAGTATTTGTGTGTGCTGTTACT AATGCGGTGTTGTATGTGACCGTGTGTGTTATATCTGAATCCATATCCTGTTAAGTGTATTCTACTTTATGTTTCATCT CAGATGTTACTCCTTTCTCACTTTTATGCAGTCATTTTTTTGCATCTGCTTTGTATTCTGTAGTTGTCATTTGCAATGG TTTTACCAATTATTAAACTTATTGGGCATAACACAAAAAA
Citation	Bandyopadhyay A, Kubilus JK, Crochiere ML, Linsenmayer TF, Tabin CJ. Identification of unique molecular subdomains in the perichondrium and periosteum and their role in regulating gene expression in the underlying chondrocytes. Dev Biol. 2008 Sep 1;321(1):162-74. doi: 10.1016/j.ydbio.2008.06.012. Epub 2008 Jun 16.
Copyright	Copyright © 2013 Elsevier B.V. All rights reserved.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_001030539.1

Stage

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Location (click to highlight)

Comments (click to highlight)

31-38

stage 38

Leg Bones
Leg Mesenchyme

Entry 5

GEISHA Id	CRABPL.Gustafson.2000	Data Source	Publication
Complete cDNA Template Probe	show GCGCTGCTCCCAGGTGAAGGGCCGGGGGCCGGTGGGTGTGACCCGCGCTCCCCTCCGCCGCCGCGGTCCGCCCCGCTCA CTCGGTGCCCGAGCCGCAGAGCGAGCAGCATCGCGTCCCCGCCGCCCGCCCCGCCATGCCTAACTTCGCCGGCACCTGG AAGATGAGGAGCAGCGAGAATTTCGACGAGCTCCTCAAAGCGCTGGGTGTCAACGCCATGCTCAGGAAGGTGGCGGTGG CGGCCGCCTCCAAACCCCACGTGGAGATCCGCCAGGACGGGGACCAGTTCTACATCAAAACTTCCACCACTGTCCGCAC CACGGAAATCAACTTCAAAATCGGGGAGAGCTTCGAGGAGGAGACGGTGGATGGCCGAAAATGCAGGAGTTTGGCCACC TGGGAGAATGAAAACAAGATCTATTGCAAACAAACTCTTATTGAGGGAGATGGTCCTAAAACATACTGGACTCGAGAAT TAGCTAATGATGAGCTGATTTTGACCTTTGGTGCTGATGATGTTGTGTGCACAAGAATTTATGTAAGAGAGTAAAAACA TCCATTTACTTGTCACCTGGGATGAGGTGGAGAGCTGTGGAAAGCCCCAGTAGAATGAGTATTTGTGTGTGCTGTTACT AATGCGGTGTTGTATGTGACCGTGTGTGTTATATCTGAATCCATATCCTGTTAAGTGTATTCTACTTTATGTTTCATCT CAGATGTTACTCCTTTCTCACTTTTATGCAGTCATTTTTTTGCATCTGCTTTGTATTCTGTAGTTGTCATTTGCAATGG TTTTACCAATTATTAAACTTATTGGGCATAACACAAAAAA
Citation	Gustafson AL, Mason I. Expression of receptor tyrosine phosphatase gamma during early development of the chick embryo. Mech Dev. 2000 Nov;98(1-2):183-6.
Copyright	Copyright © 2000 Elsevier Science Ireland Ltd.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001030539).