GEISHA - A Chicken Embryo Gene Expression Database
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VEGFD
vascular endothelial growth factor D

Gene
Official SymbolVEGFD
Official Full Namevascular endothelial growth factor D
CGNC ID12402
also known asFIGF, vascular endothelial growth factor D|c-fos induced growth factor (vascular endothelial growth factor D), VEGF-D, c-fos induced growth factor, vascular endothelial growth factor D, FigF
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204568
PolypeptideNP_989899
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.3219
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human2277ENSG00000165197MIM:300091
Mouse14205ENSMUSG00000031380All phenotypic alleles (3):Targeted, knock-out(2) Targeted, other(1) MGI:108037
Xenopus100144690, 100158352487324
Zebrafish678512ENSDARG00000056624ZDB-GENE-070810-6ZFIN:ZDB-GENE-070810-6
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene395255
Ensembl Gene
KEGGgga:395255

Entry 1

GEISHA IdFIGF.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template Primer5’-ACTTGTGAGAGTGGAGCTGC-3’
Reverse cDNA Template Primer5’-ATTAACCCTCACTAAAGGATGGTGTACTGGTGACGCTG-3’cDNA Template Length906
Complete cDNA Template Probeshow
ACTTGTGAGAGTGGAGCTGCATGCATACAGATACAAATCTATTTAAAGCCTTATCATGATTTTCCTTCAAATGTATCTA
AAATCTACTCTAAGAAATTACAGTCTCTAGGTGAATTGTTCAAAATAATTGCTTAGAAGAGTGAAGAGCGAGATATTTA
CTCTTGTGTGTTGGAATCCTTTGTGAATTTATAACAGAAATTTGGAAGCTTTTCTTGTCTGTTGTGGTGAAATGCATTT
CAAAAGAGACGCCTCCAGCTGTATGACAACAACTGCGTAGTAACCTGCGGATTTAAACATCAGAATGTACAAACCGTGG
GTGACTGTGAATATTTTCATGATTTCATTTCTGCATTTGCTGCAAGGATCTGACTATGAGAATGGATCTGTGAAGAGGA
CATCTCTATCAGCATTGGAGCGGTCAGAGCAACAGATCAGGAGAGCATCCAGCCTGGAAGAGCTCCTTCGAATAACTCA
TGCTGAGGACTGGAAGCTGTGGAAATGCAGGCTAAAACTCAAAAGCCTGGCCAATTTAGACTCCCGCTCTGCATCACAT
CGCTCCACCAGATTTGCTGCTGCTTTCTATGATATCGATACACTGAAAGTCATAGATGAAGAATGGCAGAAGACTCAAT
GTGTGCCAAGAGAAACCTGTGTGGAAGTTGCCAAAGAGCTGGGTACGACAACCAACAAGTTCTTCAAGCCACCCTGTGT
GAATGTGTTCAGATGTGGAGGCTGCTGCAATGAGGAGAGTCTGAGCTGCATGAACACGAGTACAACTTATGTGTCAAAA
ACGCTCTTTGAGATCTCGGTTCCTTTGACAAGTGTTCCAGAGCCTGTGCCAATCAAAATTGCCAATCACACCGGTTGTA
AGTGTTTGTCAAATACCCAGCGTCACCAGTACACCAT
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
Unlabeled
no expression stages 4-12
19-24
stage 19
stage 19
stage 19
stage 19
stage 22
stage 23
Ear/Otic Placode
Eye
Forebrain
Head Mesenchyme
Leg Mesenchyme
Midbrain
Nasal Placode/Nerve
Pharyngeal Arches and Clefts
Sclerotome
Spinal Ganglia and Nerves
Wing Mesenchyme
 
25-26
stage 26
stage 26
stage 26
stage 26
Forebrain
Head Mesenchyme
Midbrain
Nasal Placode/Nerve
Pharyngeal Arches and Clefts
Sclerotome
Spinal Cord
Spinal Ganglia and Nerves
Wing Mesenchyme
 

Entry 2

GEISHA Idrigf.Davey.2007Data SourcePublication
Complete cDNA Template Probeshow
AAGCGGATTTAAACATCAGAATGTACAAACCGTGGGTGACTGTGAATATTTTCATGATTTCATTTCTGCATTTGCTGCA
AGGATCTGACTATGAGAATGGATCTGTGAAGAGGACATCTCTATCAGCATTGGAGCGGTCAGAGCAACAGATCAGGAGA
GCATCCAGCCTGGAAGAGCTCCTTCGAATAACTCATGCTGAGGACTGGAAGCTGTGGAAATGCAGGCTAAAACTCAAAA
GCCTGGCCAATTTAGACTCCCGCTCTGCATCACATCGCTCCACCAGATTTGCTGCTGCTTTCTATGATATCGATACACT
GAAAGTCATAGATGAAGAATGGCAGAAGACTCAATGTGTGCCAAGAGAAACCTGTGTGGAAGTTGCCAAAGAGCTGGGT
ACGACAACCAACAAGTTCTTCAAGCCACCCTGCGTGAATGTGTTCAGATGTGGAGGCTGCTGCAATGAGGAGAGTCTGA
GCTGCATGAACACGAGTACAACTTATGTGTCAAAAACGCTCTTTGAGATCTCGGTTCCTTTGACAAGTGTTCCAGAGCC
CGTGCCAATCAAAATTGCCAATCACACCGGTTGTAAGTGTTTGTCAAATACCCAGCGTCACCAGTACACCATCATACGA
AGATCGGTTCAGTACCCAGAAGAAGATGGTTGTCCCTTTACGAACAAACTTTGCCATAATGGATGGGTCTGGGATAGTG
ACAAATGTGAATGTGTTGCAGATGTACAGCACTCAAACAGACGGGAAGGGCCTCCCTCCTCTTGCTGAGCTGGCTATGT
GTGGACAATATATGGAATTTGATGAAGAAAATTGTGAATGCATCTGCAGGCAGAAGTGTCCCACAGACTTCTTTCAAAG
TAAAGAGAACTGCAGCTGCTATTTGTGCAGGGAGAACCAGGAAAGCTGTGCTCAGAAACACAAGATATTTCATGCCGAA
ACCTGTAGGCTGTGAGGACAAATGTCCATCGCAACCCAGAACATGCCCAACTGCAAAGCCAACATGTCCCAGGCATTGT
CGATGTCCAAAGGAGAAGAGAAATTCTCATGGGTCACAAAGCAAAGAAAATCCTTGACTCACCTTCTTCAGTTCTCCAG
AAATCCACTGCTTTGCAAAGTAGCTGTCACTGACTTCCAAACAGTAGTAAAAACGAATGTCTTCCACATTAACAGCAGA
AGAATGAATCCAGTCTGCATTTATTTATTAGAGTAATCACTAACTGCAGGTCAGTCCTCTGGGGCATTGATAATTGTTC
TCTAAGAGGCAAAAACAACTGATGAAATTCTGTCTATGTGGAAGAAAGAGCAGAAAGAGCCAGTTCAATGTCATGCTAC
AGAAGATGAAGCTGGTATATTGGTAACAGAGTCACAGTCAACAGCCAGCCTTTCAGAAATTGAGACTAGATAACCTTAG
CCTCTGAATCCTTAGCTAATGCAACTCTAGGGTAAAACTTCCTTCAGAAATTCAGTGTGCAGGATTTGGCTTCTAATAG
GGTCAGCACTGAGTTATTTGATCTACTGTCCAGCTTTAATTATCATTTTGAAGTTATTGTACAACTACTGTCAGATGTG
CCATATTTAATTGTATATAAGAAAATAAATACATCAGTTATTCGAAAAAAAAAAAAAAAAAA
CitationDavey MG, James J, Paton IR, Burt DW, Tickle C. Analysis of talpid3 and wild-type chicken embryos reveals roles fro Hedgehog signalling in development of the limb bud vasculature. Dev Biol. 2007 Jan 1;301(1):155-65.
CopyrightReprinted with permission from Elsevier. Copyright © 2007 Elsevier B.V. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc #NM_204568.1), Figf, based on author notes in the original Rigf manuscript.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-22
stage 22
Wing
 

Entry 3

GEISHA IdVEGF-D.Davey.2007Data SourcePublication
Complete cDNA Template Probeshow
AAGCGGATTTAAACATCAGAATGTACAAACCGTGGGTGACTGTGAATATTTTCATGATTTCATTTCTGCATTTGCTGCA
AGGATCTGACTATGAGAATGGATCTGTGAAGAGGACATCTCTATCAGCATTGGAGCGGTCAGAGCAACAGATCAGGAGA
GCATCCAGCCTGGAAGAGCTCCTTCGAATAACTCATGCTGAGGACTGGAAGCTGTGGAAATGCAGGCTAAAACTCAAAA
GCCTGGCCAATTTAGACTCCCGCTCTGCATCACATCGCTCCACCAGATTTGCTGCTGCTTTCTATGATATCGATACACT
GAAAGTCATAGATGAAGAATGGCAGAAGACTCAATGTGTGCCAAGAGAAACCTGTGTGGAAGTTGCCAAAGAGCTGGGT
ACGACAACCAACAAGTTCTTCAAGCCACCCTGCGTGAATGTGTTCAGATGTGGAGGCTGCTGCAATGAGGAGAGTCTGA
GCTGCATGAACACGAGTACAACTTATGTGTCAAAAACGCTCTTTGAGATCTCGGTTCCTTTGACAAGTGTTCCAGAGCC
CGTGCCAATCAAAATTGCCAATCACACCGGTTGTAAGTGTTTGTCAAATACCCAGCGTCACCAGTACACCATCATACGA
AGATCGGTTCAGTACCCAGAAGAAGATGGTTGTCCCTTTACGAACAAACTTTGCCATAATGGATGGGTCTGGGATAGTG
ACAAATGTGAATGTGTTGCAGATGTACAGCACTCAAACAGACGGGAAGGGCCTCCCTCCTCTTGCTGAGCTGGCTATGT
GTGGACAATATATGGAATTTGATGAAGAAAATTGTGAATGCATCTGCAGGCAGAAGTGTCCCACAGACTTCTTTCAAAG
TAAAGAGAACTGCAGCTGCTATTTGTGCAGGGAGAACCAGGAAAGCTGTGCTCAGAAACACAAGATATTTCATGCCGAA
ACCTGTAGGCTGTGAGGACAAATGTCCATCGCAACCCAGAACATGCCCAACTGCAAAGCCAACATGTCCCAGGCATTGT
CGATGTCCAAAGGAGAAGAGAAATTCTCATGGGTCACAAAGCAAAGAAAATCCTTGACTCACCTTCTTCAGTTCTCCAG
AAATCCACTGCTTTGCAAAGTAGCTGTCACTGACTTCCAAACAGTAGTAAAAACGAATGTCTTCCACATTAACAGCAGA
AGAATGAATCCAGTCTGCATTTATTTATTAGAGTAATCACTAACTGCAGGTCAGTCCTCTGGGGCATTGATAATTGTTC
TCTAAGAGGCAAAAACAACTGATGAAATTCTGTCTATGTGGAAGAAAGAGCAGAAAGAGCCAGTTCAATGTCATGCTAC
AGAAGATGAAGCTGGTATATTGGTAACAGAGTCACAGTCAACAGCCAGCCTTTCAGAAATTGAGACTAGATAACCTTAG
CCTCTGAATCCTTAGCTAATGCAACTCTAGGGTAAAACTTCCTTCAGAAATTCAGTGTGCAGGATTTGGCTTCTAATAG
GGTCAGCACTGAGTTATTTGATCTACTGTCCAGCTTTAATTATCATTTTGAAGTTATTGTACAACTACTGTCAGATGTG
CCATATTTAATTGTATATAAGAAAATAAATACATCAGTTATTCGAAAAAAAAAAAAAAAAAA
CitationDavey MG, James J, Paton IR, Burt DW, Tickle C. Analysis of talpid3 and wild-type chicken embryos reveals roles fro Hedgehog signalling in development of the limb bud vasculature. Dev Biol. 2007 Jan 1;301(1):155-65.
CopyrightReprinted with permission from Elsevier. Copyright © 2007 Elsevier B.V. All rights reserved.
CommentsAuthors said Probe = VEGF-D (UMIST ChEST 603493810F1). As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204568.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 22
Wing
 
25
stage 25
Wing
 

Entry 4

GEISHA IdVEGFD.Dunn.2011Data SourcePublication
Complete cDNA Template Probeshow
AAGCGGATTTAAACATCAGAATGTACAAACCGTGGGTGACTGTGAATATTTTCATGATTTCATTTCTGCATTTGCTGCA
AGGATCTGACTATGAGAATGGATCTGTGAAGAGGACATCTCTATCAGCATTGGAGCGGTCAGAGCAACAGATCAGGAGA
GCATCCAGCCTGGAAGAGCTCCTTCGAATAACTCATGCTGAGGACTGGAAGCTGTGGAAATGCAGGCTAAAACTCAAAA
GCCTGGCCAATTTAGACTCCCGCTCTGCATCACATCGCTCCACCAGATTTGCTGCTGCTTTCTATGATATCGATACACT
GAAAGTCATAGATGAAGAATGGCAGAAGACTCAATGTGTGCCAAGAGAAACCTGTGTGGAAGTTGCCAAAGAGCTGGGT
ACGACAACCAACAAGTTCTTCAAGCCACCCTGCGTGAATGTGTTCAGATGTGGAGGCTGCTGCAATGAGGAGAGTCTGA
GCTGCATGAACACGAGTACAACTTATGTGTCAAAAACGCTCTTTGAGATCTCGGTTCCTTTGACAAGTGTTCCAGAGCC
CGTGCCAATCAAAATTGCCAATCACACCGGTTGTAAGTGTTTGTCAAATACCCAGCGTCACCAGTACACCATCATACGA
AGATCGGTTCAGTACCCAGAAGAAGATGGTTGTCCCTTTACGAACAAACTTTGCCATAATGGATGGGTCTGGGATAGTG
ACAAATGTGAATGTGTTGCAGATGTACAGCACTCAAACAGACGGGAAGGGCCTCCCTCCTCTTGCTGAGCTGGCTATGT
GTGGACAATATATGGAATTTGATGAAGAAAATTGTGAATGCATCTGCAGGCAGAAGTGTCCCACAGACTTCTTTCAAAG
TAAAGAGAACTGCAGCTGCTATTTGTGCAGGGAGAACCAGGAAAGCTGTGCTCAGAAACACAAGATATTTCATGCCGAA
ACCTGTAGGCTGTGAGGACAAATGTCCATCGCAACCCAGAACATGCCCAACTGCAAAGCCAACATGTCCCAGGCATTGT
CGATGTCCAAAGGAGAAGAGAAATTCTCATGGGTCACAAAGCAAAGAAAATCCTTGACTCACCTTCTTCAGTTCTCCAG
AAATCCACTGCTTTGCAAAGTAGCTGTCACTGACTTCCAAACAGTAGTAAAAACGAATGTCTTCCACATTAACAGCAGA
AGAATGAATCCAGTCTGCATTTATTTATTAGAGTAATCACTAACTGCAGGTCAGTCCTCTGGGGCATTGATAATTGTTC
TCTAAGAGGCAAAAACAACTGATGAAATTCTGTCTATGTGGAAGAAAGAGCAGAAAGAGCCAGTTCAATGTCATGCTAC
AGAAGATGAAGCTGGTATATTGGTAACAGAGTCACAGTCAACAGCCAGCCTTTCAGAAATTGAGACTAGATAACCTTAG
CCTCTGAATCCTTAGCTAATGCAACTCTAGGGTAAAACTTCCTTCAGAAATTCAGTGTGCAGGATTTGGCTTCTAATAG
GGTCAGCACTGAGTTATTTGATCTACTGTCCAGCTTTAATTATCATTTTGAAGTTATTGTACAACTACTGTCAGATGTG
CCATATTTAATTGTATATAAGAAAATAAATACATCAGTTATTCGAAAAAAAAAAAAAAAAAA
CitationDunn IC, Paton IR, Clelland AK, Sebastian S, Johnson EJ, McTeir L, Windsor D, Sherman A, Sang H, Burt DW, Tickle C, Davey MG. The chicken polydactyly (Po) locus causes allelic imbalance and ectopic expression of Shh during limb development. Dev Dyn. 2011 May;240(5):1163-72.
CopyrightCopyright © 2011 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204568.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-27
stage 27
stage 27
Limb Buds
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.3219

Mouse

EmageMGI:108037
EurexpressMGI:108037
MGI GXDMGI:108037

Frog

Xenbase487324

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-070810-6
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