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A chicken embryo gene expression database 		 
GEISHA - A Chicken Embryo Gene Expression Database
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Gene Expression Report

Probe 1

GEISHA IdDkk1.Chapman.2004
 NCBIEnsembl
Gene NameDKK1Q8UUX3_CHICK
AliasesDKK1, dickkopf homolog 1 (Xenopus laevis), Official 
Gene Descriptiondickkopf homolog 1 (Xenopus laevis)Dkk-1 (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q8UUX3]
Gene Ontologyshow
GO:0005576 extracellular region IEA
GO:0007275 multicellular organismal development IEA
GO:0030178 negative regulation of Wnt receptor signaling pathway IEA
NCBI Nucleotide HitXM_421563 show details
scoreevaluealignment lengthdescription
5600.0572PREDICTED: Gallus gallus dickkopf homolog 1 (Xenopus laevis) (DKK1), mRNA
Ensembl Genome Map
contig view
CitationChapman, S, Brown, R, Lees, L, Schoenwolf, G, Lumsden, A. Expression Analysis of Chick Wnt and Frizzled Genes and Selected Inhibitors in Early Chick Patterning. Dev Dyn. 2004 Mar;229(3):668-76.
CopyrightWiley-Liss, Inc. 2004
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # AY049017).
Complete Sequenceshow
CGACGAACGCCCGCGCCCGCCTGGCCGCCCGACGCCAAAGGTGAGGAGGGCGACTTCTGCCTGCGCTCGTCGGACTGCG
CGGCGGGGCTGTGCTGCGCCCGCCACTTCTGGTCCAAGATCTGCAAACCCGTGCTGCGCGAGGGGCAGGTGTGCACCCG
GCACCGCCGGAAAGGAGCCCACGGCCTCGAGATCTTCCAGCGCTGCCCCTGCGCCGAGGGCATGGCGTGCCGCCCGCAG
CGCGACCGCGGCGGTCCCGACGCCTCCCGCCTGCACACTTGCCAGCGGCACTGAGCGACGCCGCGGGGCGGACCGAGGA
TGGACGGACGGACGGACGGACGGGGGGATGGACTCTAGCCCCGCTCGTGGGAGCTCCCCGCTGTGCGCACAGCCGGAGC
AGAAGGTTGTTTCTCGAGGGAACTACTCTTAAGCGACTGATTGCAGTACGTTACTGTGTTGTGAATATGGAGGTGGCAC
TTAGTGTACAGACGTTCTGAGTGAGCCGCCCGGGCGCTCCTCCAGGCAGGACTGGGACGTGGTACGCGCTGGGTTTCCA
GTTGCGCTCGATGGACGCG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-5
stage 4
stage 4
stage 5
stage 5

Forebrain

Hensen's Node

Mesoderm, early

Neural Plate/Tube

Primitive Streak

rostral neural plate

Probe 2

GEISHA IdDickkopf1.Chapman.2002
 NCBIEnsembl
Gene NameDKK1Q8UUX3_CHICK
AliasesDKK1, dickkopf homolog 1 (Xenopus laevis), Official 
Gene Descriptiondickkopf homolog 1 (Xenopus laevis)Dkk-1 (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q8UUX3]
Gene Ontologyshow
GO:0005576 extracellular region IEA
GO:0007275 multicellular organismal development IEA
GO:0030178 negative regulation of Wnt receptor signaling pathway IEA
NCBI Nucleotide HitXM_421563 show details
scoreevaluealignment lengthdescription
5600.0572PREDICTED: Gallus gallus dickkopf homolog 1 (Xenopus laevis) (DKK1), mRNA
Ensembl Genome Map
contig view
CitationChapman SC, Schubert FR, Schoenwolf GC, Lumsden A. Analysis of spatial and temporal gene expression patterns in blastula and gastrula stage chick embryos. Dev Biol. 2002 May 1;245(1):187-99.
Copyright2002 Elsevier Science (USA). All rights reserved.
Complete Sequenceshow
CGACGAACGCCCGCGCCCGCCTGGCCGCCCGACGCCAAAGGTGAGGAGGGCGACTTCTGCCTGCGCTCGTCGGACTGCG
CGGCGGGGCTGTGCTGCGCCCGCCACTTCTGGTCCAAGATCTGCAAACCCGTGCTGCGCGAGGGGCAGGTGTGCACCCG
GCACCGCCGGAAAGGAGCCCACGGCCTCGAGATCTTCCAGCGCTGCCCCTGCGCCGAGGGCATGGCGTGCCGCCCGCAG
CGCGACCGCGGCGGTCCCGACGCCTCCCGCCTGCACACTTGCCAGCGGCACTGAGCGACGCCGCGGGGCGGACCGAGGA
TGGACGGACGGACGGACGGACGGGGGGATGGACTCTAGCCCCGCTCGTGGGAGCTCCCCGCTGTGCGCACAGCCGGAGC
AGAAGGTTGTTTCTCGAGGGAACTACTCTTAAGCGACTGATTGCAGTACGTTACTGTGTTGTGAATATGGAGGTGGCAC
TTAGTGTACAGACGTTCTGAGTGAGCCGCCCGGGCGCTCCTCCAGGCAGGACTGGGACGTGGTACGCGCTGGGTTTCCA
GTTGCGCTCGATGGACGCG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 2
stage 3
stage 3

Area Opaca

Epiblast

Primitive Streak

 
4-5
stage 4
stage 5

Early Endoderm

Head Process

Hensen's Node

Hypoblast

Notochord

Primitive Streak

 

Probe 3

GEISHA IdDkk 1.Abe.2006
 NCBIEnsembl
Gene Name Q8UUX3_CHICK
Gene Description Dkk-1 (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q8UUX3]
Ensembl Genome Map
contig view
CitationAbe Y, Chen W, Huang W, Nishino M, Li YP. CNBP regulates forebrain formation at organogenesis stage in chick embryos. Dev Biol. 2006 Jul 1;295(1):116-27. Epub 2006 Apr 19.
CopyrightReprinted from Developmental Biology, 295, Yoko Abea, Wei Chena, Wei Huangc, Mizuho Nishinod and Yi-Ping Li, CNBP regulates forebrain formation at organogenesis stage in chick embryos, 116-127, Copyright 2006, with permission from Elsevier. Copyright © 2006 Elsevier B.V. All rights reserved.
Complete Sequenceshow
ATGGCGCAACCGAGCCGTCGGGGGGCCCCGAGGGCGAGGGGCGGGGGGAGCCGCGCCCCTTTGATCTCCGCGCATCAAA
GGCAGAGCCTCGCCCGGCCCCGCTCCCCCCGCCGCGGCGCGGCCCCCCCGGCCGAGGTCAGTCGAGTGCACGGGGGGGC
TCCGACGGGGCGGGCTCTCTTCCAGCCCCCCCAAACTCCGCGGGGCCGGGGGTGCGGAGCGGCCCCTTCCTGCGGGTCT
GCGCTGGCGCCAGGAAGGGAGCGCGGCGGAGCTACCGCCGCCGTTGCGAAATCCCCTCCCTCGGGGGGGGGGAACAGCG
GCACAGCCCCCCGGGGCCCTTTGAAATCCCATCCCTCCTCCCCGAAGGGCGGGCGCAGGAGGCAGCCCCCCGGGTATAA
AGAGGCGGCGGCGGGCAGAGATTTGATTAAAAATAAGTCTGCCGCTGCCGCCCCCGCGCCCTTCGACGGTAGCAACAAG
GCGCCGCCGGCCGCCACCCGGCAGCCCTTCCCCTGCTCCGAGGACGAGGACTGCGGCCCCGACGAATTCTGCGGAGGGG
CGGCCCGCGGCGGCGGCCCCCCGCTCTGCCTCGCGTGCAGGAGACGCCGCAAGCGCTGCCTGCGCGACGCCATGTGCTG
CCCGGGCACGGCCTGCAGCAACGGGCTNTGCACGCCCCCCGAACCCCCGCCCGGAGCTCCCGAGCTGGACGAGCCCGGC
CCCGAGGCGCTGCCCCGACGGACGCCCGCGCCCGCCTGGCCGCCCGACGCCAAAGGTGAGGAGGGCGACTTCTGCCTGC
GCTCGTCGGACTGCGCGGCGGGGCTGTGCTGCGCCCGCCACTTCTGGTCCAAGATCTGCAAACCCGTGCTGCGCGAGGG
GCAGGTGTGCACCCGGCACCGCCGGAAAGGAGCCCACGGCCTCGAGATCTTCCAGCGCTGCCCCTGCGCCGAGGGCATG
GCGTGCCGCCCGCAGCGCGACCGCGGCGGTCCCGACGCCTCCCGCCTGCACACTTGCCAGCGGCACTGAGCGACGCCGC
GGGGCGGACCGAGGATGGACGGACGGACGGACGGACGGGGGGATGGACTCTAGCCCCGCTCGTGGGAGCTCCCCGCTGT
GCGCACAGCCGGAGCAGAAGGTTGTTTCTCGAGGGAACTACTCTTAAGCGACTGATTGCAGTACGTTACTGTGTTGTGA
ATATGGAGGTGGCACTTAGTGTACAGACGTTCTGAGTGAGCCGCCCGGGCGCTCCTCCAGGCAGGACTGGGACGTGGTA
CGCGCTGAGTTTCCAGCTGCGCTCGATGGACGCG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19
stage 19

Forebrain

Midbrain

Somites

Anatomy.

Probe 4

GEISHA IdDkk1.Chapman.2008
 NCBIEnsembl
Gene Name Q8UUX3_CHICK
Gene Description Dkk-1 (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q8UUX3]
Ensembl Genome Map
contig view
CommentsImages Provided by Susan Chapman
Complete Sequenceshow
CGACGAACGCCCGCGCCCGCCTGGCCGCCCGACGCCAAAGGTGAGGAGGGCGACTTCTGCCTGCGCTCGTCGGACTGCG
CGGCGGGGCTGTGCTGCGCCCGCCACTTCTGGTCCAAGATCTGCAAACCCGTGCTGCGCGAGGGGCAGGTGTGCACCCG
GCACCGCCGGAAAGGAGCCCACGGCCTCGAGATCTTCCAGCGCTGCCCCTGCGCCGAGGGCATGGCGTGCCGCCCGCAG
CGCGACCGCGGCGGTCCCGACGCCTCCCGCCTGCACACTTGCCAGCGGCACTGAGCGACGCCGCGGGGCGGACCGAGGA
TGGACGGACGGACGGACGGACGGGGGGATGGACTCTAGCCCCGCTCGTGGGAGCTCCCCGCTGTGCGCACAGCCGGAGC
AGAAGGTTGTTTCTCGAGGGAACTACTCTTAAGCGACTGATTGCAGTACGTTACTGTGTTGTGAATATGGAGGTGGCAC
TTAGTGTACAGACGTTCTGAGTGAGCCGCCCGGGCGCTCCTCCAGGCAGGACTGGGACGTGGTACGCGCTGGGTTTCCA
GTTGCGCTCGATGGACGCG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 1
stage 1
stage 1
stage 2
stage 3
stage 3
stage 3
stage 3

Area Opaca

Area Pellucida

Epiblast

Hensen's Node

Primitive Streak

Unlabeled

stage XIV

4-6
stage 4
stage 4
stage 4
stage 4
stage 4
stage 4
stage 4
stage 5
stage 5
stage 6
stage 6

Area Pellucida

Epiblast

Germinal Crescent

Head Process

Headfold

Hensen's Node

Neural Plate/Tube

Paraxial Mesoderm

Primitive Streak

 
7-12
stage 7
stage 7
stage 7
stage 7
stage 7
stage 7
stage 7
stage 8
stage 8
stage 9
stage 10
stage 10
stage 10
stage 10
stage 10
stage 11
stage 11

Forebrain

Head Mesenchyme

Head Process

Headfold

Hensen's Node

Hindbrain

Hypoblast

Midbrain

Neural Plate/Tube

Notochord

Paraxial Mesoderm

Primitive Streak

Somites

Spinal Cord

Tail

 
13-17
stage 17
stage 17
stage 17

Head Mesenchyme

Pharyngeal Arches and Clefts

Pineal Gland

Tail

 

Probe 5

GEISHA IdDKK1.Foley.2000
 NCBIEnsembl
Gene NameDKK1Q8UUX3_CHICK
AliasesDKK1, dickkopf homolog 1 (Xenopus laevis), Official 
Gene Descriptiondickkopf homolog 1 (Xenopus laevis)Dkk-1 (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q8UUX3]
Gene Ontologyshow
GO:0005576 extracellular region IEA
GO:0007275 multicellular organismal development IEA
GO:0030178 negative regulation of Wnt receptor signaling pathway IEA
NCBI Nucleotide HitXM_421563 show details
scoreevaluealignment lengthdescription
5600.0572PREDICTED: Gallus gallus dickkopf homolog 1 (Xenopus laevis) (DKK1), mRNA
Ensembl Genome Map
contig view
CitationFoley AC, Skromne I, Stern CD. Reconciling different models of forebrain induction and patterning: a dual role for the hypoblast. Development. 2000 Sep;127(17):3839-54.
CopyrightPrinted in Great Britain © The Company of Biologists Limited 2000
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_421563).
Complete Sequenceshow
ATGGCGCAACCGAGCCGTCGGGGGGCCCCGAGGGCGAGGGGCGGGGGGAGCCGCGCCCCTTTGATCTCCGCGCATCAAA
GGCAGAGCCTCGCCCGGCCCCGCTCCCCCCGCCGCGGCGCGGCCCCCCCGGCCGAGGTCAGTCGAGTGCACGGGGGGGC
TCCGACGGGGCGGGCTCTCTTCCAGCCCCCCCAAACTCCGCGGGGCCGGGGGTGCGGAGCGGCCCCTTCCTGCGGGTCT
GCGCTGGCGCCAGGAAGGGAGCGCGGCGGAGCTACCGCCGCCGTTGCGAAATCCCCTCCCTCGGGGGGGGGGAACAGCG
GCACAGCCCCCCGGGGCCCTTTGAAATCCCATCCCTCCTCCCCGAAGGGCGGGCGCAGGAGGCAGCCCCCCGGGTATAA
AGAGGCGGCGGCGGGCAGAGATTTGATTAAAAATAAGTCTGCCGCTGCCGCCCCCGCGCCCTTCGACGGTAGCAACAAG
GCGCCGCCGGCCGCCACCCGGCAGCCCTTCCCCTGCTCCGAGGACGAGGACTGCGGCCCCGACGAATTCTGCGGAGGGG
CGGCCCGCGGCGGCGGCCCCCCGCTCTGCCTCGCGTGCAGGAGACGCCGCAAGCGCTGCCTGCGCGACGCCATGTGCTG
CCCGGGCACGGCCTGCAGCAACGGGCTNTGCACGCCCCCCGAACCCCCGCCCGGAGCTCCCGAGCTGGACGAGCCCGGC
CCCGAGGCGCTGCCCCGACGGACGCCCGCGCCCGCCTGGCCGCCCGACGCCAAAGGTGAGGAGGGCGACTTCTGCCTGC
GCTCGTCGGACTGCGCGGCGGGGCTGTGCTGCGCCCGCCACTTCTGGTCCAAGATCTGCAAACCCGTGCTGCGCGAGGG
GCAGGTGTGCACCCGGCACCGCCGGAAAGGAGCCCACGGCCTCGAGATCTTCCAGCGCTGCCCCTGCGCCGAGGGCATG
GCGTGCCGCCCGCAGCGCGACCGCGGCGGTCCCGACGCCTCCCGCCTGCACACTTGCCAGCGGCACTGAGCGACGCCGC
GGGGCGGACCGAGGATGGACGGACGGACGGACGGACGGGGGGATGGACTCTAGCCCCGCTCGTGGGAGCTCCCCGCTGT
GCGCACAGCCGGAGCAGAAGGTTGTTTCTCGAGGGAACTACTCTTAAGCGACTGATTGCAGTACGTTACTGTGTTGTGA
ATATGGAGGTGGCACTTAGTGTACAGACGTTCTGAGTGAGCCGCCCGGGCGCTCCTCCAGGCAGGACTGGGACGTGGTA
CGCGCTGAGTTTCCAGCTGCGCTCGATGGACGCG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 1
stage 2

Hypoblast

Stage XII-XIII EG&K

4
stage 4
stage 4

Hypoblast

 

Probe 6

GEISHA IdDkk-1.Manisastry.2006
 NCBIEnsembl
Gene NameDKK1Q8UUX3_CHICK
AliasesDKK1, dickkopf homolog 1 (Xenopus laevis), Official 
Gene Descriptiondickkopf homolog 1 (Xenopus laevis)Dkk-1 (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q8UUX3]
Gene Ontologyshow
GO:0005576 extracellular region IEA
GO:0007275 multicellular organismal development IEA
GO:0030178 negative regulation of Wnt receptor signaling pathway IEA
NCBI Nucleotide HitXM_421563 show details
scoreevaluealignment lengthdescription
12950.01298PREDICTED: Gallus gallus dickkopf homolog 1 (Xenopus laevis) (DKK1), mRNA
Ensembl Genome Map
contig view
CitationManisastry SM, Han M, Linask KK. Early temporal-specific responses and differential sensitivity to lithium and Wnt-3A exposure during heart development. Dev Dyn. 2006 Aug;235(8):2160-74.
CopyrightCopyright © 2006 Wiley-Liss, Inc.
CommentsAuthors said: "The chick probe for Dkk-1 was provided by Dr. Susan C. Chapman (University of Utah, Salt Lake City, UT)." Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_421563).
Complete Sequenceshow
ATGGCGCAACCGAGCCGTCGGGGGGCCCCGAGGGCGAGGGGCGGGGGGAGCCGCGCCCCTTTGATCTCCGCGCATCAAA
GGCAGAGCCTCGCCCGGCCCCGCTCCCCCCGCCGCGGCGCGGCCCCCCCGGCCGAGGTCAGTCGAGTGCACGGGGGGGC
TCCGACGGGGCGGGCTCTCTTCCAGCCCCCCCAAACTCCGCGGGGCCGGGGGTGCGGAGCGGCCCCTTCCTGCGGGTCT
GCGCTGGCGCCAGGAAGGGAGCGCGGCGGAGCTACCGCCGCCGTTGCGAAATCCCCTCCCTCGGGGGGGGGGAACAGCG
GCACAGCCCCCCGGGGCCCTTTGAAATCCCATCCCTCCTCCCCGAAGGGCGGGCGCAGGAGGCAGCCCCCCGGGTATAA
AGAGGCGGCGGCGGGCAGAGATTTGATTAAAAATAAGTCTGCCGCTGCCGCCCCCGCGCCCTTCGACGGTAGCAACAAG
GCGCCGCCGGCCGCCACCCGGCAGCCCTTCCCCTGCTCCGAGGACGAGGACTGCGGCCCCGACGAATTCTGCGGAGGGG
CGGCCCGCGGCGGCGGCCCCCCGCTCTGCCTCGCGTGCAGGAGACGCCGCAAGCGCTGCCTGCGCGACGCCATGTGCTG
CCCGGGCACGGCCTGCAGCAACGGGCTNTGCACGCCCCCCGAACCCCCGCCCGGAGCTCCCGAGCTGGACGAGCCCGGC
CCCGAGGCGCTGCCCCGACGGACGCCCGCGCCCGCCTGGCCGCCCGACGCCAAAGGTGAGGAGGGCGACTTCTGCCTGC
GCTCGTCGGACTGCGCGGCGGGGCTGTGCTGCGCCCGCCACTTCTGGTCCAAGATCTGCAAACCCGTGCTGCGCGAGGG
GCAGGTGTGCACCCGGCACCGCCGGAAAGGAGCCCACGGCCTCGAGATCTTCCAGCGCTGCCCCTGCGCCGAGGGCATG
GCGTGCCGCCCGCAGCGCGACCGCGGCGGTCCCGACGCCTCCCGCCTGCACACTTGCCAGCGGCACTGAGCGACGCCGC
GGGGCGGACCGAGGATGGACGGACGGACGGACGGACGGGGGGATGGACTCTAGCCCCGCTCGTGGGAGCTCCCCGCTGT
GCGCACAGCCGGAGCAGAAGGTTGTTTCTCGAGGGAACTACTCTTAAGCGACTGATTGCAGTACGTTACTGTGTTGTGA
ATATGGAGGTGGCACTTAGTGTACAGACGTTCTGAGTGAGCCGCCCGGGCGCTCCTCCAGGCAGGACTGGGACGTGGTA
CGCGCTGAGTTTCCAGCTGCGCTCGATGGACGCG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4

Lateral Plate Mesoderm

Precardiac Region

neg. control shows some signal

7-11
stage 11

Unlabeled

 
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