GEISHA - A Chicken Embryo Gene Expression Database
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_

TBXT
T brachyury transcription factor

The human orthologue of this gene is associated
with the following human disease:
Gene
Official SymbolTBXT
Official Full NameT brachyury transcription factor
CGNC ID8730
also known asCH-T, T, T-box transcription factor T|brachyury protein|T, brachyury homolog|brachyury (T)|protein T, Brachyury, T protein
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Sequence Information
Genomic
RNANM_204940
PolypeptideNP_990271
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly39349FBgn0011723
Human6862ENSG00000164458MIM:182940MIM:601397
Mouse20997ENSMUSG00000062327All phenotypic alleles (40):Spontaneous(17) Chemically induced(5) Radiation induced(15) Targeted, other(2) Transgenic(1) MGI:98472
Xenopus493501, 399275, 432248478788
Zebrafish100004296, 30399ENSDARG00000039806, ENSDARG00000009905ZDB-GENE-081028-48, ZDB-GENE-980526-437ZFIN:ZDB-GENE-081028-48, ZFIN:ZDB-GENE-980526-437
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene395782
Ensembl GeneENSGALG00000011489
KEGGgga:395782

Entry 1

GEISHA IdBrachyuryData SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
CGAGCTCGGGCGGAGGCAGCCGGGCCCCGCCGGCGGCGCTCGGGGAGGGGGGGGGGGCTTCGGGGGCGGCCATGGGCTC
CCCGGAGGACGCGGGCAAGGCGCCGGCGTACCGAGTGGACCACCTGCTGAGCGCGGTGGAGAGCGAGCTGCAGGCGGGC
AGCGAGAAGGGAGACCCGACGGAGCGCGAGCTGCGCGTGGCGCTGGAGGACGGCGAGCTGTGNCTGCGCTTCAAGGAGC
TCACCAACGAGATGATCGTCACCAAGAACGGCAGGAGGATGTTCCCGGTGCTGAAGGTGAGCGTGTCGGGGCTGGACCC
CAACGCCATGTACTCCTTCCTGCTGGACTTCGTGGCGGCCGACGGGCACCGCTGGAAGTACGTCAACGGCGAGTGGGTG
CCGGGCGGCAAGCCGGAGCCGCAGGCGCCCAGCTGCGTCTACATCCACCCCGACTCGCCCAACTTCGGCGCCCACTGGA
TGAAGGCGCCCGTCTCCTTCAGCAAGGTCAAGCTCACCAACAAGCTCAACGGCGGCGGGCAGATCATGCTCAACTCCCT
GCACAAGTACGAGCCCCGCATCCACATCGTGCGGGTGGGCGGCCCGCAGCGGATGATCACCAGCCATTCCTTCCCCGAG
ACCCAGTTCACTGCCGTGACGGCGTACCAGAACGAGGAGATCACAGCTTTGAAAATTAAATACAACCCATTTGCGAAGG
CATTTCTTGACGCAAAGGAAAGAAATGATCACAAAGACATGATGGAGGAAGCGGGAGACAACCAGCAGTCTGGATACTC
GCAGTTAGGTAGTTGGCTTATTCCCGGGGCTGGGGCTCTGTGCCCACCTGCCAATCCTCACTCTCAGTTTGGAGCACCC
CTGTCTCTCTCCCCTGCTCACAGCTGTGAAAGGTACTCACCGCTGAGGAATCACCGTTCTGCCCCCTACCCCAATCCCT
ACACCCATAGAAACAACTCACCAACAGCTTACACTGATAACTCCTCTGCCTGCCTTCCCATGCTCCAGTCCCATGACAA
TTGGTCCTCCCTGGGAGTTCCCACACACACGACTATGCTGCCCATGAGCCACAGCACTGGCACAGCTACCAGCTCCAGT
CAGTACCCGAACTTATGGTCCGTGAGTAACAGCACCATCACCCCGGCGCCTCAGTCAAGCGGGATGTCCAACGGCCTGA
GCTCCCAGTTCCTGCGTGGCTCTCCGGTGCACTACACCGCTCTCCCACATCCCGTCACTGCCACCACCTCCACATCCCC
ACTGTACGATGGAGGAGCACCTGCAGACCTTCCTGACAGCCAGTACGATGCCTCTGCACACACTCGGTTGGCATCCATG
TGGACGCCCATCACCCCACCTTCCATGTAAACTCAGACCTCTACTTTAGAACAGACTTTTTTAGCTACTGAATTACTTT
AAATGCTTAATCCTCAAGGAAGAGAAAAAGGAGACGTGAAGGAAATTATAGATAAAGCATCTGCACTGCTTTGAGTAGA
GCATCCAAGTTATGTCTCTGATAGTGAACAGACCATCATTAACTTCATGCAGAGTTTACAAATCTGGTGAGCGTGCAAT
TCTGAGAGCAGACTGACTGCTTTTCATCTTTTTTGTTTTCTAGCTTGATAGGTCTAATTTTTAAGATTTTGACTTAGAT
TCCAAATTTCTCAGTGTTCTGATATATTTGGACCTCAAGTTTGGCATCTGGACAACTTTCTTGAGTAAGTTACTCCTGA
TTGGTTTTCTTTTTTTTTTTTTTTAAATGGCAAACCTAGGAATAGCCATATTACACTGTTATTAACCACCTAGGTAGAA
GCATTCTGAATTCTGCACAAGTGTAGCTGAGGATGGAAGTTTTTGGAAGATCACGTGCACTAATGCGTATTTGTCTCAC
AGATACGGTTGTGTTCTTAACTGTATGCTTGTTTCCTTGCTGCTGAATTACTGTTGAGACAATCTGCAAGAACTGTTTT
ACTCCTAATAAATTACAGTATTATCATTGGTCTAAATTGTTTTACCCCAGAGATTCCTTTTCGAGGTAAGTTTTGCTGT
TGATCACATTCAGACCCCTGTCAGCTTTGCCAAACGTCTTTATTTCAAACAGCCGGTGTCTTAATGTGAAGTCCTCTCC
AAAACCATTTCAACTCATTGAAAAACATCACGGTCTTTTATGATCTCTTGCTCAGGCCGTAAAGGGAGGGAATTCAATA
CCTGGAGAATCATTCTAATATATATATTTTTTTTCAATGTAATACTCTGTTGAATTGTATTTATTGTTTCTTAAGCTTG
CATCTTCCGTTCGTCTGCCACATTAAGGTATGTAAATAATCTGTCAATCTGCAGTGTATTTCTTTAGACAATGACGTGT
AGGATTTGTCACCCAATGGCGCATTGAACAACATGGGTGTCAGAAGTTAAATTATTGTGAGGGGGAAAGCTATAGTCCC
CGATAGCTGAAGGAAAACTGCAGATATACTAAGCTTTAAAATACATTGCTTGACTTGCTGTGAAGGCCAGGTCTTGATG
ATACACTGATAATAAGTACGATGACTTAGATTTCTAACGCAGACTAACTCATTGGCTCAAAGGGTACCCTTGGGCTTGT
CTGTTTCTCCCGCTACCTGGCAAGTTCATATCCTGAGCAAAATGGTTTGTTTTACATAAGCCATAGTGGATAACTTTTA
AAACGAAGTGCCTAATGTACTGAAGCAAAAATTCTAAATCAGGGAATTCCTTAAATAACTCTTCATTGTGTGCGCATGA
GTATGGTGGCAGCTTTAAGAGAAGAAGCAAATATTTGCACCATGTCAGTCTCGTTGTAACCTTATGGGCAGGTCCTGAC
CCCGAAGATTGTGTCAGGGTTTTTACCGCAGAATGATTTTGTGTGCAACTGCGGGATGCGGTCTCCGAGGTGCTCCATC
AAGAGATTGCACCAGCGGCAGATAGCTGTGCAACCCTGTTCTGTGTCAATAGTGTAAATATTGTTCTAAGCTCTCCTAT
TTTATTGTGAAAGGAAATTGTGTAAATGATGTAAGTGCATTATTATTTAGAATATTTTGTAGAAGATAGTGTTATTTCA
TTGTATTTTTTTTTTACTTGTACTTGGGAAGTATAATTTAAATTGG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
Early Mesoderm
Epiblast
Primitive Streak
 
4-6
stage 4
stage 4
stage 5
stage 6
stage 6
Early Mesoderm
Epiblast
Mesoderm, early
Notochord
Primitive Streak
 
7-12
stage 7
stage 7
stage 10
stage 11
Early Mesoderm
Head Process
Hensen's Node
Notochord
Primitive Streak
 
13-18
stage 13
stage 15
stage 18
stage 18
Hindbrain
Notochord
Paraxial Mesoderm
Primitive Streak
 
19-24
stage 20
stage 22
Hindbrain
Notochord
Tail
 
25
stage 25
Forebrain
Hindbrain
Notochord
Tail
 

Entry 2

GEISHA IdBrachyury.Mikawa.2004Data SourcePublication
Complete cDNA Template Probeshow
CGAGCTCGGGCGGAGGCAGCCGGGCCCCGCCGGCGGCGCTCGGGGAGGGGGGGGGGGCTTCGGGGGCGGCCATGGGCTC
CCCGGAGGACGCGGGCAAGGCGCCGGCGTACCGAGTGGACCACCTGCTGAGCGCGGTGGAGAGCGAGCTGCAGGCGGGC
AGCGAGAAGGGAGACCCGACGGAGCGCGAGCTGCGCGTGGCGCTGGAGGACGGCGAGCTGTGNCTGCGCTTCAAGGAGC
TCACCAACGAGATGATCGTCACCAAGAACGGCAGGAGGATGTTCCCGGTGCTGAAGGTGAGCGTGTCGGGGCTGGACCC
CAACGCCATGTACTCCTTCCTGCTGGACTTCGTGGCGGCCGACGGGCACCGCTGGAAGTACGTCAACGGCGAGTGGGTG
CCGGGCGGCAAGCCGGAGCCGCAGGCGCCCAGCTGCGTCTACATCCACCCCGACTCGCCCAACTTCGGCGCCCACTGGA
TGAAGGCGCCCGTCTCCTTCAGCAAGGTCAAGCTCACCAACAAGCTCAACGGCGGCGGGCAGATCATGCTCAACTCCCT
GCACAAGTACGAGCCCCGCATCCACATCGTGCGGGTGGGCGGCCCGCAGCGGATGATCACCAGCCATTCCTTCCCCGAG
ACCCAGTTCACTGCCGTGACGGCGTACCAGAACGAGGAGATCACAGCTTTGAAAATTAAATACAACCCATTTGCGAAGG
CATTTCTTGACGCAAAGGAAAGAAATGATCACAAAGACATGATGGAGGAAGCGGGAGACAACCAGCAGTCTGGATACTC
GCAGTTAGGTAGTTGGCTTATTCCCGGGGCTGGGGCTCTGTGCCCACCTGCCAATCCTCACTCTCAGTTTGGAGCACCC
CTGTCTCTCTCCCCTGCTCACAGCTGTGAAAGGTACTCACCGCTGAGGAATCACCGTTCTGCCCCCTACCCCAATCCCT
ACACCCATAGAAACAACTCACCAACAGCTTACACTGATAACTCCTCTGCCTGCCTTCCCATGCTCCAGTCCCATGACAA
TTGGTCCTCCCTGGGAGTTCCCACACACACGACTATGCTGCCCATGAGCCACAGCACTGGCACAGCTACCAGCTCCAGT
CAGTACCCGAACTTATGGTCCGTGAGTAACAGCACCATCACCCCGGCGCCTCAGTCAAGCGGGATGTCCAACGGCCTGA
GCTCCCAGTTCCTGCGTGGCTCTCCGGTGCACTACACCGCTCTCCCACATCCCGTCACTGCCACCACCTCCACATCCCC
ACTGTACGATGGAGGAGCACCTGCAGACCTTCCTGACAGCCAGTACGATGCCTCTGCACACACTCGGTTGGCATCCATG
TGGACGCCCATCACCCCACCTTCCATGTAAACTCAGACCTCTACTTTAGAACAGACTTTTTTAGCTACTGAATTACTTT
AAATGCTTAATCCTCAAGGAAGAGAAAAAGGAGACGTGAAGGAAATTATAGATAAAGCATCTGCACTGCTTTGAGTAGA
GCATCCAAGTTATGTCTCTGATAGTGAACAGACCATCATTAACTTCATGCAGAGTTTACAAATCTGGTGAGCGTGCAAT
TCTGAGAGCAGACTGACTGCTTTTCATCTTTTTTGTTTTCTAGCTTGATAGGTCTAATTTTTAAGATTTTGACTTAGAT
TCCAAATTTCTCAGTGTTCTGATATATTTGGACCTCAAGTTTGGCATCTGGACAACTTTCTTGAGTAAGTTACTCCTGA
TTGGTTTTCTTTTTTTTTTTTTTTAAATGGCAAACCTAGGAATAGCCATATTACACTGTTATTAACCACCTAGGTAGAA
GCATTCTGAATTCTGCACAAGTGTAGCTGAGGATGGAAGTTTTTGGAAGATCACGTGCACTAATGCGTATTTGTCTCAC
AGATACGGTTGTGTTCTTAACTGTATGCTTGTTTCCTTGCTGCTGAATTACTGTTGAGACAATCTGCAAGAACTGTTTT
ACTCCTAATAAATTACAGTATTATCATTGGTCTAAATTGTTTTACCCCAGAGATTCCTTTTCGAGGTAAGTTTTGCTGT
TGATCACATTCAGACCCCTGTCAGCTTTGCCAAACGTCTTTATTTCAAACAGCCGGTGTCTTAATGTGAAGTCCTCTCC
AAAACCATTTCAACTCATTGAAAAACATCACGGTCTTTTATGATCTCTTGCTCAGGCCGTAAAGGGAGGGAATTCAATA
CCTGGAGAATCATTCTAATATATATATTTTTTTTCAATGTAATACTCTGTTGAATTGTATTTATTGTTTCTTAAGCTTG
CATCTTCCGTTCGTCTGCCACATTAAGGTATGTAAATAATCTGTCAATCTGCAGTGTATTTCTTTAGACAATGACGTGT
AGGATTTGTCACCCAATGGCGCATTGAACAACATGGGTGTCAGAAGTTAAATTATTGTGAGGGGGAAAGCTATAGTCCC
CGATAGCTGAAGGAAAACTGCAGATATACTAAGCTTTAAAATACATTGCTTGACTTGCTGTGAAGGCCAGGTCTTGATG
ATACACTGATAATAAGTACGATGACTTAGATTTCTAACGCAGACTAACTCATTGGCTCAAAGGGTACCCTTGGGCTTGT
CTGTTTCTCCCGCTACCTGGCAAGTTCATATCCTGAGCAAAATGGTTTGTTTTACATAAGCCATAGTGGATAACTTTTA
AAACGAAGTGCCTAATGTACTGAAGCAAAAATTCTAAATCAGGGAATTCCTTAAATAACTCTTCATTGTGTGCGCATGA
GTATGGTGGCAGCTTTAAGAGAAGAAGCAAATATTTGCACCATGTCAGTCTCGTTGTAACCTTATGGGCAGGTCCTGAC
CCCGAAGATTGTGTCAGGGTTTTTACCGCAGAATGATTTTGTGTGCAACTGCGGGATGCGGTCTCCGAGGTGCTCCATC
AAGAGATTGCACCAGCGGCAGATAGCTGTGCAACCCTGTTCTGTGTCAATAGTGTAAATATTGTTCTAAGCTCTCCTAT
TTTATTGTGAAAGGAAATTGTGTAAATGATGTAAGTGCATTATTATTTAGAATATTTTGTAGAAGATAGTGTTATTTCA
TTGTATTTTTTTTTTACTTGTACTTGGGAAGTATAATTTAAATTGG
CitationMikawa, T, Poh, A, Kelly, K, Ishii, Y, Reese, D. Induction and Patterning of the Primitive Streak, an Organizing Center of Gastrulation in the Amniote. Dev Dyn. 2004 Mar;229(3):422-32.
CopyrightCopyright © 2004 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # U25176).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
X-XIV
stage XIII
Area Pellucida
Kohler's Sickle
marginal zone posterior to Koller's sickle
1-3
stage 1
stage 3
stage 3
stage 3
stage 3
Primitive Streak
Unlabeled Embryonic
 
4-6
stage 4
Primitive Streak
Brachyury (bluish purple)
Chordin (red)
7
stage 7
Primitive Streak
Brachyury (bluish purple)
Chordin (red)

Entry 3

GEISHA IdBrachyury.Hardy.2008Data SourcePublication
Complete cDNA Template Probeshow
CGAGCTCGGGCGGAGGCAGCCGGGCCCCGCCGGCGGCGCTCGGGGAGGGGGGGGGGGCTTCGGGGGCGGCCATGGGCTC
CCCGGAGGACGCGGGCAAGGCGCCGGCGTACCGAGTGGACCACCTGCTGAGCGCGGTGGAGAGCGAGCTGCAGGCGGGC
AGCGAGAAGGGAGACCCGACGGAGCGCGAGCTGCGCGTGGCGCTGGAGGACGGCGAGCTGTGNCTGCGCTTCAAGGAGC
TCACCAACGAGATGATCGTCACCAAGAACGGCAGGAGGATGTTCCCGGTGCTGAAGGTGAGCGTGTCGGGGCTGGACCC
CAACGCCATGTACTCCTTCCTGCTGGACTTCGTGGCGGCCGACGGGCACCGCTGGAAGTACGTCAACGGCGAGTGGGTG
CCGGGCGGCAAGCCGGAGCCGCAGGCGCCCAGCTGCGTCTACATCCACCCCGACTCGCCCAACTTCGGCGCCCACTGGA
TGAAGGCGCCCGTCTCCTTCAGCAAGGTCAAGCTCACCAACAAGCTCAACGGCGGCGGGCAGATCATGCTCAACTCCCT
GCACAAGTACGAGCCCCGCATCCACATCGTGCGGGTGGGCGGCCCGCAGCGGATGATCACCAGCCATTCCTTCCCCGAG
ACCCAGTTCACTGCCGTGACGGCGTACCAGAACGAGGAGATCACAGCTTTGAAAATTAAATACAACCCATTTGCGAAGG
CATTTCTTGACGCAAAGGAAAGAAATGATCACAAAGACATGATGGAGGAAGCGGGAGACAACCAGCAGTCTGGATACTC
GCAGTTAGGTAGTTGGCTTATTCCCGGGGCTGGGGCTCTGTGCCCACCTGCCAATCCTCACTCTCAGTTTGGAGCACCC
CTGTCTCTCTCCCCTGCTCACAGCTGTGAAAGGTACTCACCGCTGAGGAATCACCGTTCTGCCCCCTACCCCAATCCCT
ACACCCATAGAAACAACTCACCAACAGCTTACACTGATAACTCCTCTGCCTGCCTTCCCATGCTCCAGTCCCATGACAA
TTGGTCCTCCCTGGGAGTTCCCACACACACGACTATGCTGCCCATGAGCCACAGCACTGGCACAGCTACCAGCTCCAGT
CAGTACCCGAACTTATGGTCCGTGAGTAACAGCACCATCACCCCGGCGCCTCAGTCAAGCGGGATGTCCAACGGCCTGA
GCTCCCAGTTCCTGCGTGGCTCTCCGGTGCACTACACCGCTCTCCCACATCCCGTCACTGCCACCACCTCCACATCCCC
ACTGTACGATGGAGGAGCACCTGCAGACCTTCCTGACAGCCAGTACGATGCCTCTGCACACACTCGGTTGGCATCCATG
TGGACGCCCATCACCCCACCTTCCATGTAAACTCAGACCTCTACTTTAGAACAGACTTTTTTAGCTACTGAATTACTTT
AAATGCTTAATCCTCAAGGAAGAGAAAAAGGAGACGTGAAGGAAATTATAGATAAAGCATCTGCACTGCTTTGAGTAGA
GCATCCAAGTTATGTCTCTGATAGTGAACAGACCATCATTAACTTCATGCAGAGTTTACAAATCTGGTGAGCGTGCAAT
TCTGAGAGCAGACTGACTGCTTTTCATCTTTTTTGTTTTCTAGCTTGATAGGTCTAATTTTTAAGATTTTGACTTAGAT
TCCAAATTTCTCAGTGTTCTGATATATTTGGACCTCAAGTTTGGCATCTGGACAACTTTCTTGAGTAAGTTACTCCTGA
TTGGTTTTCTTTTTTTTTTTTTTTAAATGGCAAACCTAGGAATAGCCATATTACACTGTTATTAACCACCTAGGTAGAA
GCATTCTGAATTCTGCACAAGTGTAGCTGAGGATGGAAGTTTTTGGAAGATCACGTGCACTAATGCGTATTTGTCTCAC
AGATACGGTTGTGTTCTTAACTGTATGCTTGTTTCCTTGCTGCTGAATTACTGTTGAGACAATCTGCAAGAACTGTTTT
ACTCCTAATAAATTACAGTATTATCATTGGTCTAAATTGTTTTACCCCAGAGATTCCTTTTCGAGGTAAGTTTTGCTGT
TGATCACATTCAGACCCCTGTCAGCTTTGCCAAACGTCTTTATTTCAAACAGCCGGTGTCTTAATGTGAAGTCCTCTCC
AAAACCATTTCAACTCATTGAAAAACATCACGGTCTTTTATGATCTCTTGCTCAGGCCGTAAAGGGAGGGAATTCAATA
CCTGGAGAATCATTCTAATATATATATTTTTTTTCAATGTAATACTCTGTTGAATTGTATTTATTGTTTCTTAAGCTTG
CATCTTCCGTTCGTCTGCCACATTAAGGTATGTAAATAATCTGTCAATCTGCAGTGTATTTCTTTAGACAATGACGTGT
AGGATTTGTCACCCAATGGCGCATTGAACAACATGGGTGTCAGAAGTTAAATTATTGTGAGGGGGAAAGCTATAGTCCC
CGATAGCTGAAGGAAAACTGCAGATATACTAAGCTTTAAAATACATTGCTTGACTTGCTGTGAAGGCCAGGTCTTGATG
ATACACTGATAATAAGTACGATGACTTAGATTTCTAACGCAGACTAACTCATTGGCTCAAAGGGTACCCTTGGGCTTGT
CTGTTTCTCCCGCTACCTGGCAAGTTCATATCCTGAGCAAAATGGTTTGTTTTACATAAGCCATAGTGGATAACTTTTA
AAACGAAGTGCCTAATGTACTGAAGCAAAAATTCTAAATCAGGGAATTCCTTAAATAACTCTTCATTGTGTGCGCATGA
GTATGGTGGCAGCTTTAAGAGAAGAAGCAAATATTTGCACCATGTCAGTCTCGTTGTAACCTTATGGGCAGGTCCTGAC
CCCGAAGATTGTGTCAGGGTTTTTACCGCAGAATGATTTTGTGTGCAACTGCGGGATGCGGTCTCCGAGGTGCTCCATC
AAGAGATTGCACCAGCGGCAGATAGCTGTGCAACCCTGTTCTGTGTCAATAGTGTAAATATTGTTCTAAGCTCTCCTAT
TTTATTGTGAAAGGAAATTGTGTAAATGATGTAAGTGCATTATTATTTAGAATATTTTGTAGAAGATAGTGTTATTTCA
TTGTATTTTTTTTTTACTTGTACTTGGGAAGTATAATTTAAATTGG
CitationHardy KM, Garriock RJ, Yatskievych TA, D'Agostino SL, Antin PB, Krieg PA. Non-canonical Wnt signaling through Wnt5a/b and a novel Wnt11 gene, Wnt11b, regulates cell migration during avian gastrulation. Dev Biol. 2008 Aug 15;320(2):391-401. Epub 2008 May 29.
Copyright"Reprinted from Developmental Biology, 320, Hardy, KM, Garriock, RJ, Yatskievych, TA, D'Agostino, SL, Antin, PB, Krieg, PA. Non-canonical Wnt signaling through Wnt5a/b and a novel Wnt11 gene, Wnt11b, regulates cell migration during avian gastrulation., Pages No., Copyright (2008), with permission from Elsevier". Copyright © 2008 Elsevier B.V. All rights reserved.
CommentsAuthors said: The Brachyury (Accession # NM_204940) template was prepared by linearizing with HindIII and transcribing with T3 polymerase.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-8
stage 8
Early Mesoderm
Epiblast
Notochord
Primitive Streak
 

Entry 4

GEISHA IdBrachyury.Jaffredo.2005Data SourcePublication
Complete cDNA Template Probeshow
CGAGCTCGGGCGGAGGCAGCCGGGCCCCGCCGGCGGCGCTCGGGGAGGGGGGGGGGGCTTCGGGGGCGGCCATGGGCTC
CCCGGAGGACGCGGGCAAGGCGCCGGCGTACCGAGTGGACCACCTGCTGAGCGCGGTGGAGAGCGAGCTGCAGGCGGGC
AGCGAGAAGGGAGACCCGACGGAGCGCGAGCTGCGCGTGGCGCTGGAGGACGGCGAGCTGTGNCTGCGCTTCAAGGAGC
TCACCAACGAGATGATCGTCACCAAGAACGGCAGGAGGATGTTCCCGGTGCTGAAGGTGAGCGTGTCGGGGCTGGACCC
CAACGCCATGTACTCCTTCCTGCTGGACTTCGTGGCGGCCGACGGGCACCGCTGGAAGTACGTCAACGGCGAGTGGGTG
CCGGGCGGCAAGCCGGAGCCGCAGGCGCCCAGCTGCGTCTACATCCACCCCGACTCGCCCAACTTCGGCGCCCACTGGA
TGAAGGCGCCCGTCTCCTTCAGCAAGGTCAAGCTCACCAACAAGCTCAACGGCGGCGGGCAGATCATGCTCAACTCCCT
GCACAAGTACGAGCCCCGCATCCACATCGTGCGGGTGGGCGGCCCGCAGCGGATGATCACCAGCCATTCCTTCCCCGAG
ACCCAGTTCACTGCCGTGACGGCGTACCAGAACGAGGAGATCACAGCTTTGAAAATTAAATACAACCCATTTGCGAAGG
CATTTCTTGACGCAAAGGAAAGAAATGATCACAAAGACATGATGGAGGAAGCGGGAGACAACCAGCAGTCTGGATACTC
GCAGTTAGGTAGTTGGCTTATTCCCGGGGCTGGGGCTCTGTGCCCACCTGCCAATCCTCACTCTCAGTTTGGAGCACCC
CTGTCTCTCTCCCCTGCTCACAGCTGTGAAAGGTACTCACCGCTGAGGAATCACCGTTCTGCCCCCTACCCCAATCCCT
ACACCCATAGAAACAACTCACCAACAGCTTACACTGATAACTCCTCTGCCTGCCTTCCCATGCTCCAGTCCCATGACAA
TTGGTCCTCCCTGGGAGTTCCCACACACACGACTATGCTGCCCATGAGCCACAGCACTGGCACAGCTACCAGCTCCAGT
CAGTACCCGAACTTATGGTCCGTGAGTAACAGCACCATCACCCCGGCGCCTCAGTCAAGCGGGATGTCCAACGGCCTGA
GCTCCCAGTTCCTGCGTGGCTCTCCGGTGCACTACACCGCTCTCCCACATCCCGTCACTGCCACCACCTCCACATCCCC
ACTGTACGATGGAGGAGCACCTGCAGACCTTCCTGACAGCCAGTACGATGCCTCTGCACACACTCGGTTGGCATCCATG
TGGACGCCCATCACCCCACCTTCCATGTAAACTCAGACCTCTACTTTAGAACAGACTTTTTTAGCTACTGAATTACTTT
AAATGCTTAATCCTCAAGGAAGAGAAAAAGGAGACGTGAAGGAAATTATAGATAAAGCATCTGCACTGCTTTGAGTAGA
GCATCCAAGTTATGTCTCTGATAGTGAACAGACCATCATTAACTTCATGCAGAGTTTACAAATCTGGTGAGCGTGCAAT
TCTGAGAGCAGACTGACTGCTTTTCATCTTTTTTGTTTTCTAGCTTGATAGGTCTAATTTTTAAGATTTTGACTTAGAT
TCCAAATTTCTCAGTGTTCTGATATATTTGGACCTCAAGTTTGGCATCTGGACAACTTTCTTGAGTAAGTTACTCCTGA
TTGGTTTTCTTTTTTTTTTTTTTTAAATGGCAAACCTAGGAATAGCCATATTACACTGTTATTAACCACCTAGGTAGAA
GCATTCTGAATTCTGCACAAGTGTAGCTGAGGATGGAAGTTTTTGGAAGATCACGTGCACTAATGCGTATTTGTCTCAC
AGATACGGTTGTGTTCTTAACTGTATGCTTGTTTCCTTGCTGCTGAATTACTGTTGAGACAATCTGCAAGAACTGTTTT
ACTCCTAATAAATTACAGTATTATCATTGGTCTAAATTGTTTTACCCCAGAGATTCCTTTTCGAGGTAAGTTTTGCTGT
TGATCACATTCAGACCCCTGTCAGCTTTGCCAAACGTCTTTATTTCAAACAGCCGGTGTCTTAATGTGAAGTCCTCTCC
AAAACCATTTCAACTCATTGAAAAACATCACGGTCTTTTATGATCTCTTGCTCAGGCCGTAAAGGGAGGGAATTCAATA
CCTGGAGAATCATTCTAATATATATATTTTTTTTCAATGTAATACTCTGTTGAATTGTATTTATTGTTTCTTAAGCTTG
CATCTTCCGTTCGTCTGCCACATTAAGGTATGTAAATAATCTGTCAATCTGCAGTGTATTTCTTTAGACAATGACGTGT
AGGATTTGTCACCCAATGGCGCATTGAACAACATGGGTGTCAGAAGTTAAATTATTGTGAGGGGGAAAGCTATAGTCCC
CGATAGCTGAAGGAAAACTGCAGATATACTAAGCTTTAAAATACATTGCTTGACTTGCTGTGAAGGCCAGGTCTTGATG
ATACACTGATAATAAGTACGATGACTTAGATTTCTAACGCAGACTAACTCATTGGCTCAAAGGGTACCCTTGGGCTTGT
CTGTTTCTCCCGCTACCTGGCAAGTTCATATCCTGAGCAAAATGGTTTGTTTTACATAAGCCATAGTGGATAACTTTTA
AAACGAAGTGCCTAATGTACTGAAGCAAAAATTCTAAATCAGGGAATTCCTTAAATAACTCTTCATTGTGTGCGCATGA
GTATGGTGGCAGCTTTAAGAGAAGAAGCAAATATTTGCACCATGTCAGTCTCGTTGTAACCTTATGGGCAGGTCCTGAC
CCCGAAGATTGTGTCAGGGTTTTTACCGCAGAATGATTTTGTGTGCAACTGCGGGATGCGGTCTCCGAGGTGCTCCATC
AAGAGATTGCACCAGCGGCAGATAGCTGTGCAACCCTGTTCTGTGTCAATAGTGTAAATATTGTTCTAAGCTCTCCTAT
TTTATTGTGAAAGGAAATTGTGTAAATGATGTAAGTGCATTATTATTTAGAATATTTTGTAGAAGATAGTGTTATTTCA
TTGTATTTTTTTTTTACTTGTACTTGGGAAGTATAATTTAAATTGG
CitationJaffredo T, Bollerot K, Sugiyama D, Gautier R, Drevon C (2005). Tracing the hemangioblast during embryogenesis: developmental relationships between endothelial and hematopoietic cells. Int J Dev Biol. 2005;49(2-3):269-77.
Copyright"Reprinted from Int. J. Dev. Biol., 49,Jaffredo T, Bollerot K, Sugiyama D, Gautier R, Drevon C , Tracing the hemangioblast during embryogenesis: developmental relationships between endothelial and hematopoietic cells, 269-77, Copyright (2005), with permission from Copyright © 2005 UBC Press". All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204940).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 9
Primitive Streak
 
31-44
stage 44
 Comparison with other genes
negative control for blood island label

Entry 5

GEISHA IdT.Hardy.2011Data SourcePublication
Complete cDNA Template Probeshow
CGAGCTCGGGCGGAGGCAGCCGGGCCCCGCCGGCGGCGCTCGGGGAGGGGGGGGGGGCTTCGGGGGCGGCCATGGGCTC
CCCGGAGGACGCGGGCAAGGCGCCGGCGTACCGAGTGGACCACCTGCTGAGCGCGGTGGAGAGCGAGCTGCAGGCGGGC
AGCGAGAAGGGAGACCCGACGGAGCGCGAGCTGCGCGTGGCGCTGGAGGACGGCGAGCTGTGNCTGCGCTTCAAGGAGC
TCACCAACGAGATGATCGTCACCAAGAACGGCAGGAGGATGTTCCCGGTGCTGAAGGTGAGCGTGTCGGGGCTGGACCC
CAACGCCATGTACTCCTTCCTGCTGGACTTCGTGGCGGCCGACGGGCACCGCTGGAAGTACGTCAACGGCGAGTGGGTG
CCGGGCGGCAAGCCGGAGCCGCAGGCGCCCAGCTGCGTCTACATCCACCCCGACTCGCCCAACTTCGGCGCCCACTGGA
TGAAGGCGCCCGTCTCCTTCAGCAAGGTCAAGCTCACCAACAAGCTCAACGGCGGCGGGCAGATCATGCTCAACTCCCT
GCACAAGTACGAGCCCCGCATCCACATCGTGCGGGTGGGCGGCCCGCAGCGGATGATCACCAGCCATTCCTTCCCCGAG
ACCCAGTTCACTGCCGTGACGGCGTACCAGAACGAGGAGATCACAGCTTTGAAAATTAAATACAACCCATTTGCGAAGG
CATTTCTTGACGCAAAGGAAAGAAATGATCACAAAGACATGATGGAGGAAGCGGGAGACAACCAGCAGTCTGGATACTC
GCAGTTAGGTAGTTGGCTTATTCCCGGGGCTGGGGCTCTGTGCCCACCTGCCAATCCTCACTCTCAGTTTGGAGCACCC
CTGTCTCTCTCCCCTGCTCACAGCTGTGAAAGGTACTCACCGCTGAGGAATCACCGTTCTGCCCCCTACCCCAATCCCT
ACACCCATAGAAACAACTCACCAACAGCTTACACTGATAACTCCTCTGCCTGCCTTCCCATGCTCCAGTCCCATGACAA
TTGGTCCTCCCTGGGAGTTCCCACACACACGACTATGCTGCCCATGAGCCACAGCACTGGCACAGCTACCAGCTCCAGT
CAGTACCCGAACTTATGGTCCGTGAGTAACAGCACCATCACCCCGGCGCCTCAGTCAAGCGGGATGTCCAACGGCCTGA
GCTCCCAGTTCCTGCGTGGCTCTCCGGTGCACTACACCGCTCTCCCACATCCCGTCACTGCCACCACCTCCACATCCCC
ACTGTACGATGGAGGAGCACCTGCAGACCTTCCTGACAGCCAGTACGATGCCTCTGCACACACTCGGTTGGCATCCATG
TGGACGCCCATCACCCCACCTTCCATGTAAACTCAGACCTCTACTTTAGAACAGACTTTTTTAGCTACTGAATTACTTT
AAATGCTTAATCCTCAAGGAAGAGAAAAAGGAGACGTGAAGGAAATTATAGATAAAGCATCTGCACTGCTTTGAGTAGA
GCATCCAAGTTATGTCTCTGATAGTGAACAGACCATCATTAACTTCATGCAGAGTTTACAAATCTGGTGAGCGTGCAAT
TCTGAGAGCAGACTGACTGCTTTTCATCTTTTTTGTTTTCTAGCTTGATAGGTCTAATTTTTAAGATTTTGACTTAGAT
TCCAAATTTCTCAGTGTTCTGATATATTTGGACCTCAAGTTTGGCATCTGGACAACTTTCTTGAGTAAGTTACTCCTGA
TTGGTTTTCTTTTTTTTTTTTTTTAAATGGCAAACCTAGGAATAGCCATATTACACTGTTATTAACCACCTAGGTAGAA
GCATTCTGAATTCTGCACAAGTGTAGCTGAGGATGGAAGTTTTTGGAAGATCACGTGCACTAATGCGTATTTGTCTCAC
AGATACGGTTGTGTTCTTAACTGTATGCTTGTTTCCTTGCTGCTGAATTACTGTTGAGACAATCTGCAAGAACTGTTTT
ACTCCTAATAAATTACAGTATTATCATTGGTCTAAATTGTTTTACCCCAGAGATTCCTTTTCGAGGTAAGTTTTGCTGT
TGATCACATTCAGACCCCTGTCAGCTTTGCCAAACGTCTTTATTTCAAACAGCCGGTGTCTTAATGTGAAGTCCTCTCC
AAAACCATTTCAACTCATTGAAAAACATCACGGTCTTTTATGATCTCTTGCTCAGGCCGTAAAGGGAGGGAATTCAATA
CCTGGAGAATCATTCTAATATATATATTTTTTTTCAATGTAATACTCTGTTGAATTGTATTTATTGTTTCTTAAGCTTG
CATCTTCCGTTCGTCTGCCACATTAAGGTATGTAAATAATCTGTCAATCTGCAGTGTATTTCTTTAGACAATGACGTGT
AGGATTTGTCACCCAATGGCGCATTGAACAACATGGGTGTCAGAAGTTAAATTATTGTGAGGGGGAAAGCTATAGTCCC
CGATAGCTGAAGGAAAACTGCAGATATACTAAGCTTTAAAATACATTGCTTGACTTGCTGTGAAGGCCAGGTCTTGATG
ATACACTGATAATAAGTACGATGACTTAGATTTCTAACGCAGACTAACTCATTGGCTCAAAGGGTACCCTTGGGCTTGT
CTGTTTCTCCCGCTACCTGGCAAGTTCATATCCTGAGCAAAATGGTTTGTTTTACATAAGCCATAGTGGATAACTTTTA
AAACGAAGTGCCTAATGTACTGAAGCAAAAATTCTAAATCAGGGAATTCCTTAAATAACTCTTCATTGTGTGCGCATGA
GTATGGTGGCAGCTTTAAGAGAAGAAGCAAATATTTGCACCATGTCAGTCTCGTTGTAACCTTATGGGCAGGTCCTGAC
CCCGAAGATTGTGTCAGGGTTTTTACCGCAGAATGATTTTGTGTGCAACTGCGGGATGCGGTCTCCGAGGTGCTCCATC
AAGAGATTGCACCAGCGGCAGATAGCTGTGCAACCCTGTTCTGTGTCAATAGTGTAAATATTGTTCTAAGCTCTCCTAT
TTTATTGTGAAAGGAAATTGTGTAAATGATGTAAGTGCATTATTATTTAGAATATTTTGTAGAAGATAGTGTTATTTCA
TTGTATTTTTTTTTTACTTGTACTTGGGAAGTATAATTTAAATTGG
CitationHardy KM, Yatskievych TA, Konieczka J, Bobbs AS, Antin PB. FGF signalling through RAS/MAPK and PI3K pathways regulates cell movement and gene expression in the chicken primitive streak without affecting E-cadherin expression. BMC Dev Biol. 2011 Mar 21;11:20.
Copyright© 2011 Hardy et al; licensee BioMed Central Ltd.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204940).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4
stage 4
stage 4
stage 4
stage 4
stage 4
Early Mesoderm
Epiblast
Head Process
Primitive Streak
lateral and medial mesoderm; lateral and preingression epiblast

Entry 6

GEISHA IdBRA.Alev.2010Data SourcePublication
Complete cDNA Template Probeshow
CGAGCTCGGGCGGAGGCAGCCGGGCCCCGCCGGCGGCGCTCGGGGAGGGGGGGGGGGCTTCGGGGGCGGCCATGGGCTC
CCCGGAGGACGCGGGCAAGGCGCCGGCGTACCGAGTGGACCACCTGCTGAGCGCGGTGGAGAGCGAGCTGCAGGCGGGC
AGCGAGAAGGGAGACCCGACGGAGCGCGAGCTGCGCGTGGCGCTGGAGGACGGCGAGCTGTGNCTGCGCTTCAAGGAGC
TCACCAACGAGATGATCGTCACCAAGAACGGCAGGAGGATGTTCCCGGTGCTGAAGGTGAGCGTGTCGGGGCTGGACCC
CAACGCCATGTACTCCTTCCTGCTGGACTTCGTGGCGGCCGACGGGCACCGCTGGAAGTACGTCAACGGCGAGTGGGTG
CCGGGCGGCAAGCCGGAGCCGCAGGCGCCCAGCTGCGTCTACATCCACCCCGACTCGCCCAACTTCGGCGCCCACTGGA
TGAAGGCGCCCGTCTCCTTCAGCAAGGTCAAGCTCACCAACAAGCTCAACGGCGGCGGGCAGATCATGCTCAACTCCCT
GCACAAGTACGAGCCCCGCATCCACATCGTGCGGGTGGGCGGCCCGCAGCGGATGATCACCAGCCATTCCTTCCCCGAG
ACCCAGTTCACTGCCGTGACGGCGTACCAGAACGAGGAGATCACAGCTTTGAAAATTAAATACAACCCATTTGCGAAGG
CATTTCTTGACGCAAAGGAAAGAAATGATCACAAAGACATGATGGAGGAAGCGGGAGACAACCAGCAGTCTGGATACTC
GCAGTTAGGTAGTTGGCTTATTCCCGGGGCTGGGGCTCTGTGCCCACCTGCCAATCCTCACTCTCAGTTTGGAGCACCC
CTGTCTCTCTCCCCTGCTCACAGCTGTGAAAGGTACTCACCGCTGAGGAATCACCGTTCTGCCCCCTACCCCAATCCCT
ACACCCATAGAAACAACTCACCAACAGCTTACACTGATAACTCCTCTGCCTGCCTTCCCATGCTCCAGTCCCATGACAA
TTGGTCCTCCCTGGGAGTTCCCACACACACGACTATGCTGCCCATGAGCCACAGCACTGGCACAGCTACCAGCTCCAGT
CAGTACCCGAACTTATGGTCCGTGAGTAACAGCACCATCACCCCGGCGCCTCAGTCAAGCGGGATGTCCAACGGCCTGA
GCTCCCAGTTCCTGCGTGGCTCTCCGGTGCACTACACCGCTCTCCCACATCCCGTCACTGCCACCACCTCCACATCCCC
ACTGTACGATGGAGGAGCACCTGCAGACCTTCCTGACAGCCAGTACGATGCCTCTGCACACACTCGGTTGGCATCCATG
TGGACGCCCATCACCCCACCTTCCATGTAAACTCAGACCTCTACTTTAGAACAGACTTTTTTAGCTACTGAATTACTTT
AAATGCTTAATCCTCAAGGAAGAGAAAAAGGAGACGTGAAGGAAATTATAGATAAAGCATCTGCACTGCTTTGAGTAGA
GCATCCAAGTTATGTCTCTGATAGTGAACAGACCATCATTAACTTCATGCAGAGTTTACAAATCTGGTGAGCGTGCAAT
TCTGAGAGCAGACTGACTGCTTTTCATCTTTTTTGTTTTCTAGCTTGATAGGTCTAATTTTTAAGATTTTGACTTAGAT
TCCAAATTTCTCAGTGTTCTGATATATTTGGACCTCAAGTTTGGCATCTGGACAACTTTCTTGAGTAAGTTACTCCTGA
TTGGTTTTCTTTTTTTTTTTTTTTAAATGGCAAACCTAGGAATAGCCATATTACACTGTTATTAACCACCTAGGTAGAA
GCATTCTGAATTCTGCACAAGTGTAGCTGAGGATGGAAGTTTTTGGAAGATCACGTGCACTAATGCGTATTTGTCTCAC
AGATACGGTTGTGTTCTTAACTGTATGCTTGTTTCCTTGCTGCTGAATTACTGTTGAGACAATCTGCAAGAACTGTTTT
ACTCCTAATAAATTACAGTATTATCATTGGTCTAAATTGTTTTACCCCAGAGATTCCTTTTCGAGGTAAGTTTTGCTGT
TGATCACATTCAGACCCCTGTCAGCTTTGCCAAACGTCTTTATTTCAAACAGCCGGTGTCTTAATGTGAAGTCCTCTCC
AAAACCATTTCAACTCATTGAAAAACATCACGGTCTTTTATGATCTCTTGCTCAGGCCGTAAAGGGAGGGAATTCAATA
CCTGGAGAATCATTCTAATATATATATTTTTTTTCAATGTAATACTCTGTTGAATTGTATTTATTGTTTCTTAAGCTTG
CATCTTCCGTTCGTCTGCCACATTAAGGTATGTAAATAATCTGTCAATCTGCAGTGTATTTCTTTAGACAATGACGTGT
AGGATTTGTCACCCAATGGCGCATTGAACAACATGGGTGTCAGAAGTTAAATTATTGTGAGGGGGAAAGCTATAGTCCC
CGATAGCTGAAGGAAAACTGCAGATATACTAAGCTTTAAAATACATTGCTTGACTTGCTGTGAAGGCCAGGTCTTGATG
ATACACTGATAATAAGTACGATGACTTAGATTTCTAACGCAGACTAACTCATTGGCTCAAAGGGTACCCTTGGGCTTGT
CTGTTTCTCCCGCTACCTGGCAAGTTCATATCCTGAGCAAAATGGTTTGTTTTACATAAGCCATAGTGGATAACTTTTA
AAACGAAGTGCCTAATGTACTGAAGCAAAAATTCTAAATCAGGGAATTCCTTAAATAACTCTTCATTGTGTGCGCATGA
GTATGGTGGCAGCTTTAAGAGAAGAAGCAAATATTTGCACCATGTCAGTCTCGTTGTAACCTTATGGGCAGGTCCTGAC
CCCGAAGATTGTGTCAGGGTTTTTACCGCAGAATGATTTTGTGTGCAACTGCGGGATGCGGTCTCCGAGGTGCTCCATC
AAGAGATTGCACCAGCGGCAGATAGCTGTGCAACCCTGTTCTGTGTCAATAGTGTAAATATTGTTCTAAGCTCTCCTAT
TTTATTGTGAAAGGAAATTGTGTAAATGATGTAAGTGCATTATTATTTAGAATATTTTGTAGAAGATAGTGTTATTTCA
TTGTATTTTTTTTTTACTTGTACTTGGGAAGTATAATTTAAATTGG
CitationAlev C, Wu Y, Kasukawa T, Jakt LM, Ueda HR, Sheng G. Transcriptomic landscape of the primitive streak. Development. 2010 Sep 1;137(17):2863-74. Epub 2010 Jul 28.
CopyrightPublished by The Company of Biologists 2010. This material is protected by a copyright retained by the authors. Permission granted by Dr. G Sheng.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204940.1)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
stage 3
Hensen's Node
Primitive Streak
 

Entry 7

GEISHA IdBRACHYURY.Stuhlmiller.2012Data SourcePublication
Complete cDNA Template Probeshow
GAAGGCATTTCTTGACGCAAAGGAAAGAAATGATCACAAAGACATGATGGAGGAAGCGGGAGACAACCAGCAGTCTGGA
TACTCGCAGTTAGGTAGTTGGCTTATTCCCGGGGCTGGGGCTCTGTGCCCACCTGCCAATCCTCACTCTCAGTTTGGAG
CACCCCTGTCTCTCTCCCCTGCTCACAGCTGTGAAAGGTACTCACCGCTGAGGAATCACCGTTCTGCCCCCTACCCCAA
TCCCTACACCCATAGAAACAACTCACCAACAGCTTACACTGATAACTCCTCTGCCTGCCTTCCCATGCTCCAGTCCCAT
GACAATTGGTCCTCCCTGGGAGTTCCCACACACACGACTATGCTGCCCATGAGCCACAGCACTGGCACAGCTACCAGCT
CCAGTCAGTACCCGAACTTATGGTCCGTGAGTAACAGCA
CitationStuhlmiller TJ, García-Castro MI. FGF/MAPK signaling is required in the gastrula epiblast for avian neural crest induction. Development. 2012 Jan;139(2):289-300.
Copyright© 2012. Published by The Company of Biologists Ltd
CommentsThe sequence below was obtained from NCBI (acc # NM_204940 - Showing 433 bp region from base 707 to 1139) using the information provided in the publication as described in Stuhlmiller et al.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 5
stage 5
Primitive Streak
control embryo
7
stage 7
Head Process
Hensen's Node
Notochord
Primitive Streak
 

Entry 8

GEISHA IdBRACHYURY.Patwardhan.2004Data SourcePublication
Complete cDNA Template Probeshow
CGAGCTCGGGCGGAGGCAGCCGGGCCCCGCCGGCGGCGCTCGGGGAGGGGGGGGGGGCTTCGGGGGCGGCCATGGGCTC
CCCGGAGGACGCGGGCAAGGCGCCGGCGTACCGAGTGGACCACCTGCTGAGCGCGGTGGAGAGCGAGCTGCAGGCGGGC
AGCGAGAAGGGAGACCCGACGGAGCGCGAGCTGCGCGTGGCGCTGGAGGACGGCGAGCTGTGNCTGCGCTTCAAGGAGC
TCACCAACGAGATGATCGTCACCAAGAACGGCAGGAGGATGTTCCCGGTGCTGAAGGTGAGCGTGTCGGGGCTGGACCC
CAACGCCATGTACTCCTTCCTGCTGGACTTCGTGGCGGCCGACGGGCACCGCTGGAAGTACGTCAACGGCGAGTGGGTG
CCGGGCGGCAAGCCGGAGCCGCAGGCGCCCAGCTGCGTCTACATCCACCCCGACTCGCCCAACTTCGGCGCCCACTGGA
TGAAGGCGCCCGTCTCCTTCAGCAAGGTCAAGCTCACCAACAAGCTCAACGGCGGCGGGCAGATCATGCTCAACTCCCT
GCACAAGTACGAGCCCCGCATCCACATCGTGCGGGTGGGCGGCCCGCAGCGGATGATCACCAGCCATTCCTTCCCCGAG
ACCCAGTTCACTGCCGTGACGGCGTACCAGAACGAGGAGATCACAGCTTTGAAAATTAAATACAACCCATTTGCGAAGG
CATTTCTTGACGCAAAGGAAAGAAATGATCACAAAGACATGATGGAGGAAGCGGGAGACAACCAGCAGTCTGGATACTC
GCAGTTAGGTAGTTGGCTTATTCCCGGGGCTGGGGCTCTGTGCCCACCTGCCAATCCTCACTCTCAGTTTGGAGCACCC
CTGTCTCTCTCCCCTGCTCACAGCTGTGAAAGGTACTCACCGCTGAGGAATCACCGTTCTGCCCCCTACCCCAATCCCT
ACACCCATAGAAACAACTCACCAACAGCTTACACTGATAACTCCTCTGCCTGCCTTCCCATGCTCCAGTCCCATGACAA
TTGGTCCTCCCTGGGAGTTCCCACACACACGACTATGCTGCCCATGAGCCACAGCACTGGCACAGCTACCAGCTCCAGT
CAGTACCCGAACTTATGGTCCGTGAGTAACAGCACCATCACCCCGGCGCCTCAGTCAAGCGGGATGTCCAACGGCCTGA
GCTCCCAGTTCCTGCGTGGCTCTCCGGTGCACTACACCGCTCTCCCACATCCCGTCACTGCCACCACCTCCACATCCCC
ACTGTACGATGGAGGAGCACCTGCAGACCTTCCTGACAGCCAGTACGATGCCTCTGCACACACTCGGTTGGCATCCATG
TGGACGCCCATCACCCCACCTTCCATGTAAACTCAGACCTCTACTTTAGAACAGACTTTTTTAGCTACTGAATTACTTT
AAATGCTTAATCCTCAAGGAAGAGAAAAAGGAGACGTGAAGGAAATTATAGATAAAGCATCTGCACTGCTTTGAGTAGA
GCATCCAAGTTATGTCTCTGATAGTGAACAGACCATCATTAACTTCATGCAGAGTTTACAAATCTGGTGAGCGTGCAAT
TCTGAGAGCAGACTGACTGCTTTTCATCTTTTTTGTTTTCTAGCTTGATAGGTCTAATTTTTAAGATTTTGACTTAGAT
TCCAAATTTCTCAGTGTTCTGATATATTTGGACCTCAAGTTTGGCATCTGGACAACTTTCTTGAGTAAGTTACTCCTGA
TTGGTTTTCTTTTTTTTTTTTTTTAAATGGCAAACCTAGGAATAGCCATATTACACTGTTATTAACCACCTAGGTAGAA
GCATTCTGAATTCTGCACAAGTGTAGCTGAGGATGGAAGTTTTTGGAAGATCACGTGCACTAATGCGTATTTGTCTCAC
AGATACGGTTGTGTTCTTAACTGTATGCTTGTTTCCTTGCTGCTGAATTACTGTTGAGACAATCTGCAAGAACTGTTTT
ACTCCTAATAAATTACAGTATTATCATTGGTCTAAATTGTTTTACCCCAGAGATTCCTTTTCGAGGTAAGTTTTGCTGT
TGATCACATTCAGACCCCTGTCAGCTTTGCCAAACGTCTTTATTTCAAACAGCCGGTGTCTTAATGTGAAGTCCTCTCC
AAAACCATTTCAACTCATTGAAAAACATCACGGTCTTTTATGATCTCTTGCTCAGGCCGTAAAGGGAGGGAATTCAATA
CCTGGAGAATCATTCTAATATATATATTTTTTTTCAATGTAATACTCTGTTGAATTGTATTTATTGTTTCTTAAGCTTG
CATCTTCCGTTCGTCTGCCACATTAAGGTATGTAAATAATCTGTCAATCTGCAGTGTATTTCTTTAGACAATGACGTGT
AGGATTTGTCACCCAATGGCGCATTGAACAACATGGGTGTCAGAAGTTAAATTATTGTGAGGGGGAAAGCTATAGTCCC
CGATAGCTGAAGGAAAACTGCAGATATACTAAGCTTTAAAATACATTGCTTGACTTGCTGTGAAGGCCAGGTCTTGATG
ATACACTGATAATAAGTACGATGACTTAGATTTCTAACGCAGACTAACTCATTGGCTCAAAGGGTACCCTTGGGCTTGT
CTGTTTCTCCCGCTACCTGGCAAGTTCATATCCTGAGCAAAATGGTTTGTTTTACATAAGCCATAGTGGATAACTTTTA
AAACGAAGTGCCTAATGTACTGAAGCAAAAATTCTAAATCAGGGAATTCCTTAAATAACTCTTCATTGTGTGCGCATGA
GTATGGTGGCAGCTTTAAGAGAAGAAGCAAATATTTGCACCATGTCAGTCTCGTTGTAACCTTATGGGCAGGTCCTGAC
CCCGAAGATTGTGTCAGGGTTTTTACCGCAGAATGATTTTGTGTGCAACTGCGGGATGCGGTCTCCGAGGTGCTCCATC
AAGAGATTGCACCAGCGGCAGATAGCTGTGCAACCCTGTTCTGTGTCAATAGTGTAAATATTGTTCTAAGCTCTCCTAT
TTTATTGTGAAAGGAAATTGTGTAAATGATGTAAGTGCATTATTATTTAGAATATTTTGTAGAAGATAGTGTTATTTCA
TTGTATTTTTTTTTTACTTGTACTTGGGAAGTATAATTTAAATTGG
CitationPatwardhan V, Gokhale M, Ghaskadbi S. Acceleration of early chick embryo morphogenesis by insulin is associated with altered expression of embryonic g enes. Int J Dev Biol. 2004 Jun;48(4):319-26.
Copyright© UBC Press
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (acc # NM_204940.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4
stage 4
stage 4
Primitive Streak
 

Entry 9

GEISHA IdBRA.Acloque.2011Data SourcePublication
Complete cDNA Template Probeshow
CGAGCTCGGGCGGAGGCAGCCGGGCCCCGCCGGCGGCGCTCGGGGAGGGGGGGGGGGCTTCGGGGGCGGCCATGGGCTC
CCCGGAGGACGCGGGCAAGGCGCCGGCGTACCGAGTGGACCACCTGCTGAGCGCGGTGGAGAGCGAGCTGCAGGCGGGC
AGCGAGAAGGGAGACCCGACGGAGCGCGAGCTGCGCGTGGCGCTGGAGGACGGCGAGCTGTGNCTGCGCTTCAAGGAGC
TCACCAACGAGATGATCGTCACCAAGAACGGCAGGAGGATGTTCCCGGTGCTGAAGGTGAGCGTGTCGGGGCTGGACCC
CAACGCCATGTACTCCTTCCTGCTGGACTTCGTGGCGGCCGACGGGCACCGCTGGAAGTACGTCAACGGCGAGTGGGTG
CCGGGCGGCAAGCCGGAGCCGCAGGCGCCCAGCTGCGTCTACATCCACCCCGACTCGCCCAACTTCGGCGCCCACTGGA
TGAAGGCGCCCGTCTCCTTCAGCAAGGTCAAGCTCACCAACAAGCTCAACGGCGGCGGGCAGATCATGCTCAACTCCCT
GCACAAGTACGAGCCCCGCATCCACATCGTGCGGGTGGGCGGCCCGCAGCGGATGATCACCAGCCATTCCTTCCCCGAG
ACCCAGTTCACTGCCGTGACGGCGTACCAGAACGAGGAGATCACAGCTTTGAAAATTAAATACAACCCATTTGCGAAGG
CATTTCTTGACGCAAAGGAAAGAAATGATCACAAAGACATGATGGAGGAAGCGGGAGACAACCAGCAGTCTGGATACTC
GCAGTTAGGTAGTTGGCTTATTCCCGGGGCTGGGGCTCTGTGCCCACCTGCCAATCCTCACTCTCAGTTTGGAGCACCC
CTGTCTCTCTCCCCTGCTCACAGCTGTGAAAGGTACTCACCGCTGAGGAATCACCGTTCTGCCCCCTACCCCAATCCCT
ACACCCATAGAAACAACTCACCAACAGCTTACACTGATAACTCCTCTGCCTGCCTTCCCATGCTCCAGTCCCATGACAA
TTGGTCCTCCCTGGGAGTTCCCACACACACGACTATGCTGCCCATGAGCCACAGCACTGGCACAGCTACCAGCTCCAGT
CAGTACCCGAACTTATGGTCCGTGAGTAACAGCACCATCACCCCGGCGCCTCAGTCAAGCGGGATGTCCAACGGCCTGA
GCTCCCAGTTCCTGCGTGGCTCTCCGGTGCACTACACCGCTCTCCCACATCCCGTCACTGCCACCACCTCCACATCCCC
ACTGTACGATGGAGGAGCACCTGCAGACCTTCCTGACAGCCAGTACGATGCCTCTGCACACACTCGGTTGGCATCCATG
TGGACGCCCATCACCCCACCTTCCATGTAAACTCAGACCTCTACTTTAGAACAGACTTTTTTAGCTACTGAATTACTTT
AAATGCTTAATCCTCAAGGAAGAGAAAAAGGAGACGTGAAGGAAATTATAGATAAAGCATCTGCACTGCTTTGAGTAGA
GCATCCAAGTTATGTCTCTGATAGTGAACAGACCATCATTAACTTCATGCAGAGTTTACAAATCTGGTGAGCGTGCAAT
TCTGAGAGCAGACTGACTGCTTTTCATCTTTTTTGTTTTCTAGCTTGATAGGTCTAATTTTTAAGATTTTGACTTAGAT
TCCAAATTTCTCAGTGTTCTGATATATTTGGACCTCAAGTTTGGCATCTGGACAACTTTCTTGAGTAAGTTACTCCTGA
TTGGTTTTCTTTTTTTTTTTTTTTAAATGGCAAACCTAGGAATAGCCATATTACACTGTTATTAACCACCTAGGTAGAA
GCATTCTGAATTCTGCACAAGTGTAGCTGAGGATGGAAGTTTTTGGAAGATCACGTGCACTAATGCGTATTTGTCTCAC
AGATACGGTTGTGTTCTTAACTGTATGCTTGTTTCCTTGCTGCTGAATTACTGTTGAGACAATCTGCAAGAACTGTTTT
ACTCCTAATAAATTACAGTATTATCATTGGTCTAAATTGTTTTACCCCAGAGATTCCTTTTCGAGGTAAGTTTTGCTGT
TGATCACATTCAGACCCCTGTCAGCTTTGCCAAACGTCTTTATTTCAAACAGCCGGTGTCTTAATGTGAAGTCCTCTCC
AAAACCATTTCAACTCATTGAAAAACATCACGGTCTTTTATGATCTCTTGCTCAGGCCGTAAAGGGAGGGAATTCAATA
CCTGGAGAATCATTCTAATATATATATTTTTTTTCAATGTAATACTCTGTTGAATTGTATTTATTGTTTCTTAAGCTTG
CATCTTCCGTTCGTCTGCCACATTAAGGTATGTAAATAATCTGTCAATCTGCAGTGTATTTCTTTAGACAATGACGTGT
AGGATTTGTCACCCAATGGCGCATTGAACAACATGGGTGTCAGAAGTTAAATTATTGTGAGGGGGAAAGCTATAGTCCC
CGATAGCTGAAGGAAAACTGCAGATATACTAAGCTTTAAAATACATTGCTTGACTTGCTGTGAAGGCCAGGTCTTGATG
ATACACTGATAATAAGTACGATGACTTAGATTTCTAACGCAGACTAACTCATTGGCTCAAAGGGTACCCTTGGGCTTGT
CTGTTTCTCCCGCTACCTGGCAAGTTCATATCCTGAGCAAAATGGTTTGTTTTACATAAGCCATAGTGGATAACTTTTA
AAACGAAGTGCCTAATGTACTGAAGCAAAAATTCTAAATCAGGGAATTCCTTAAATAACTCTTCATTGTGTGCGCATGA
GTATGGTGGCAGCTTTAAGAGAAGAAGCAAATATTTGCACCATGTCAGTCTCGTTGTAACCTTATGGGCAGGTCCTGAC
CCCGAAGATTGTGTCAGGGTTTTTACCGCAGAATGATTTTGTGTGCAACTGCGGGATGCGGTCTCCGAGGTGCTCCATC
AAGAGATTGCACCAGCGGCAGATAGCTGTGCAACCCTGTTCTGTGTCAATAGTGTAAATATTGTTCTAAGCTCTCCTAT
TTTATTGTGAAAGGAAATTGTGTAAATGATGTAAGTGCATTATTATTTAGAATATTTTGTAGAAGATAGTGTTATTTCA
TTGTATTTTTTTTTTACTTGTACTTGGGAAGTATAATTTAAATTGG
CitationHervé Acloque, Oscar H. Ocaña, Ander Matheu, Karine Rizzoti, Clare Wise, Robin Lovell-Badge, M. Angela Nieto Reciprocal Repression between Sox3 and Snail Transcription Factors Defines Embryonic Territories at Gastrulation. Dev Cell. 2011 September 13; 21(3): 546–558.
CopyrightCopyright © 2011 Published by Elsevier Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # NM_204940.1)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
stage 3
Early Mesoderm
Hensen's Node
Primitive Streak
 

Entry 10

GEISHA IdBRACHYURY.Dubrulle.2001Data SourcePublication
Complete cDNA Template Probeshow
CGAGCTCGGGCGGAGGCAGCCGGGCCCCGCCGGCGGCGCTCGGGGAGGGGGGGGGGGCTTCGGGGGCGGCCATGGGCTC
CCCGGAGGACGCGGGCAAGGCGCCGGCGTACCGAGTGGACCACCTGCTGAGCGCGGTGGAGAGCGAGCTGCAGGCGGGC
AGCGAGAAGGGAGACCCGACGGAGCGCGAGCTGCGCGTGGCGCTGGAGGACGGCGAGCTGTGNCTGCGCTTCAAGGAGC
TCACCAACGAGATGATCGTCACCAAGAACGGCAGGAGGATGTTCCCGGTGCTGAAGGTGAGCGTGTCGGGGCTGGACCC
CAACGCCATGTACTCCTTCCTGCTGGACTTCGTGGCGGCCGACGGGCACCGCTGGAAGTACGTCAACGGCGAGTGGGTG
CCGGGCGGCAAGCCGGAGCCGCAGGCGCCCAGCTGCGTCTACATCCACCCCGACTCGCCCAACTTCGGCGCCCACTGGA
TGAAGGCGCCCGTCTCCTTCAGCAAGGTCAAGCTCACCAACAAGCTCAACGGCGGCGGGCAGATCATGCTCAACTCCCT
GCACAAGTACGAGCCCCGCATCCACATCGTGCGGGTGGGCGGCCCGCAGCGGATGATCACCAGCCATTCCTTCCCCGAG
ACCCAGTTCACTGCCGTGACGGCGTACCAGAACGAGGAGATCACAGCTTTGAAAATTAAATACAACCCATTTGCGAAGG
CATTTCTTGACGCAAAGGAAAGAAATGATCACAAAGACATGATGGAGGAAGCGGGAGACAACCAGCAGTCTGGATACTC
GCAGTTAGGTAGTTGGCTTATTCCCGGGGCTGGGGCTCTGTGCCCACCTGCCAATCCTCACTCTCAGTTTGGAGCACCC
CTGTCTCTCTCCCCTGCTCACAGCTGTGAAAGGTACTCACCGCTGAGGAATCACCGTTCTGCCCCCTACCCCAATCCCT
ACACCCATAGAAACAACTCACCAACAGCTTACACTGATAACTCCTCTGCCTGCCTTCCCATGCTCCAGTCCCATGACAA
TTGGTCCTCCCTGGGAGTTCCCACACACACGACTATGCTGCCCATGAGCCACAGCACTGGCACAGCTACCAGCTCCAGT
CAGTACCCGAACTTATGGTCCGTGAGTAACAGCACCATCACCCCGGCGCCTCAGTCAAGCGGGATGTCCAACGGCCTGA
GCTCCCAGTTCCTGCGTGGCTCTCCGGTGCACTACACCGCTCTCCCACATCCCGTCACTGCCACCACCTCCACATCCCC
ACTGTACGATGGAGGAGCACCTGCAGACCTTCCTGACAGCCAGTACGATGCCTCTGCACACACTCGGTTGGCATCCATG
TGGACGCCCATCACCCCACCTTCCATGTAAACTCAGACCTCTACTTTAGAACAGACTTTTTTAGCTACTGAATTACTTT
AAATGCTTAATCCTCAAGGAAGAGAAAAAGGAGACGTGAAGGAAATTATAGATAAAGCATCTGCACTGCTTTGAGTAGA
GCATCCAAGTTATGTCTCTGATAGTGAACAGACCATCATTAACTTCATGCAGAGTTTACAAATCTGGTGAGCGTGCAAT
TCTGAGAGCAGACTGACTGCTTTTCATCTTTTTTGTTTTCTAGCTTGATAGGTCTAATTTTTAAGATTTTGACTTAGAT
TCCAAATTTCTCAGTGTTCTGATATATTTGGACCTCAAGTTTGGCATCTGGACAACTTTCTTGAGTAAGTTACTCCTGA
TTGGTTTTCTTTTTTTTTTTTTTTAAATGGCAAACCTAGGAATAGCCATATTACACTGTTATTAACCACCTAGGTAGAA
GCATTCTGAATTCTGCACAAGTGTAGCTGAGGATGGAAGTTTTTGGAAGATCACGTGCACTAATGCGTATTTGTCTCAC
AGATACGGTTGTGTTCTTAACTGTATGCTTGTTTCCTTGCTGCTGAATTACTGTTGAGACAATCTGCAAGAACTGTTTT
ACTCCTAATAAATTACAGTATTATCATTGGTCTAAATTGTTTTACCCCAGAGATTCCTTTTCGAGGTAAGTTTTGCTGT
TGATCACATTCAGACCCCTGTCAGCTTTGCCAAACGTCTTTATTTCAAACAGCCGGTGTCTTAATGTGAAGTCCTCTCC
AAAACCATTTCAACTCATTGAAAAACATCACGGTCTTTTATGATCTCTTGCTCAGGCCGTAAAGGGAGGGAATTCAATA
CCTGGAGAATCATTCTAATATATATATTTTTTTTCAATGTAATACTCTGTTGAATTGTATTTATTGTTTCTTAAGCTTG
CATCTTCCGTTCGTCTGCCACATTAAGGTATGTAAATAATCTGTCAATCTGCAGTGTATTTCTTTAGACAATGACGTGT
AGGATTTGTCACCCAATGGCGCATTGAACAACATGGGTGTCAGAAGTTAAATTATTGTGAGGGGGAAAGCTATAGTCCC
CGATAGCTGAAGGAAAACTGCAGATATACTAAGCTTTAAAATACATTGCTTGACTTGCTGTGAAGGCCAGGTCTTGATG
ATACACTGATAATAAGTACGATGACTTAGATTTCTAACGCAGACTAACTCATTGGCTCAAAGGGTACCCTTGGGCTTGT
CTGTTTCTCCCGCTACCTGGCAAGTTCATATCCTGAGCAAAATGGTTTGTTTTACATAAGCCATAGTGGATAACTTTTA
AAACGAAGTGCCTAATGTACTGAAGCAAAAATTCTAAATCAGGGAATTCCTTAAATAACTCTTCATTGTGTGCGCATGA
GTATGGTGGCAGCTTTAAGAGAAGAAGCAAATATTTGCACCATGTCAGTCTCGTTGTAACCTTATGGGCAGGTCCTGAC
CCCGAAGATTGTGTCAGGGTTTTTACCGCAGAATGATTTTGTGTGCAACTGCGGGATGCGGTCTCCGAGGTGCTCCATC
AAGAGATTGCACCAGCGGCAGATAGCTGTGCAACCCTGTTCTGTGTCAATAGTGTAAATATTGTTCTAAGCTCTCCTAT
TTTATTGTGAAAGGAAATTGTGTAAATGATGTAAGTGCATTATTATTTAGAATATTTTGTAGAAGATAGTGTTATTTCA
TTGTATTTTTTTTTTACTTGTACTTGGGAAGTATAATTTAAATTGG
CitationDubrulle J, McGrew MJ, Pourquié O. FGF signaling controls somite boundary position and regulates segmentation clock control of spatiotemporal Hox gene activation. Cell. 2001 Jul 27;106(2):219-32.
CopyrightCopyright © 2001 Cell Press. All rights reserved.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204940).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13
stage 13
stage 13
Notochord
Primitive Streak
 

Entry 11

GEISHA IdBRACHYURY.Dady.2012Data SourcePublication
Complete cDNA Template Probeshow
CGAGCTCGGGCGGAGGCAGCCGGGCCCCGCCGGCGGCGCTCGGGGAGGGGGGGGGGGCTTCGGGGGCGACCATGGGCTC
CCCGGAGGACGCGGGCAAGGCGCCGGCGTACCGAGTGGACCACCTGCTGAGCGCGGTGGAGAGCGAGCTGCAGGCGGGC
AGCGAGAAGGGAGACCCGACGGAGCGCGAGCTGCGCGTGGCGCTGGAGGACGGCGAGCTGTGGCTGCGCTTCAAGGAGC
TCACCAACGAGATGATCGTCACCAAGAACGGCAGGAGGATGTTCCCGGTGCTGAAGGTGAGCGTGTCGGGGCTGGACCC
CAACGCCATGTACTCCTTCCTGCTGGACTTCGTGGCGGCCGACGGGCACCGCTGGAAGTACGTCAACGGCGAGTGGGTG
CCGGGCGGCAAGCCGGAGCCGCAGGCGCCCAGCTGCGTCTACATCCACCCCGACTCGCCCAACTTCGGCGCCCACTGGA
TGAAGGCGCCCGTCTCCTTCAGCAAGGTCAAGCTCACCAACAAGCTCAACGGCGGCGGGCAGATCATGCTCAACTCCCT
GCACAAGTACGAGCCCCGCATCCACATCGTGCGGGTGGGCGGCCCGCAGCGGATGATCACCAGCCATTCCTTCCCCGAG
ACCCAGTTCATCGCTGTGACGGCGTACCAGAACGAGGAGATCACAGCTTTAAAAATTAAATACAACCCATTTGCGAAGG
CATTTCTTGACGCAAAGGAAAGAAATGATCACAAAGACATGATGGAGGAAGCGGGAGACAACCAGCAGTCTGGATACTC
GCAGTTAGGTAGTTGGCTTATTCCCGGGACTGGGGCTCTGTGCCCACCTGCCAATCCTCACTCTCAGTTTGGAGCACCC
CTGTCTCTCTCCCCTGCTCACAGCTGTGAAAGGTACTCACCGCTGAGGAATCACCGTTCTGCCCCCTACCCCAATCCCT
ACACCCATAGAAACAACTCACCAACAGCTTACACTGATAACTCCTCTGCCTGCCTTCCCATGCTCCAGTCCCATGACAA
TTGGTCCTCCCTGGGAGTTCCCACACACACGACTATGCTGCCCATGAGCCACAGCACTGGCACGGCTACCAGCTCCAGT
CAGTACCCGAACTTATGGTCCGTGAGTAACAGCACCATCACCCCGGCGCCTCAGTCAAGCGGGATGTCCAACGGCCTGA
GCTCCCAGTTCCTGCGTGGCTCTCCGGTGCACTACACCGCTCTCCCACATCCCGTCACTGCCACCACCTCCACATCCCC
ACTGTACGATGGAGGAGCACCTGCAGACCTTCCTGACAGCCAGTACGATGCCTCTGCACACACTCGGTTGGCATCCATG
TGGACGCCCATCACCCCACCTTCCATGTAAACTCAGACCTCTACTTTAGAACAGACTTTTTTAGCTACTGAATTACTTT
AAATGCTTAATCCTCAAGGAAGAGAAAAAGGAGACGTGAAGGAAATTATAGATAAAGCACCTGCACTGCTTTGCGTAGA
GCATCCAAGTTATGTCTCTGATAGTGAACAGACCATCATTAACTTCATGCAGAGTTTACAAATCTGGTGAGCGTGCAAT
TCTGAGAGCAGACTGACTGCTTTTCATCTTTTTTGTTTTCTAGCTTGATAGGTCTAATTTTTAAGATTTTGACTTAGAT
TCCAAATTTCTCAGTGTTCTGATATATTTGGACCTGAAGTTTGGCATCTGGACAACTTTCTTGAGTAAGTTACTCCTGA
TTGGTTTTCTTTTTTTTTTTTTAAATGGCAAACCTAGGAATAGCCATATTAGACTGTTATTAACCACCTAGGTAGAAGC
ATTCTGAATTCTGCACAAGTGTAGCTGAGGATGGAAGTTTTTGGAAGATCATGTGCACTAATGCGTATTTGTCTCACAG
ATACGTTGTGTTCTTAACTGTATGCTTGTTTCCTTGCTGCTGAATTACTGTTGAGACAATCTGCAAGAACTGTTTTCCT
CCTAATAAATTACAGTATTATCATTTGGTCTAAATTGTTTTACCCCAGAGATTCCTTTTCGAGGTAAGTTTTGCTGTTT
GATCATATTCAGACCCCTGTCAGCTTTGCCAAACGTCTTTATTTCAAACAGCCGGTGTCTTAATGTGAAGTCCTCTCCA
AAACCATTTCAACTCATTGAAAAACATCACGGTCTTTTATGATCTCTTGCTCAGGCCGTAAAGGGAGGGAATTCAATAC
CTGGAGAATCATTCTAATATATATATTTTTTTTCAATGTAATACTCTGTTGAATTGTATTTATTGTTTCTTAAGTTGCA
TCTTCGTTGTCTGCACATTAAGGTATGTAAATAATCTGTCAATCTGCAGTGTATTTCTTTAGACAATGACGTGTAGGAT
TTGTCACCCAATGGCGCATTGAACAACATGGGTGTCAGTAGTTAAATTATTGTGAGGGGAAAGCTATAGTCCCCGATAG
CTGAAGGAAAACTGCAGGTATACTAAGCTTTAAAATACATTGCTTGACTTGCTGTGAAGGCCAGGTCTTGATGATACAC
TGATAATAAGTACAATGACTTAGATTTCTAACGCAGACTAACTCATTGGTTCAAAGGGTACCCTTGGGCTTGTCTGTTT
CTCCCGCTACCTGGCAAGTTCATATCCTGAGGAAAATGGTTTGTTTTACATAAGCCATAGTGGATAACTTTTAAAACGA
AGTGCCTAATGTACTGAAGCAAAAATTCTAAATCAGGGAATTCCTTAAATAACTCTTCATTGTGTGCGCATGAGCTATG
GTGGCAGCTTTAAGCAGAAGAAGCAAATATTTGCCACCATGTCAGTCTCGTTGTAACCTTATGGGCAGGTCCCTGCACC
CCGAAGGATTGTGTCAGGGTTTTTACCCTGCAGAATGATTTGTGTGCAACTGCGGGATGCGGTCTCCGAGGTGCTCCAT
CAAGAGATTGCACCAGCGGCAGATAGCTGTGCAACCCTGTTCTGTGTCAATAGTGTAAATATTGTTCTAAGCTCTCCTA
TTTTATTGTGAAAGGAAATTGTGTAAATGATGTAAGTGCATTATTATTTAGAATATTTTGTAGAAGATAGTGTTATTTC
ATTGTATTTTTTTTACTTGTACTTGGGAAGTATAATTTAAATTGG
CitationDady A, Blavet C, Duband JL Timing and kinetics of E- to N-cadherin switch during neurulation in the avian embryo DEVELOPMENTAL DYNAMICS. Volume 241, Issue 8, August 2012, Pages: 1333–1349.
CopyrightCopyright © 2012 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204940.2).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
Early Mesoderm
Primitive Streak
 
7-10
stage 7
stage 7
stage 8
stage 10
Central Nervous System
Notochord
Primitive Streak
Somites
 

Entry 12

GEISHA IdT.Liu.2003Data SourcePublication
Complete cDNA Template Probeshow
CGAGCTCGGGCGGAGGCAGCCGGGCCCCGCCGGCGGCGCTCGGGGAGGGGGGGGGGGCTTCGGGGGCGACCATGGGCTC
CCCGGAGGACGCGGGCAAGGCGCCGGCGTACCGAGTGGACCACCTGCTGAGCGCGGTGGAGAGCGAGCTGCAGGCGGGC
AGCGAGAAGGGAGACCCGACGGAGCGCGAGCTGCGCGTGGCGCTGGAGGACGGCGAGCTGTGGCTGCGCTTCAAGGAGC
TCACCAACGAGATGATCGTCACCAAGAACGGCAGGAGGATGTTCCCGGTGCTGAAGGTGAGCGTGTCGGGGCTGGACCC
CAACGCCATGTACTCCTTCCTGCTGGACTTCGTGGCGGCCGACGGGCACCGCTGGAAGTACGTCAACGGCGAGTGGGTG
CCGGGCGGCAAGCCGGAGCCGCAGGCGCCCAGCTGCGTCTACATCCACCCCGACTCGCCCAACTTCGGCGCCCACTGGA
TGAAGGCGCCCGTCTCCTTCAGCAAGGTCAAGCTCACCAACAAGCTCAACGGCGGCGGGCAGATCATGCTCAACTCCCT
GCACAAGTACGAGCCCCGCATCCACATCGTGCGGGTGGGCGGCCCGCAGCGGATGATCACCAGCCATTCCTTCCCCGAG
ACCCAGTTCATCGCTGTGACGGCGTACCAGAACGAGGAGATCACAGCTTTAAAAATTAAATACAACCCATTTGCGAAGG
CATTTCTTGACGCAAAGGAAAGAAATGATCACAAAGACATGATGGAGGAAGCGGGAGACAACCAGCAGTCTGGATACTC
GCAGTTAGGTAGTTGGCTTATTCCCGGGACTGGGGCTCTGTGCCCACCTGCCAATCCTCACTCTCAGTTTGGAGCACCC
CTGTCTCTCTCCCCTGCTCACAGCTGTGAAAGGTACTCACCGCTGAGGAATCACCGTTCTGCCCCCTACCCCAATCCCT
ACACCCATAGAAACAACTCACCAACAGCTTACACTGATAACTCCTCTGCCTGCCTTCCCATGCTCCAGTCCCATGACAA
TTGGTCCTCCCTGGGAGTTCCCACACACACGACTATGCTGCCCATGAGCCACAGCACTGGCACGGCTACCAGCTCCAGT
CAGTACCCGAACTTATGGTCCGTGAGTAACAGCACCATCACCCCGGCGCCTCAGTCAAGCGGGATGTCCAACGGCCTGA
GCTCCCAGTTCCTGCGTGGCTCTCCGGTGCACTACACCGCTCTCCCACATCCCGTCACTGCCACCACCTCCACATCCCC
ACTGTACGATGGAGGAGCACCTGCAGACCTTCCTGACAGCCAGTACGATGCCTCTGCACACACTCGGTTGGCATCCATG
TGGACGCCCATCACCCCACCTTCCATGTAAACTCAGACCTCTACTTTAGAACAGACTTTTTTAGCTACTGAATTACTTT
AAATGCTTAATCCTCAAGGAAGAGAAAAAGGAGACGTGAAGGAAATTATAGATAAAGCACCTGCACTGCTTTGCGTAGA
GCATCCAAGTTATGTCTCTGATAGTGAACAGACCATCATTAACTTCATGCAGAGTTTACAAATCTGGTGAGCGTGCAAT
TCTGAGAGCAGACTGACTGCTTTTCATCTTTTTTGTTTTCTAGCTTGATAGGTCTAATTTTTAAGATTTTGACTTAGAT
TCCAAATTTCTCAGTGTTCTGATATATTTGGACCTGAAGTTTGGCATCTGGACAACTTTCTTGAGTAAGTTACTCCTGA
TTGGTTTTCTTTTTTTTTTTTTAAATGGCAAACCTAGGAATAGCCATATTAGACTGTTATTAACCACCTAGGTAGAAGC
ATTCTGAATTCTGCACAAGTGTAGCTGAGGATGGAAGTTTTTGGAAGATCATGTGCACTAATGCGTATTTGTCTCACAG
ATACGTTGTGTTCTTAACTGTATGCTTGTTTCCTTGCTGCTGAATTACTGTTGAGACAATCTGCAAGAACTGTTTTCCT
CCTAATAAATTACAGTATTATCATTTGGTCTAAATTGTTTTACCCCAGAGATTCCTTTTCGAGGTAAGTTTTGCTGTTT
GATCATATTCAGACCCCTGTCAGCTTTGCCAAACGTCTTTATTTCAAACAGCCGGTGTCTTAATGTGAAGTCCTCTCCA
AAACCATTTCAACTCATTGAAAAACATCACGGTCTTTTATGATCTCTTGCTCAGGCCGTAAAGGGAGGGAATTCAATAC
CTGGAGAATCATTCTAATATATATATTTTTTTTCAATGTAATACTCTGTTGAATTGTATTTATTGTTTCTTAAGTTGCA
TCTTCGTTGTCTGCACATTAAGGTATGTAAATAATCTGTCAATCTGCAGTGTATTTCTTTAGACAATGACGTGTAGGAT
TTGTCACCCAATGGCGCATTGAACAACATGGGTGTCAGTAGTTAAATTATTGTGAGGGGAAAGCTATAGTCCCCGATAG
CTGAAGGAAAACTGCAGGTATACTAAGCTTTAAAATACATTGCTTGACTTGCTGTGAAGGCCAGGTCTTGATGATACAC
TGATAATAAGTACAATGACTTAGATTTCTAACGCAGACTAACTCATTGGTTCAAAGGGTACCCTTGGGCTTGTCTGTTT
CTCCCGCTACCTGGCAAGTTCATATCCTGAGGAAAATGGTTTGTTTTACATAAGCCATAGTGGATAACTTTTAAAACGA
AGTGCCTAATGTACTGAAGCAAAAATTCTAAATCAGGGAATTCCTTAAATAACTCTTCATTGTGTGCGCATGAGCTATG
GTGGCAGCTTTAAGCAGAAGAAGCAAATATTTGCCACCATGTCAGTCTCGTTGTAACCTTATGGGCAGGTCCCTGCACC
CCGAAGGATTGTGTCAGGGTTTTTACCCTGCAGAATGATTTGTGTGCAACTGCGGGATGCGGTCTCCGAGGTGCTCCAT
CAAGAGATTGCACCAGCGGCAGATAGCTGTGCAACCCTGTTCTGTGTCAATAGTGTAAATATTGTTCTAAGCTCTCCTA
TTTTATTGTGAAAGGAAATTGTGTAAATGATGTAAGTGCATTATTATTTAGAATATTTTGTAGAAGATAGTGTTATTTC
ATTGTATTTTTTTTACTTGTACTTGGGAAGTATAATTTAAATTGG
CitationLiu C1, Nakamura E, Knezevic V, Hunter S, Thompson K, Mackem S. A role for the mesenchymal T-box gene Brachyury in AER formation during limb development. Development. 2003 Apr;130(7):1327-37.
CopyrightCopyright © 2003 The Company of Biologists Ltd.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence above was obtained from NCBI (accession NM_204940.2).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 15
stage 15
stage 18
stage 18
stage 18
Leg Mesenchyme
Limb Buds
Nephric Ducts
Notochord
Somites
Tail
Wing Mesenchyme
 
19-22
stage 22
stage 22
Leg Mesenchyme
Nephric Ducts
Notochord
Somites
Tail
 

Mouse

EmageMGI:98472
MGI GXDMGI:98472

Frog

Xenbase478788

Fruit Fly

BDGPFBgn0011723

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-081028-48, ZDB-GENE-980526-437
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