GEISHA - A Chicken Embryo Gene Expression Database
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_

AGRN
agrin

The human orthologue of this gene is associated
with the following human disease:
Gene
Official SymbolAGRN
Official Full Nameagrin
CGNC ID1448
also known asHSPG, agrin|heparan sulfate proteoglycan
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_205527
PolypeptideNP_990858
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.48948
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human375790ENSG00000188157MIM:254300MIM:103320
Mouse11603ENSMUSG00000041936All phenotypic alleles (7):Targeted, knock-out(4) Targeted, other(2) Gene trapped(1) MGI:87961
Xenopus100492176953966
Zebrafish565373ENSDARG00000079388ZDB-GENE-060922-2, ZDB-GENE-030131-1033ZFIN:ZDB-GENE-060922-2, ZFIN:ZDB-GENE-030131-1033
Gene Ontology
Molecular Functionacetylcholine receptor regulator activity, calcium ion binding, chondroitin sulfate binding, more...dystroglycan binding, heparan sulfate proteoglycan binding, heparin binding, laminin binding, protein binding, sialic acid binding, transmembrane receptor protein tyrosine kinase activator activity
Biological Processactivation of transmembrane receptor protein tyrosine kinase activity, cell differentiation, more...G-protein coupled acetylcholine receptor signaling pathway, multicellular organismal development, positive regulation of filopodium assembly, positive regulation of Rho GTPase activity, positive regulation of synaptic growth at neuromuscular junction, positive regulation of transcription from RNA polymerase II promoter, receptor clustering, regulation of receptor activity
Cellular Componentbasal lamina, cell junction, extracellular region, integral component of membrane, plasma membrane, synapse
Links to other databases
Entrez Gene396538
Ensembl GeneENSGALG00000002041
KEGGgga:396538

Entry 1

GEISHA IdAGRN.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerAACCCCAACTCCAGCCATTGAG
Reverse cDNA Template PrimerAATTAACCCTCACTAAAGGGATGAAGTCCTTGCCACGATTCcDNA Template Length988
Complete cDNA Template Probeshow
AACCCCAACTCCAGCCATTGAGAGGGCAACGTGCTACAACACCCCACTCGGGTGCTGCTCTGATGGCAAGACTGCAGCT
GCTGATGCAGAAGGGAGCAACTGTCCGGCTACCAAAGTCTTCCAAGGAGTCCTCATCTTGGAGGAGGTGGAAGGCCAGG
AGCTGTTCTACACACCTGAGATGGCTGACCCCAAGTCAGAGCTCTTCGGGGAGACAGCCAGGAGCATCGAGAGCGCACT
GGACGAGCTTTTCCGAAATTCTGATGTTAAGAATGATTTCAAGAGCATCCGTGTCCGAGACCTGGGGCAGAGCAGCGCT
GTCCGTGTCATTGTGGAGTCCCACTTTGACCCAGCCACTTCCTACACAGCAGCTGACGTTCAGGCGGCCCTGCTGAAGC
AGATCAGAGCCTCCAAGAAGAGGACCATCCTGGTGAAGAAGCCCCAGCAGGAGCATGTCAAATTCATGGACTTCGACTG
GATCCCCAGGATCTTCACCACCACCATCACCACCACCACGGCCACCACCATGGCACCTGCCACCACACGGAGGCACACC
ACAGCCTCTGCTGCCACCACTGCCCACATCCTGCGCCAGGACACCGTGGGTCACCCCAGTGCCAAGCTGGCAGCACCTG
CAAGCACCAGGAGGCCTACATCCACCCTGCCTACCACCGCCCGGCGCAAACCCACTCGCCAGCCCCCCAGCACCACCAA
GAAGCCCTCACGACCCTGCGACTCACACCCCTGCCTGCATGGTGGCACCTGTGAGGACGATGGCAAGGAGTTCACCTGC
AGCTGCCCAGCAGGCAAAGGAGGAGCTGTGTGTGAGAAACCCATCAGGTACTTCATCCCCAGCTTCGGTGGCAAGTCCT
ACCTGGCCTTCAAGATGATGAAGGCGTACCACACCGTGCGCATCGCCATGGAGTTCAGGGCCACGGAGCTCAGCGGGCT
GCTGCTCTACAACGGGCAGAATCGTGGCAAGGACTTCATC
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 5
stage 5
Early Endoderm
Early Mesoderm
Epiblast
Extraembryonic Mesoderm
extraembryonic ectoderm
 
7-12
stage 7
stage 7
stage 9
stage 9
stage 11
stage 11
stage 12
stage 12
stage 12
stage 12
Amnion
Blood Islands
Blood Vessels
Ear/Otic Placode
Ectoderm
Endoderm
Extraembryonic Blood Vessels
Extraembryonic Mesoderm
Eye
Forebrain
Head Mesenchyme
Headfold
Heart
Heart Tube
Hensen's Node
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Notochord
Sinus Venosus
Somatic Mesoderm
Somites
Widespread Expression
extraembryonic ectoderm
extraembryonic endoderm
extraembryonic mesoderm
 
13-18
stage 17
stage 18
stage 18
stage 18
stage 18
stage 18
stage 18
stage 18
stage 18
Anterior Intestinal Portal
Dermatome
Ectoderm
Endoderm
Extraembryonic Blood Vessels
Foregut
Heart
Hindbrain
Liver
Nephric Ducts
Nephric Tubules
Neural Plate/Tube
Notochord
Pharyngeal Arches and Clefts
Sclerotome
Sinus Venosus
Somatic Mesoderm
Splanchnic Mesoderm
Widespread Expression
Yolk Sack or Stalk
extraembryonic ectoderm
extraembryonic endoderm
extraembryonic mesoderm
 
19
stage 19
stage 19
Widespread Expression
 

Entry 2

GEISHA IdAGRIN.Halfter.2005Data SourcePublication
Complete cDNA Template Probeshow
GGACCCCTTAATCTGTGACAACCAAGTGTCGACCGGGGACACACGGATATCTTTGTCAACCCAGCCCCTCAGTACATGT
GGCCTGCCCACCGCAACGAGCTGATGCTCAACTCCAGCCTGATGCGGATCACGCTGCGCAACCTGGAGGAGGTGGAGCA
CTGCGTGGAAGAACATAGGAAGCTTCTTGCTGACAAGCCCAATAGCTATTTTACCCAGACCCCGCCGACCCCTCGAGAT
GCCTGCCGAGGGATGCTGTGTGGGTTCGGGGCGGTGTGCGAGCGCAGCCCCACTGACCCCTCCCAAGCCTCCTGTGTCT
GCAAGAAGACAGCTTGCCCTGTGGTGGTGGCTCCTGTCTGCGGCTCCGACTATTCCACCTACAGCAACGAGTGTGAGCT
GGAGAAAGCCCAGTGCAACCAGCAGAGGCGGATCAAGGTCATCAGCAAGGGACCATGTGGCTCCAAGGACCCCTGTGCA
GAGGTGACGTGCAGCTTTGGCAGCACGTGCGTCCGCTCTGCAGATGGCCAGACGGCAGGGTGTGTTTGCCCCGCATCCT
GCAGCGGTGTGGCCGAGAGCATCGTCTGCGGCAGTGATGGCAAGGACTACCGCAGCGAGTGCGACCTCAACAAGCACGC
CTGTGACAAGCAGGAGAATGTCTTCAAGAAGTTTGATGGAGCCTGCGACCCCTGTAAGGGCATCCTCAACGACATGAAC
CGTGTGTGCCGGGTGAACCCCCGCACCCGCCGGGTGGAGCTGCTCTCCCGCCCCGAGAACTGTCCCTCAAAGAGGGAGC
CAGTGTGCGGTGACGATGGGGTGACATATGCCAGTGAGTGTGTGATGGGGCGCACGGGGGCCATCCGGGGGCTGGAGAT
CCAGAAGGTGCGCTCTGGGCAGTGCCAGCACCAGGACAAATGCAAGGATGAATGCAAGTTCAATGCTGTCTGCCTGAAG
CGGTGGCACGCGCGCTGCTCCTGCGACCGCATCACTTGTGATGGCACCTACCGGCCTGTCTGCGCCCGCGACAGCCGCA
CCTACAGCAATGACTGTGAGCGGCAGAAAGCCGAGTGCCACCAGAAAGCTGCCATCCCAGTGAAGCACAGCGGACCCTG
TGACCTGGGTACTCCCAGCCCCTGCCTGAGCGTGGAGTGCACTTTTGGGGCCACCTGCGTGGTGAAGAACCGGGAGCCC
GTGTGCGAGTGCCAGCAGGTGTGCCAGGGCCGCTATGACCCCGTCTGCGGCAGCGACAACCGCACCTACGGCAACCCCT
GCGAGCTCAACGCCATGGCCTGCGTCCTCAAGAGAGAGATCAGGGTGAAGCACAAGGGGCCCTGCGACCGCTGTGGCAA
GTGCCAGTTTGGGGCCATCTGCGAGGCGGAGACGGGGCGGTGCGTGTGCCCCACGGAGTGCGTGCCCTCCTCCCAGCCT
GTCTGTGGCACAGATGGCAACACCTACGGCAGCGAGTGTGAGCTCCACGTCCGAGCGTGCACGCAGCAGAAGAACATTT
TGGTGGCTGCCCAAGGCGACTGCAAGTCCTGCGGCACGACGGTGTGCTCCTTCGGCAGCACGTGTGTGGGTGGGCAGTG
CGTGTGTCCCCGCTGTGAGCAGCAGCCCCTGGCCCAGGTCTGTGGCACCGATGGCCTCACCTATGACAACCGCTGCGAG
CTCCGAGCAGCCTCCTGCCAACAGCAGAAGAGCATCGAGGTGGCCAAGATGGGGCCGTGTGAGGACGAATGTGGCTCAG
GGGGCTCAGGCTCTGGTGATGGGAGTGAGTGTGAGCAGGACCGGTGCCGGCACTACGGGGGCTGGTGGGATGAGGATGC
AGAGGACGACCGCTGTGTGTGTGACTTCACCTGCCTGGCGGTGCCACGCAGCCCGGTCTGTGGCTCTGACGATGTGACC
TACGCCAATGAGTGTGAGCTGAAGAAGACGAGGTGTGAAAAACGCCAGAACCTCTATGTCACCAGCCAAGGAGCCTGCC
GTGCCCTCACCACGACCCCACCGCCTCTCCCAGTTGTGCACTGCAGTCAGACCATCTATGGGTGCTGCCCGGACAACAT
GACCCTGGCGCTCGGAGTGGGTGCAGCCGGGTGCCCAAGCACCTGCCAGTGCAACCCCTATGGCTCCTATGGAGGAACC
TGCGACCCTGCCACGGGGCAGTGCTCCTGCAAGCCAGGTGTTGGGGGGCTCAAGTGTGACCGCTGTGAGCCTGGCTTCT
GGAACTTCCGTGGCATCGTCACCGACAGCAAGAGCGGCTGCACGCCCTGTAACTGTGACCCGGTGGGCTCAGTGCGTGA
TGACTGCGAGCAGATGACTGGGCTCTGCTCGTGCAAGACTGGAATCACTGGCATGAAGTGCAACCAGTGTCCCAACGGC
AGCAAGATGGGCATGGCTGGCTGTGAAAAAGACCCATCAGCTCCAAAATCCTGTGAGGAAATGAGCTGCGAGTTCGGGG
CTACGTGTGTGGAGGTCAACGGCTTTGCCCACTGCGAGTGCCCGTCCCCACTCTGCTCAGAGGCCAACATGACCAAGGT
GTGTGGCTCTGATGGTGTTACCTATGGGGACCAGTGCCAGCTGAAGACCATTGCGTGCCGGCAGGGACAGCTCATCACA
GTGAAACACGTGGGGCAATGCCACGAGTCTATAACTCACACGAGCCATACGATGCCACCCACCCCTCTGCCCACCTTGC
CCTTGGACAAGCTCATCGTACCCCCACCACTGCAGCTGACCACCCAGGCTCCAGAGCCCACTGAGCTGGCCACCACCTC
CCTGCTGATGGAAGCCAGCCCCACTACAAGAAGTCACCCTACAACAAGGCGTGTCACAACGACCCGACCTGTCACCACA
CCATGGATGACCCATGGAGTGCTGAAGACCACCGTCCGCCCACTCTCCACCTCTCCAGTGGTCCTGGCCACCACTCAGC
CTCCCTACGCTGAATCGGGCAGTGCAGAAGGCAGTGGGGACCAGGAGATGAGCATCAGTGGGGACCAGGAATCCAGTGG
GGCAGGCTCTGCTGGGGAAGAGGAGGTGGAGGAAAGCCAGGTAACCCCAACTCCAGCCATTGAGAGGGCAACGTGCTAC
AACACCCCACTCGGGTGCTGCTCTGATGGCAAGACTGCAGCTGCTGATGCAGAAGGGAGCAACTGTCCGGCTACCAAAG
TCTTCCAAGGAGTCCTCATCTTGGAGGAGGTGGAAGGCCAGGAGCTGTTCTACACACCTGAGATGGCTGACCCCAAGTC
AGAGCTCTTCGGGGAGACAGCCAGGAGCATCGAGAGCGCACTGGACGAGCTTTTCCGAAATTCTGACGTTAAGAATGAT
TTCAAGAGCATCCGTGTCCGAGACCTGGGGCAGAGCAGCGCTGTCCGTGTCATTGTGGAGTCCCACTTTGACCCAGCCA
CTTCCTACACAGCAGCTGACGTCCAGGCGGCCTCGCTGAAGCAGATCAGAGCCTCCAAGAAGAGGACCATCCTGGTGAA
GAAACCCCAGCAGGAGCATGTCAAATTCATGGACTTCGACTGGATCCCCAGGATCTTCACCACCACCATCACCACCACC
ACGGCCACCACCATGGCACCTGCCACCACACGGAGGCACACCACAGCCTCTGCTGCCACCACTGCCCACATCCTGCGCC
AGGACACCGTGGGTCACCCCAGTGCCAAGCTGGCAGCACCTGCAAGCACCAGGAGGCCTACATCCACCCTGCCTACCAC
CGCCCGGCGCAAACCCACTCGCCAGCCCCCCAGCACCACCAAGAAGCCCTCACGACCCTGCGACTCACACCCCTGCCTG
CATGGTGGCACCTGTGAGGACGATGGCAGGGAGTTCACCTGCAGGTGCCCAGCAGGCAAAGGAGGAGCTGTGTGTGAGA
AACCCATCAGGTACTTCATCCCCAGCTTCGGTGGCAAGTCCTACCTGGCCTTCAAGATGATGAAGGCGTACCACACCGT
GCGCATCGCCATGGAGTTCAGGGCCACGGAGCTCAGCGGGCTGCTGCTCTACAACGGGCAGAATCGTGGCAAGGACTTC
ATCTCCCTGGCACTGGTGGGCGGCTTCGTGGAGCTCAGGTTTAACACAGGCTCTGGCACGGGCGTCATCACCAGCAAGG
TGCGCGTGGAGCCTGGCAAGTGGCACCAGCTGGTGGTGAACCGCAACCGCCGCAGCGGCATGCTGGCTGTGGATGGGGA
GCACGTCAGTGGGGAGAGCCCCACGGGTACCGATGGGCTCAACCTCGACACCGACCTCTTTGTTGGAGGAGCTCCTGAA
GACCAAATGGCTGTAGTGGCAGAGCGTACTGCGGCTACGGTTGGCCTGAAGGGCTCGATCCGCCTCCTGGATGTGAACA
ACCAGATGTACGACCTGAGGGAGAAAGGCAGCGATGTGCTGTATGGCAGTGGGGTGGGCGAGTGTGGCAACGACCCCTG
CCACCCCAACCCCTGCCACCATGGGGCATCCTGCCACGTCAAGGAGGCAGAGATGTTCCACTGCGAGTGTCTCCACTCC
TACACCGGTCCAACATGTGCTGATGAGAGGAACCCATGCGATCCAACGCCGTGCCACATCTCTGCCACCTGCCTGGTGC
TGCCGGAGGGAGGTGCCATGTGTGCCTGTCCCATGGGACGGGAAGGAGAGTTCTGTGAGCGAGTGACGGAGCAGGACCA
CACCATGCCCTTCCTCCCAGAGTTCAATGGCTTTTCCTACCTGGAGCTGAACGGGCTGCAGACCTTGTTCCTGACCTGC
AGACAAATGTCCATGGAAGTGGTGTTCCTGGCCAAGAGTCCCAGTGGCATGATCTTCTACAATGGGCAGAAGACAGATG
GCAAAGGAGACTTTGTGTCTCTGGCTTTGCACGATGGCTACCTGGAGTATCGATATGACCTGGGAAAGGGGGCAGCTGT
GCTCAGGAGCAAAGAGCCAGTTCCCCTCAACACCTGGATAAGCGTTTTGTTGGAGAGGAGTGGGCGCAAAGGGGTAATG
AGGATCAACAATGGCGAGAGGGTGATGGGAGAGTCACCGAAATCCCGTAAGGTGCCTCACGCCTTCCTCAACCTGAAGG
AGCCATTCTACGTGGGGGGAGCCCCCGATTTCAGCAAGCTGGCTCGAGCTGCAGCCATCTCCACCAGCTTCTATGGAGC
TGTGCAGAGGATCTCCATCAAAGGGGTTCCCTTGCTGAAGGAGCAGCACATCCGCAGCGCCGTTGAAATCTCCACTTTC
CGTGCCCACCCCTGCACCCAAAAGCCCAACCCGTGCCAGAATGGAGGCACCTGCAGCCCCCGGTTGGAGAGCTACGAGT
GTGCCTGCCAGAGGGGCTTCTCTGGGGCTCACTGCGAGAAAGTGATCATTGAGAAGGCAGCTGGAGATGCAGAGGCCAT
TGCATTTGATGGTAGGACGTACATGGAGTACCACAATGCCGTGACAAAGAGTCCCGACGCATTGGACTACCCTGCTGAG
CCCAGCGAGAAGGCTTTGCAATCCAACCACTTTGAGCTGAGCATCAAAACAGAAGCAACCCAGGGCCTGATCTTGTGGA
GTGGGAAGGGGCTGGAGCGATCCGACTACATCGCCCTCGCCATCGTGGATGGCTTCGTGCAGATGATGTATGACCTGGG
CTCCAAGCCAGTCGTCCTGCGGTCCACAGTCCCCATCAACACCAACCACTGGACCCACATCAAAGCATACAGAGTACAG
AGAGAAGGCTCCCTCCAGGTCGGCAACGAAGCTCCCATCACTGGCTCTTCACCGCTGGGTGCCACACAGCTGGACACGG
ATGGGGCCCTGTGGCTGGGGGGAATGGAGCGGCTCAGCGTGGCTCACAAGCTGCCCAAGGCTTACAGCACTGGCTTTAT
TGGCTGTATAAGGGACGTGATTGTCGACCGCCAAGAACTGCATCTGGTGGAGGACGCTTTAAACAACCCCACGATATTA
CACTGCTCAGCCAAATAGACCCCCAGGGACCCTTCCTTCTCCTTCCTTCCTCCTGCCTATTGCTGTAATTATTTTCTAT
TTTTGTAAACTTATTGCTTTTTATATTTTGGGGGGAGGGGGGAAAGGGAGGGGAGGAACCACCATTTCTGTTGGGTTAT
TTTGTTCGGTTGCGGTATATCCAGGTCAGTCAGACTCTAATCGAGCGGCAGCAACAAAGAACAAACCTTGAACCAAGTC
TCCAAGAAGTGACAGAAGAAGTTCCCCATTGCACCTGTGTTGTAAATCTCACTCATACTTGAAGCTTATTTTGGGGTTT
GTTTATTTTCCCCTCTTTTACTTGTGTTCTTGGGTTGTTGTTCACACCATGGGGGGATAAAGGATGCTGGTGCTGGCAA
GCCCTGTGGCCTTTGTGGGTTCACCACTCGCCTATCTCAGGCCCCTGTGTTCACCCCATCTCCCTCCTCCCCCCTTCCT
CTACTATAATTTATGTGTGTAAGGATCTCAAGTGCTTTTCTCCTTTGTGCTCTGTTAAATCAGGGATGCCATGCACTGG
AAGAGAGACCAAGGTCTGCTCTGAGCAGGCAGAAAAGCATTGCTCTTTGGTTGTCTTATGCCTGTTTGCTGGACTGAGA
GGGGCTGGGGGGGGGGGGGAAGCGTCGGTTTCTCTGTTGGCTCTCCCCCTCCTCCTCCTCCTCTTGGACACATGCAGAA
GCAGCTGTGAAACCTCATTTCCATGCTTTGTGTTGACCCAGACTTGTCCTCACCACCTGCTTGCCCTGGCTGCTCTTCC
GAGAGCTTCTGTGCCCCAAACCGTGCACCACTGACAACTTGCAACGTGTCCTCAGGAGCTGGGGGTCCCCTCCTTCAGC
ACCGACTGCGAGGGGTATGGGATTGGGTCCTCTTCTGCTTTAAAGAAACTTCTTGGACCTGTCCTGCCCTGACCCACGT
CCATTTTCCAGCCTCCTGGCACGCTTGCCCTCTGCCTACCACGAGGACGGTTGCAGCGCATCTCTGTAAGCTGGTGTTA
GAACCCATGCCATGGCAAACGCTCACCGTTTTACCTTTGTCTCCAAGCTTTTGCAACACCCGGTGCAATGCAGGGGCTT
CCATGCCGTGATCAGAGCTCCTCCAGTGCCATCAGCCATGGCTCCAGCAGGATGGGGTGGGCTGGGAGCCAAGTGGCCA
GATGGGAGAGCTGGGGAGGGGTTTTTTTTTAAAGTGTTGTCTTTCCTGCCTTTGAAGTGTTGTCTTCCTCCATTCGAGT
CTTGAAAGCAAAATGTCAGCTGCACAGCCACGGTGTGTGTGAGCGTGTGTGGATGTGTGCAAACACTGGGTCTCCCAAA
GCAAAAACAAAGGGATTGCAGCTCTGAGCACTGCAACTCAGGTTCCTTCTCCATGGGAAGAGCTCCCTGCTGCCACATG
GCATCTGTCACCACTGGGCCACCACGGTGTCCCCATCCCACCCTGCGAAGGCAGCTGGCAGTGCTTTGTGGCCAACTGC
CTTATGGAGCATCGAGAATGGGTTGGAAGGGTCCAGCTGGCTGTCAGGTGTTCCCTGACATCCCGGGGGCTGTCGGCTT
GTGGTTTCACACCGATTCCTATCTCACCTTCTGCTGTACCCTTCCAAAATGCTCTTTCTGAGCACTGAGCTTTCAGCCA
CGAGAAGTCGGGGGGCTTTTCTCAGGGCGAGCTCTGAATGCAGACCTAATCAATGGGGACGGCACCATGGCAATCCACT
CTGACTGCCTCTTGCTTTTTGCTCCTTGCCCAAGCAAGAAGAGCCCCATTGCCTACCCCAACCCGTGGAAGTCAACTCT
TGATCTATCATCATGCCCCAAAAACCCAATGGTTATGTCTTTCAGGGAAGATGGTGAGAAGTGGAGGCTCCAGTGTTTG
TGTGTGTGGCAATAGCACGTGTTGAGTGGCTGCTGTATATAACGTGTGGGTCCTGGGGGTGATGGCTGCGTTGGGGCTT
CCAGCTGGATGTCATGGCCACCCCACTGAGACCAATGGGGAGCGTGCCAGCTCAGTGGGAAAGGGCGCCATGGAGGAAG
CTGCTCAATATCCAGAATGCCACTGAAATGAAGCCAGGGTCACTGC
CitationHalfter W, Dong S, Schurer B, Ring C, Cole GJ, Eller A. Embryonic synthesis of the inner limiting membrane and vitreous body. Invest Ophthalmol Vis Sci. 2005 Jun;46(6):2202-9.
CopyrightCopyright © 2013 by the Association for Research in Vision and Ophthalmology
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_205527.1
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-36
stage 36
stage 36
Eye
 

Entry 3

GEISHA IdAGRIN.Ma.1994Data SourcePublication
Complete cDNA Template Probeshow
CCTCCTTTTCACCTCCTGGAACAAAAGTAGCCCTTCTCTCCGCGCTCTGCCCGACCCGCTTTGTGCAGCGGGGACGCGG
GGGGCTGCGGGCGATGGGGGGGTCGGGGGCGGCCGCGACCCTGGCGCTGGGTTTGGCGCTGGGATTGGCCCTGGGAGGG
TGGGCGAACTGCCCCGAACGGGAGCTGCAGCGCCGAGAGGAGGAGGCCAACGTGGTGCTCACCGGAACGGTGGAGGAGA
TCATGAACGTGGACCCCGTGCACCACACCTACTCGTGCAAGGTGAGAGTGTGGCGTTACCTGAAAGGCAAAGACATCGT
CACCCACGAGATCCTCTTGGACGGTGGGAACAAAGTGGTCATCGGTGGCTTCGGGGACCCCTTAATCTGTGACAACCAA
GTGTCGACCGGGGACACACGGATATTCTTTGTCAACCCAGCCCCTCAGTACATGTGGCCTGCCCATCGCAACGAGCTGA
TGCTCAACTCCAGCCTGATGCGGATCACGCTGCGCAACCTGGAGGAGGTGGAGCACTGCGTGGAAGAACATAGGAAGCT
TCTTGCTGACAAGCCCAATAGCTATTTTACCCAGACCCCGCCGACCCCTCGAGATGCCTGCCGAGGGATGCTGTGTGGG
TTCGGGGCGGTGTGCGAGCGCAGCCCCACTGACCCCTCCCAAGCCTCCTGTGTCTGCAAGAAGACAGCTTGCCCTGTGG
TGGTGGCTCCTGTCTGCGGCTCCGACTATTCCACCTACAGCAACGAGTGTGAGCTGGAGAAAGCCCAGTGCAACCAGCA
GAGGCGGATCAAGGTCATCAGCAAGGGACCATGTGGCTCCAAGGACCCCTGTGCAGAGGTGACGTGCAGCTTTGGCAGC
ACGTGCGTCCGCTCTGCAGATGGCCAGACGGCCAGGTGTGTGTGCCCCGCATCCTGCAGCGGTGTGGCTGAGAGCATCG
TCTGCGGCAGTGATGGCAAGGACTACCGCAGTGAGTGCGACCTCAACAAGCACGCCTGTGACAAGCAGGAGAATGTCTT
CAAGAAGTTTGATGGAGCCTGCGACCCCTGTAAGGGCATCCTCAACGACATGAACCGTGTGTGCCGGGTGAACCCCCGC
ACCCGCCGGGTGGAGCTGCTCTCCCGCCCCGAGAACTGTCCCTCAAAGAGGGAGCCAGTGTGCGGTGACGATGGGGTGA
CGTATGCCAGTGAGTGTGTGATGGGGCGCACGGGGGCCATCCGGGGGCTGGAGATCCAGAAGGTGCGCTCTGGGCAGTG
CCAGCACCAGGACAAATGCAAGGATGAATGCAAGTTCAATGCTGTCTGCCTGAACCGCCGTGGCACGGCGCGCTGCTCC
TGCGACCGCATCACTTGTGATGGCACCTACCGGCCTGTCTGTGCCCGCGACAGCCGCACCTACAGCAACGACTGTGAGC
GGCAGAAAGCCGAGTGCCACCAGAAAGCTGCCATCCCAGTGAAGCACAGCGGACCCTGTGACCTGGGTACTCCCAGCCC
CTGCCTGAGCGTGGAGTGCACTTTTGGGGCCACCTGCGTGGTGAAGAACCGGGAGCCCGTGTGCGAGTGCCAGCAGGTG
TGCCAGGGCCGCTATGACCCCGTCTGCGGCAGCGACAACCGCACCTACGGCAACCCCTGCGAGCTCAACGCCATGGCCT
GCGTCCTCAAGAGAGAGATCAGGGTGAAGCACAAGGGGCCCTGCGACCGCTGTGGCAAGTGCCAGTTTGGGGCCATCTG
CGAGGCGGAGACGGGGCGGTGCGTGTGCCCCACGGAGTGCGTGCCCTCCTCCCAGCCTGTCTGTGGCACAGATGGCAAC
ACCTACGGCAGCGAGTGTGAGCTCCACGTCCGAGCGTGCACGCAGCAGAAGAACATTTTGGTGGCTGCCCAAGGCGACT
GCAAGTCCTGCGGCAGCACGGTGTGCTCCTTCGGCAGCACGTGTGTGGGTGGGCAGTGCGTGTGTCCCCGCTGTGAGCA
GCAGCCCCTGGCCCAGGTCTGTGGCACCGATGGCCTCACCTATGACAACCGCTGCGAGCTCCGAGCAGCCTCCTGCCAA
CAGCAGAAGAGCATCGAGGTGGCCAAGATGGGGCCGTGTGAGGACGAATGTGGCTCAGGGGGCTCAGGCTCTGGTGATG
GGAGTGAGTGTGAGCAGGACCGGTGCCGGCACTACGGGGGCTGGTGGGATGAGGATGCAGAGGACGACCGCTGTGTGTG
TGACTTCACCTGCCTGGCGGTGCCACGCAGCCCGGTCTGTGGCTCTGACGATGTGACCTACGCCAATGAGTGTGAGCTG
AAGAAGACGAGGTGTGAAAAACGCCAGGACCTCTATGTCACCAGCCAAGGAGCCTGCCGTGCCCTCACCACGACCCCAC
CGCCTCTCCCAGTTGTGCACTGCAGTCAGACCATCTATGGGTGCTGCCCGGACAACATGACCCTGGCGCTCGGAGTGGG
TGCAGCCGGGTGCCCAAGCACCTGCCAGTGCAACCCCTATGGCTCCTATGGAGGAACCTGCGACCCTGCCACGGGGCAG
TGCTCCTGCAAGCCAGGTGTTGGGGGGCTCAAGTGTGACCGCTGTGAGCCTGGCTTCTGGAACTTCCGTGGCATCGTCA
CCGACAGCAAGAGCGGCTGCACGCCCTGTAACTGCGACCCGGTGGGCTCAGTGCGTGATGACTGCGAGCAGATGACTGG
GCTCTGCTCCTGCAAGACTGGGATCACTGGCATGAAGTGCAACCAGTGTCCCAACGGCAGCAAGATGGGCATGGCTGGC
TGTGAAAAAGACCCATCAGCTCCAAAATCCTGTGAGGAAATGAGCTGCGAGTTCGGGGCTACGTGTGTGGAGGTCAACG
GCTTTGCCCACTGCGAGTGCCCGTCCCCACTCTGCTCAGAGGCCAACATGACCAAGGTGTGTGGCTCTGATGGTGTTAC
CTATGGGGACCAGTGCCAGCTGAAGACCATTGCGTGCCGGCAGGGACAGCTCATCACAGTGAAACACGTGGGGCAATGC
CACGAGTCTATAACTCACACGAGCCATACGATGCCACCCACCCCTCTGCCCACCTTGCCCTTGGACAAGCTCATCGTAC
CCCCACCACTGCAGCTGACCACCCAGGCTCCAGAGCCCACTGAGCTGGCCACCACCTCCCTGCTGATGGAAGCCAGCCC
CACTACAAGAAGTCACCCTACAACAAGGCGTGTCACAACGACCCGACCTGTCACCACACCATGGATGACCCATGGAGTG
CTGAAGACCACCGTCCGCCCACTCTCCACCTCTCCAGTGGTCCTGGCCACCACTCAGCCTCCCTACGCTGAATCGGGCA
GTGCAGAAGGCAGTGGGGACCAGGAGATGAGCATCAGTGGGGACCAGGAATCCAGTGGGGCAGGCTCTGCTGGGGAAGA
GGAGGTGGAGGAAAGCCAGGTAACCCCAACTCCAGCCATTGAGAGGGCAACGTGCTACAACACCCCACTCGGGTGCTGC
TCTGATGGCAAGACTGCAGCTGCTGATGCAGAAGGGAGCAACTGTCCGGCTACCAAAGTCTTCCAAGGAGTCCTCATCT
TGGAGGAGGTGGAAGGCCAGGAGCTGTTCTACACACCTGAGATGGCTGACCCCAAGTCAGAGCTCTTCGGGGAGACAGC
CAGGAGCATCGAGAGCGCACTGGACGAGCTTTTCCGAAATTCTGATGTTAAGAATGATTTCAAGAGCATCCGTGTCCGA
GACCTGGGGCAGAGCAGCGCTGTCCGTGTCATTGTGGAGTCCCACTTTGACCCAGCCACTTCCTACACAGCAGCTGACG
TTCAGGCGGCCCTGCTGAAGCAGATCAGAGCCTCCAAGAAGAGGACCATCCTGGTGAAGAAGCCCCAGCAGGAGCATGT
CAAATTCATGGACTTCGACTGGATCCCCAGGATCTTCACCACCACCATCACCACCACCACGGCCACCACCATGGCACCT
GCCACCACACGGAGGCACACCACAGCCTCTGCTGCCACCACTGCCCACATCCTGCGCCAGGACACCGTGGGTCACCCCA
GTGCCAAGCTGGCAGCACCTGCAAGCACCAGGAGGCCTACATCCACCCTGCCTACCACCGCCCGGCGCAAACCCACTCG
CCAGCCCCCCAGCACCACCAAGAAGCCCTCACGACCCTGCGACTCACACCCCTGCCTGCATGGTGGCACCTGTGAGGAC
GATGGCAAGGAGTTCACCTGCAGCTGCCCAGCAGGCAAAGGAGGAGCTGTGTGTGAGAAACCCATCAGGTACTTCATCC
CCAGCTTCGGTGGCAAGTCCTACCTGGCCTTCAAGATGATGAAGGCGTACCACACCGTGCGCATCGCCATGGAGTTCAG
GGCCACGGAGCTCAGCGGGCTGCTGCTCTACAACGGGCAGAATCGTGGCAAGGACTTCATCTCCCTGGCGCTGGTGGGC
GGCTTCGTGGAGCTCAGGTTTAACACAGGCTCTGGCACGGGCGTCATCACCAGCAAGGTGCGCGTGGAGCCTGGCAAGT
GGCACCAGCTGGTGGTGAACCGCAACCGCCGCAGCGGCATGCTGGCTGTGGATGGGGAGCCCCACGTCAGTGGGGAGAG
CCCCACGGGTACCGATGGGCTCAACCTCGACACCGACCTCTTTGTTGGAGGAGCTCCCGAGGACCAAATGGCTGTAGTG
GCAGAGCGTACTGCGGCTACGGTTGGCCTGAAGGGCTGCATCCGCCTCCTGGATGTGAACAACCAGATGTACGACCTGA
GGGAGAAAGGCAGCGATGTGCTGTATGGCAGTGGGGTGGGCGAGTGTGGCAACGACCCCTGCCACCCCAACCCCTGCCA
CCATGGGGGCATCTGCCACGTCAAGGAGGCAGAGATGTTCCACTGCGAGTGTCTCCACTCCTACACCGGTCCAACATGT
GCTGATGAGAGGAACCCATGCGATCCAACGCCGTGCCACATCTCTGCCACCTGCCTGGTGCTGCCGGAGGGAGGTGCCA
TGTGTGCCTGTCCCATGGGACGGGAAGGAGAGTTCTGTGAGCGAGTGACGGAGCAGGACCACACCATGCCCTTCCTCCC
AGAGTTCAATGGCTTTTCCTACCTGGAGCTGAACGGGCTGCAGACCTTTGTTCCTGACCTGCAGGACAAAATGTCCATG
GAAGTGGTGTTCCTGGCCAAGAGTCCCAGTGGCATGATCTTCTACAATGGGCAGAAGACAGATGGCAAAGGAGACTTTG
TGTCTCTGGCTTTGCACGACGGCTACCTGGAGTATCGATATGACCTGGGCAAAGGGGCAGCTGTGCTCAGGAGCAAAGA
GCCAGTTCCCCTCAACACCTGGATAAGCGTTTTGTTGGAGAGGAGTGGGCGCAAAGGGGTAATGAGGATCAACAATGGC
GAGAGGGTGATGGGAGAGTCACCGAAATCCCGTAAGGTGCCTCACGCCTTCCTCAACCTGAAGGAGCCATTCTACGTGG
GGGGAGCCCCCGATTTCAGCAAGCTGGCTCGAGCTGCAGCCATCTCCACCAGCTTCTATGGAGCTGTGCAGAGGATCTC
CATCAAAGGGGTTCCCTTGCTGAAGGAGCAGCACATCCGCAGCGCCGTTGAAATCTCCACTTTCCGTGCCCACCCCTGC
ACCCAAAAGCCCAACCCGTGCCAGAATGGAGGCACCTGCAGCCCCCGGTTGGAGAGCTACGAGTGTGCCTGCCAGAGGG
GCTTCTCTGGGGCTCACTGCGAGAAAGTGATCATTGAGAAGGCAGCTGGAGATGCAGAGGCCATTGCATTTGATGGTAG
GACGTACATGGAGTACCACAATGCCGTGACAAAGAGTCCCGACGCATTGGACTACCCTGCTGAGCCCAGCGAGAAGGCT
TTGCAATCCAACCACTTTGAGCTGAGCATCAAAACAGAAGCAACCCAGGGCCTGATCTTGTGGAGTGGGAAGGGGCTGG
AGCGATCCGACTACATCGCCCTCGCCATCGTGGATGGCTTCGTGCAGATGATGTATGACCTGGGCTCCAAGCCAGTCGT
CCTGCGGTCCACAGTCCCCATCAACACCAACCACTGGACCCACATCAAAGCATACAGAGTACAGAGAGAAGGCTCCCTC
CAGGTCGGCAACGAAGCTCCCATCACTGGCTCTTCACCGCTGGGTGCCACACAGCTGGACACGGATGGGGCCCTGTGGC
TGGGGGGAATGGAGCGGCTCAGCGTGGCTCACAAGCTGCCCAAGGCTTACAGCACTGGCTTTATTGGCTGTATAAGGGA
CGTGATTGTCGACCGCCAAGAACTGCATCTGGTGGAGGACGCTTTAAACAACCCCACGATATTACACTGCTCAGCCAAA
TAGACCCCCAGGGACCCTTCCTTCTCCTTCCCTTCCTCCTGCCTATTGCTGTAATTATTTTCTATTTTTGTAAACTTAT
TGCTTTTTATATTTTGGGGGGAGGGGGGAAAGGGAGGGGAGGAACCACCATTTCTGTTGGGTTATTTTGTTCGGTTGCG
GTATATCCAGGTCAGTCAGACTCTAATCGAGCGGCAGCAACAAAGAACAAACCTTGAACCAAGTCTCCAAGAAGTGACA
GAAGAAGTTCCCCATTGCACCTGTGTTGTAAATCTCACTCATACTTGAAGCTTATTTTGGGGTTTGTTTATTTTCCCCT
CTTTTACTTGTGTTCTTGGGTTGTTGTTCACACCATGGGGGGATAAAGGATGCTGGTGCTGGCAAGCCCTGTGGCCTTT
GTGGGTTCACCACTCGCCTATCTCAGGCCCCTGTGTTCACCCCATCTCCCTCCTCCCCCCTTCCTCTCACTATAATTTA
TGTGTGTAAGGATCTCAAGTGCTTTTCTCCTTTGTGCTCTGTTAAATCAGGGATGCCATGCACTGGAAGAGAGACCAAG
GTCTGCTCTGAGCAGGCAGAAAAGCATTGCTCTTTGGTTGTCTTATGCCTGTTTGCTGGACTGAGAGGGGCTGGGGGGG
GGGGGGAAGCGTCGGTTTCTCTGTTGGCTCTCCCCCTCCTCCTCCTCCTCTTGGACACATGCAGAAGCAGCTGTGAAAC
CTCATTTCCATGCTTTGTGTTGACCCAGACTTGTCCTCACCACCTGCTTGCCCTGGCTGCTCTTCCGAGAGCTTCTGTG
CCCCAAACCGTGCACCACTGACAACTTGCAACGTGTCCTCAGGAGCTGGGGGTCCCCTCCTTCCAGCACCGACTGCGAG
GGGTATGGGATTGGGTCCTCTTCTGCTTTAAAGAAACTTCTTGGACCTGTCCTGCCCTGACCCACGTCCATTTTCCAGC
CTCCTGGCACGACTTGCCCTCTGCCTACCACGAGGACGGTTGCAGCGCATCTCTGTAAGCTGGTGTTAGAACCCATGCC
ATGGCAAACGCTCACCGTTTTACCTTTGTCTCCAAGCTTTTGCAACACCCGGTGCAATGCAGGGGCTTCCATGCCGTGA
TCAGAGCTCCTCCAGTGCCATCAGCCATGGCTCCAGCAGGATGGGGTGGGCTGGGAGCCAAGTGGCCAGATGGGAGAGC
TGGGGAGGGGTTTTTTTTAAAGTGTTGTCTTTCCTGCCTTTGAAGTGTTGTCTTCCTCCATTCGAGTCTTGAAAGCAAA
ATGTCAGCTGCACAGCCACGGTGTGTGTGAGCGTGTGTGGATGTGTGCAAACACTGGGTCTCCCCAAAGCAAAAACAAA
GGGATTGCAGCTCTGAGCACTGCAACTCAGGTTCCTTCTCCATGGGAAGAGCTCCCTGCTGCCACATGGCATCTGTCAC
CACTGGGCCACCACGGTGTCCCCATCCCACCCTGCGAAGGCAGCTGGCAGTGCTTTGTGGCCAACTGCCTTATGGAGCA
TGCAGAATGGGTTGGAAGGGTCCAGCTGGCTGTCAGGTGTTCCCTGACATCCCGGGGGCTGTCGGCTTGTGGTTTCACA
CCGATTCCTATCTCACCTTCTGCTGTACCCTTCCAAAATGCTCTTTCTGAGCACTGAGCTTTCAGCCACGAGAAGTCGG
GGGGCTTTTCTCAGGGCGAGCTCTGAATGCAGACCTAATCAATGGGGACGGCACCATGGCAATCCACTCTGACTGCCTC
TTGCTTTTTGCTCCTTGCCCAAGCAAGGAAGAGCCCCATTGCCTACCCCAACCCGTGGAAGTCAACTCTTGATCTATCA
TCATGCCCCAAAAACCCAATGGTTATGTCTTTCAGGGAAGATGGTGAGAAGTGGAGGCTCCAGTGTTTGTGTGTGTGGC
AATAGCACGTGTTGAGTGGCTGCTGTATATAACGTGTGGGTCCTGGGGGTGATGGCTGCGTTGGGGCTTCCAGCTGGAT
GTCATGGCCACCCCACTGAGACCAATGGGGAGCGTGCCAGCTCCAGTGGGAAAGGGCGCCATGGAGGAAGCTGCTCAAT
ATCCAGAATGCCACTGAAATGAAGCCAGGGTCACTG
CitationMa E1, Morgan R, Godfrey EW. Distribution of agrin mRNAs in the chick embryo nervous system. J Neurosci. 1994 May;14(5 Pt 2):2943-52.
CopyrightCopyright © 1994 Society for Neuroscience
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_205527.3). AGRIN is also known as HSPG in NCBI.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 18
Myotome
Notochord
Spinal Cord
 
19-24
stage 23
Peripheral Nervous System
Spinal Cord
Ventricles
 
25-30
stage 26
stage 28
stage 28
stage 30
Retina
Spinal Cord
Telencephalon
Ventricles
 
31-44
stage 35
stage 35
stage 36
stage 36
stage 36
stage 40
stage 40
stage 40
stage 40
stage 44
stage 44
stage 44
stage 44
stage 44
stage 44
stage 44
stage 44
stage 44
Cranial PNS
Diencephalon
Eye
Hindbrain
Metencephalon
Peripheral Nervous System
Retina
Spinal Cord
Ventricles
P3 (3 d posthatching)
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.48948

Mouse

EmageMGI:87961
EurexpressMGI:87961
MGI GXDMGI:87961

Frog

Xenbase953966

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-060922-2, ZDB-GENE-030131-1033
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