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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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ATOH7
atonal bHLH transcription factor 7

Gene

Official Symbol	ATOH7
Official Full Name	atonal bHLH transcription factor 7
CGNC ID	2882
also known as	ATH5, protein atonal homolog 7\|Atonal Homolog 5\|atonal homolog 7\|atonal transcription factor homologue\|cATH5\|helix-loop-helix protein cATH-5\|protein atonal homolog 5
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_204668
Polypeptide	NP_989999

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	220202	ENSG00000179774		MIM:609875
Mouse	53404	ENSMUSG00000036816	All phenotypic alleles (7):Targeted, other(7)	MGI:1355553
Xenopus	100493495, 378577, 378576			989021
Zebrafish	58216	ENSDARG00000069552	ZDB-GENE-000926-1	ZFIN:ZDB-GENE-000926-1

Gene Ontology

Molecular Function	DNA binding, protein dimerization activity
Biological Process	circadian rhythm, entrainment of circadian clock, neural retina development, neuron differentiation, more...
Cellular Component	nucleus

Links to other databases

Entrez Gene	395388
Ensembl Gene	ENSGALG00000003931
KEGG	gga:395388

Entry 1

GEISHA Id	ATOH7.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	CCAGTCATTTGGATTCAGGAGTAG
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGGTGTCTGTTGCCACTTTTTGTCC	cDNA Template Length	378
Forward cDNA Template Probe	show `AAACTTATTTTCGCAAATGGTGGAGCTCTCTGGATGAAGTGTTCCAGTGAAGGTTAATCCATTCTCTTTTATACTGTAT CTCTCTGCTTCAGCAAGTATTCGTGTTAGAGCCATGATATAACTCAAAGCCATCTGAAGGGTCTCATATTTGGAGAGCT TCTTATCTTGACCCCACTGTGGAACCACCTTCCTCAAACGATCAAAGGGTGTGTTCAGTCCTTGCATCCGTCTTCTCTC CCTGGGGTTGGCAGCCAGTCTTCTCTTGGCAGCGCTCTCCATTCTTTCTGTGCTGCACTTCACAACACAGCCTGATCTT CTTCTGGGCTGGATGTCTCATTCTACGCCTAATAATAAGAGGACTGGA`
Comments	No expression detected at or before stage 6.

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 6

Extraembryonic Mesoderm
Headfold

7-12

stage 8

stage 11

Extraembryonic
Extraembryonic Mesoderm
Headfold
Heart
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube

13-18

stage 17

Eye
Head Mesenchyme

19-24

stage 20

stage 21

Eye

stage 25

Eye
Head Mesenchyme
Trunk Mesenchyme

Entry 2

GEISHA Id	ATH5.Ma.2008	Data Source	Publication
Complete cDNA Template Probe	show TCTAGATTTGCATTCACATAAATATGCATGTATACATTACACAGTGCGTATTAAAAAGGATAGTTTTCAGACTATTTGT ACTGGCGTGTCTGTATCACAAGCTCTCCAAATACTTTAAAAATTATTAGATAAATCCATAGCTACATTTTAACTGTTTA AACTTGTTCTGAATAATTTTCATAACGTTGCTGACATGCAAATGTATAATCTCAGTTTTCCTCGAGACACTGCTCTCTT CTCAGTGGTCTGTACTTTAGTCCTACAAGATTCCTGATAATTTGAGTCTGTTTGCTTCAGTATTGTATAGTGAAGCACA GTACTATTCTCTGCCATGCATCACCAAGCTAATTCTCCTCTGTTTTGTCGGAACAATTATTTTTTACTCCTAATTCTAC CTACCAGAATTTTCAGATATTTTAAAGTGCAAATGCTACAATGCACAGTGAGAGTTATATATATTTTTTTCTCCTGAGT TGCAACAGATTATCAATTGAAAGGATCTTTTGCTTAAGTGCCCAGAGTCTAGCGGGGCCAGCCAGACACGGCTCCAGAT GGCAAGTTGTTAGGGCTGGACAGAATGGCTTTGGAAGACTTCTCAACAGATGAAGGCTGTAATGTTCGGGTTTTACTGT TGCTTCTTTTTTTTTTTTTTTTTTTGTCCCCCTGTGGTTCCCAGGCTGGGAAGGTACTGGGATGGAAGCAGAGTGCCGC CCGCCCACCTGCTACCACCTGTTTAGCCTTAGCAATTTCTATAAAGCCTCTTCGAGTCTGTAAGACACAATCATTGCTT ACCGACGGCAGTCAAGAAGGAGAGATTTCTGTTACCAAGTTATGTCTTCAGATCGCAACAGTTCATCGTATCAAAACGT CCTCCTAAACTGAATCAGAACTCCTTCCAAGTGAAATGTCCATTGGAATGGATGTCTTTTTAATCCATTAATATTCTTT CTGGCTTAAAAGGACCATTTTCTTCACAAACTCATGTTTTGAGAATGGAGATTTCATTATTTTCTGTCTTTGAGTTTAC AGAAATAAGAAGAATGAAAGCATAAGGCATTGAGAACTCTTTATTTTTTTCATTAAAAAATAAGCAATTTTCAGACACT TCCAGAAAAGCCAGAAGAGTTTTTTATTTTTTTATTTTTTATGCGAAGATAAATATCTCATCAACAACATCTGGAAAAA GATTCAAGAGGTACGCAGGCTACTTATAGGAGTGCTTTCTCTACAGCTGTTCAGACACTTCATTTTTAAAGTGTAATTT TTTCTGTATGCGTGTGAAGCTGCATCTGCAATAGATATGAAAACCTGTCAATCCAGTCATTTGGATTCAGGAGTAGAAT CAGACATCCAGTGCAGAAGTGGATCAGGCTGTGTTGTGAAGTGCAGCACAGAAAGAATGGAGAGCGCTGCCAAGAGAAG ACTGGCTGCCAACGCCAGGGAGAGAAGACGGATGCAAGGACTGAACACAGCCTTTGATCGTTTGAGGAAGGTGGTTCCA CAGTGGGGTCAAGATAAGAAGCTCTCCAAATATGAGACCCTTCAGATGGCTTTGAGTTATATCATGGCTCTAACACGAA TACTTGCTGAAGCAGAGAGATACAGTACTGAAAGAGAATGGATTAACCTTCACTGTGAACACTTTCATCCAGAGAGCTA CCACCATTATACGGGACAAAAAGTGGCAACAGACAGTGATCCTTATGCACAGCGAATATTCAGCTATCACCCTGAACAC TTTCAAATAGCTAATTAGAACTTATTACGAGCTAAAAAA
Citation	Ma W, Yan RT, Mao W, Wang SZ. Neurogenin3 promotes early retinal neurogenesis. Mol Cell Neurosci. 2009 Feb;40(2):187-98. Epub 2008 Nov 6.
Copyright	Copyright © 2008 Elsevier Inc. All rights reserved.
Comments	As insufficient information is provided in the publication to verify the exact sequence used to synthesize the probe, the sequence below was obtained from NCBI (acc #NM_204668).

Stage

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Location (click to highlight)

Comments (click to highlight)

13-18

stage 13

stage 18

Retina

31-32

stage 32

Retina

Entry 3

GEISHA Id	ATH5.Heine.2008	Data Source	Publication
Complete cDNA Template Probe	show ATTCAAGAGGTACGCAGGCTACTTATAGGAGTGCTTTCTCTACAGCTGTTCAGACACTTCATTTTTAAAGTGTAATTTT TTCTGTATGCGTGTGAAGCTGCATCTGCAATAGATATGAAAACCTGTCAATCCAGTCATTTGGATTCAGGAGTAGAATC AGACATCCAGTGCAGAAGTGGATCAGGCTGTGTTGTGAAGTGCAGCACAGAAAGAATGGAGAGCGCTGCCAAGAGAAGA CTGGCTGCCAACGCCAGGGAGAGAAGACGGATGCAAGGACTGAACACAGCCTTTGATCGTTTGAGGAAGGTGGTTCCAC AGTGGGGTCAAGATAAGAAGCTCTCCAAATATGAGACCCTTCAGATGGCTTTGAGTTATATCATGGCTCTAACACGAAT ACTTGCTGAAGCAGAGAGATACAGTACTGAAAGAGAATGGATTAACCTTCACTGTGAACACTTTCATCCAGAGAGCTAC CACCATTATACGGGACAAAAAGTGGCAACAGACAGTGATCCTTATGCACAGCGAATATTCAGCTATCACCCTGAACACT TTCAAATAGCTAATTAGAACTTATTACGAGCTAAAAATATGCAGCAGGCCAGATGTGTAATTTAATAATTAGCAAGAGT TAATCTGCTTGAATAAGGTAATATTGGCATTACAAT
Citation	Heine P, Dohle E, Bumsted-O'Brien K, Engelkamp D, Schulte D. Evidence for an evolutionary conserved role of homothorax/Meis1/2 during vertebrate retina development. Development. 2008 Mar;135(5):805-11. doi: 10.1242/dev.012088. Epub 2008 Jan 23.
Copyright	Copyright held by the authors. Published by the Company of Biologists Ltd.