GEISHA - A Chicken Embryo Gene Expression Database
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ATOH7
atonal bHLH transcription factor 7

Gene
Official SymbolATOH7
Official Full Nameatonal bHLH transcription factor 7
CGNC ID2882
also known asATH5, protein atonal homolog 7|Atonal Homolog 5|atonal homolog 7|atonal transcription factor homologue|cATH5|helix-loop-helix protein cATH-5|protein atonal homolog 5
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204668
PolypeptideNP_989999
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.199
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human220202ENSG00000179774MIM:609875
Mouse53404ENSMUSG00000036816All phenotypic alleles (7):Targeted, other(7) MGI:1355553
Xenopus100493495, 378577, 378576989021
Zebrafish58216ENSDARG00000069552ZDB-GENE-000926-1ZFIN:ZDB-GENE-000926-1
Gene Ontology
Molecular FunctionDNA binding, protein dimerization activity
Biological Processcircadian rhythm, entrainment of circadian clock, neural retina development, neuron differentiation, more...neuron fate commitment, regulation of transcription, DNA-templated, transcription, DNA-templated
Cellular Componentnucleus
Links to other databases
Entrez Gene395388
Ensembl GeneENSGALG00000003931
KEGGgga:395388

Entry 1

GEISHA IdATOH7.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerCCAGTCATTTGGATTCAGGAGTAG
Reverse cDNA Template PrimerAATTAACCCTCACTAAAGGTGTCTGTTGCCACTTTTTGTCCcDNA Template Length378
Forward cDNA Template Probeshow
AAACTTATTTTCGCAAATGGTGGAGCTCTCTGGATGAAGTGTTCCAGTGAAGGTTAATCCATTCTCTTTTATACTGTAT
CTCTCTGCTTCAGCAAGTATTCGTGTTAGAGCCATGATATAACTCAAAGCCATCTGAAGGGTCTCATATTTGGAGAGCT
TCTTATCTTGACCCCACTGTGGAACCACCTTCCTCAAACGATCAAAGGGTGTGTTCAGTCCTTGCATCCGTCTTCTCTC
CCTGGGGTTGGCAGCCAGTCTTCTCTTGGCAGCGCTCTCCATTCTTTCTGTGCTGCACTTCACAACACAGCCTGATCTT
CTTCTGGGCTGGATGTCTCATTCTACGCCTAATAATAAGAGGACTGGA
CommentsNo expression detected at or before stage 6.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 6
Extraembryonic Mesoderm
Headfold
 
7-12
stage 8
stage 8
stage 8
stage 11
stage 11
Extraembryonic
Extraembryonic Mesoderm
Headfold
Heart
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
 
13-18
stage 17
Eye
Head Mesenchyme
 
19-24
stage 20
stage 21
Eye
 
25
stage 25
Eye
Head Mesenchyme
Trunk Mesenchyme
 

Entry 2

GEISHA IdATH5.Ma.2008Data SourcePublication
Complete cDNA Template Probeshow
TCTAGATTTGCATTCACATAAATATGCATGTATACATTACACAGTGCGTATTAAAAAGGATAGTTTTCAGACTATTTGT
ACTGGCGTGTCTGTATCACAAGCTCTCCAAATACTTTAAAAATTATTAGATAAATCCATAGCTACATTTTAACTGTTTA
AACTTGTTCTGAATAATTTTCATAACGTTGCTGACATGCAAATGTATAATCTCAGTTTTCCTCGAGACACTGCTCTCTT
CTCAGTGGTCTGTACTTTAGTCCTACAAGATTCCTGATAATTTGAGTCTGTTTGCTTCAGTATTGTATAGTGAAGCACA
GTACTATTCTCTGCCATGCATCACCAAGCTAATTCTCCTCTGTTTTGTCGGAACAATTATTTTTTACTCCTAATTCTAC
CTACCAGAATTTTCAGATATTTTAAAGTGCAAATGCTACAATGCACAGTGAGAGTTATATATATTTTTTTCTCCTGAGT
TGCAACAGATTATCAATTGAAAGGATCTTTTGCTTAAGTGCCCAGAGTCTAGCGGGGCCAGCCAGACACGGCTCCAGAT
GGCAAGTTGTTAGGGCTGGACAGAATGGCTTTGGAAGACTTCTCAACAGATGAAGGCTGTAATGTTCGGGTTTTACTGT
TGCTTCTTTTTTTTTTTTTTTTTTTGTCCCCCTGTGGTTCCCAGGCTGGGAAGGTACTGGGATGGAAGCAGAGTGCCGC
CCGCCCACCTGCTACCACCTGTTTAGCCTTAGCAATTTCTATAAAGCCTCTTCGAGTCTGTAAGACACAATCATTGCTT
ACCGACGGCAGTCAAGAAGGAGAGATTTCTGTTACCAAGTTATGTCTTCAGATCGCAACAGTTCATCGTATCAAAACGT
CCTCCTAAACTGAATCAGAACTCCTTCCAAGTGAAATGTCCATTGGAATGGATGTCTTTTTAATCCATTAATATTCTTT
CTGGCTTAAAAGGACCATTTTCTTCACAAACTCATGTTTTGAGAATGGAGATTTCATTATTTTCTGTCTTTGAGTTTAC
AGAAATAAGAAGAATGAAAGCATAAGGCATTGAGAACTCTTTATTTTTTTCATTAAAAAATAAGCAATTTTCAGACACT
TCCAGAAAAGCCAGAAGAGTTTTTTATTTTTTTATTTTTTATGCGAAGATAAATATCTCATCAACAACATCTGGAAAAA
GATTCAAGAGGTACGCAGGCTACTTATAGGAGTGCTTTCTCTACAGCTGTTCAGACACTTCATTTTTAAAGTGTAATTT
TTTCTGTATGCGTGTGAAGCTGCATCTGCAATAGATATGAAAACCTGTCAATCCAGTCATTTGGATTCAGGAGTAGAAT
CAGACATCCAGTGCAGAAGTGGATCAGGCTGTGTTGTGAAGTGCAGCACAGAAAGAATGGAGAGCGCTGCCAAGAGAAG
ACTGGCTGCCAACGCCAGGGAGAGAAGACGGATGCAAGGACTGAACACAGCCTTTGATCGTTTGAGGAAGGTGGTTCCA
CAGTGGGGTCAAGATAAGAAGCTCTCCAAATATGAGACCCTTCAGATGGCTTTGAGTTATATCATGGCTCTAACACGAA
TACTTGCTGAAGCAGAGAGATACAGTACTGAAAGAGAATGGATTAACCTTCACTGTGAACACTTTCATCCAGAGAGCTA
CCACCATTATACGGGACAAAAAGTGGCAACAGACAGTGATCCTTATGCACAGCGAATATTCAGCTATCACCCTGAACAC
TTTCAAATAGCTAATTAGAACTTATTACGAGCTAAAAAA
CitationMa W, Yan RT, Mao W, Wang SZ. Neurogenin3 promotes early retinal neurogenesis. Mol Cell Neurosci. 2009 Feb;40(2):187-98. Epub 2008 Nov 6.
CopyrightCopyright © 2008 Elsevier Inc. All rights reserved.
CommentsAs insufficient information is provided in the publication to verify the exact sequence used to synthesize the probe, the sequence below was obtained from NCBI (acc #NM_204668).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 13
stage 13
stage 18
Retina
 
31-32
stage 32
stage 32
stage 32
stage 32
Retina
 

Entry 3

GEISHA IdATH5.Heine.2008Data SourcePublication
Complete cDNA Template Probeshow
ATTCAAGAGGTACGCAGGCTACTTATAGGAGTGCTTTCTCTACAGCTGTTCAGACACTTCATTTTTAAAGTGTAATTTT
TTCTGTATGCGTGTGAAGCTGCATCTGCAATAGATATGAAAACCTGTCAATCCAGTCATTTGGATTCAGGAGTAGAATC
AGACATCCAGTGCAGAAGTGGATCAGGCTGTGTTGTGAAGTGCAGCACAGAAAGAATGGAGAGCGCTGCCAAGAGAAGA
CTGGCTGCCAACGCCAGGGAGAGAAGACGGATGCAAGGACTGAACACAGCCTTTGATCGTTTGAGGAAGGTGGTTCCAC
AGTGGGGTCAAGATAAGAAGCTCTCCAAATATGAGACCCTTCAGATGGCTTTGAGTTATATCATGGCTCTAACACGAAT
ACTTGCTGAAGCAGAGAGATACAGTACTGAAAGAGAATGGATTAACCTTCACTGTGAACACTTTCATCCAGAGAGCTAC
CACCATTATACGGGACAAAAAGTGGCAACAGACAGTGATCCTTATGCACAGCGAATATTCAGCTATCACCCTGAACACT
TTCAAATAGCTAATTAGAACTTATTACGAGCTAAAAATATGCAGCAGGCCAGATGTGTAATTTAATAATTAGCAAGAGT
TAATCTGCTTGAATAAGGTAATATTGGCATTACAAT
CitationHeine P, Dohle E, Bumsted-O'Brien K, Engelkamp D, Schulte D. Evidence for an evolutionary conserved role of homothorax/Meis1/2 during vertebrate retina development. Development. 2008 Mar;135(5):805-11. doi: 10.1242/dev.012088. Epub 2008 Jan 23.
CopyrightCopyright held by the authors. Published by the Company of Biologists Ltd.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19
stage 19
stage 19
Retina
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.199

Mouse

EmageMGI:1355553
EurexpressMGI:1355553
MGI GXDMGI:1355553

Frog

Xenbase989021

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-000926-1
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