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A chicken embryo gene expression database 		 
GEISHA - A Chicken Embryo Gene Expression Database
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Gene Expression Report

Probe 1

GEISHA IdAct-RIIa.Levin.1995
 NCBIEnsembl
Gene NameACVR2A 
Aliasesactivin receptor IIA, ACVR2A, activin A receptor, type IIA, Official 
Gene Descriptionactivin A receptor, type IIA 
Gene Ontologyshow
GO:0000166 nucleotide binding IEA
GO:0000287 magnesium ion binding IEA
GO:0004702 receptor signaling protein serine/threonine kinase activity IEA
GO:0004872 receptor activity IEA
GO:0005524 ATP binding IEA
GO:0006468 protein amino acid phosphorylation IEA
GO:0016020 membrane IEA
GO:0016021 integral to membrane IEA
GO:0016740 transferase activity IEA
GO:0017002 activin receptor activity IEA
GO:0030145 manganese ion binding IEA
GO:0032924 activin receptor signaling pathway IEA
Ensembl Genome Map
contig view
CitationLevin M, Johnson RL, Stern CD, Kuehn M, Tabin C (1995). A molecular pathway determining left-right asymmetry in chick embryogenesis. Cell. 1995 Sep 8;82(5):803-14.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_205367).
Complete Sequenceshow
CCGAGCTGCCGGTTGGACTCGGGAGACTCTAGAGACGGCTCCAGCCACCACCGCCCAGAGACAAAAACCGGGCTCGGCC
TTTTCTCCTCGCCAACCCCCAAACTGCACTCCTGGAGGGACAAAGTTGGTGTCCGCCGCTCTGCCTCGCCGCGCGGGAG
ACGGGAGAGCCGCGCCGCGCTCCGTGCGGGCCGGGCGTGAGGCGGGCTGAGAGCTAAGGGCGGCCGGGCTGCGTGCCCC
GGGCCGGGCAGACGCGAGGGCGGCACGAGGGGAGCGGCGGCGGAGGGCTTCTCCTTCTCGCCCCTGCTGCTCGGCGTTC
GCGTTCTTCTGCCTTTTCTTTTTTGTTGTTTGTTTGTTTGTTTGTTTTCCCCTCAGAGAATCAGAAGCGGGCGGGGCGA
TGTGCCCGGGGGCTGCCGGGGGAAGGGGCCTGCGGGCGGCCGGGCAGCCGTGAGCGGCCCCGTGGAGCGCAGCCACCCA
GCGCCGGGAGCCTGCCTGGCCTCGCGGTTGTTTTTCTCTCTTGCTCTTGTTTTTGTTTTTTTTTTTTTCTTTCCTTCAG
TCTGCGTTTAAATACCAAATTGAGTCTCGAGGGAGCGGGGTGGGGGGCATGGAAGCGTCGTAGAGGGGAATCGTAAAGC
GCGGTTCCCGGAGCGGAGCCTCAGCCCGCGGCCCCTCCGCGTTGCTGCACGGACTGACGGAGCGCTGCCCGCCGCTCTC
CCCGGAGCTGCCATGGAGCCGCCGCGCTGCCCGCGCCCCGCGCTGCCTAACGGGAGCCGGGAGCCGATCCGCCGTGTGC
TGATCTACCGCGGGGAAACGCCGTGCACGTTCATGTGGGAGAGCCGGAGTGCGCGCACACACTGCCTCGTGCCCGGCGG
CTCCGCTTGACTTCATCTTCCTTCGTTTCCCGTGGATCCGTAGCGTACTTTTCTGAATTAAATCCTGCCGCTGTTTGTA
CAGAAGCCAAATGACACGTGTGTTTTGAAACACTGCTGCGAATAGTTCGAGCCCCGAACCCGGATTCTCGCTAAGAAGA
GACCGTCGGTCTCCGAACGGCCCCGATTTTACTGTTTGGTGAACACTATCTCCGGAGAAGTTGCTATAGATTGCTTTAT
AACGGTTCCGCAAGAAGGGGGGGATTTTCCGGCTTGCAGGACTCAAGAAACTGGATGCTAAAAGTCATTTAAATGTTCT
AACAGCATTGGAAAATGGGAGCTGCTACGAAGTTAGCGTTCGCTGTTTTTCTCATCTCGTGTTCTTCAGGTGCCATTCT
TGGCAGATCAGAAACACAAGAATGCATCTACTACAACGCTAATTGGGAGAAAGATAAAACAAATCGCAGTGGCATTGAA
CCCTGTTATGGAGATAAAGATAAAAGACGACACTGTTTTGCTACATGGAAGAATATTTCTGGATCAATTGAAATCGTGA
AACAAGGTTGCTGGCTGGATGACATCAACTGTTACGACAGGAATGATTGCATTGAGAAAAAAGACAGCCCTGAAGTGTT
CTTCTGTTGTTGTGAAGGCAACATGTGTAATGAACGCTTCTTCTATTTTCCAGAAATGGAGGTCACACAGCCAACTTCC
AATCCAGTCACACCGAAGCCACCTCTATTCAATACCTTGCTTTATTCATTGGTGCCTATAATGGGAATTGCAGTGATTG
TGCTCTTTTCATTTTGGATGTACAGACATCACAAGCTAGCATATCCTCCAGTACTTGTTCCAACCCAAGATCCTGGACC
ACCACCGCCTTCACCATTGATGGGTTTGAAGCCACTGCAGTTGCTAGAGATCAAAGCCAGGGGACGATTTGGGTGTGTG
TGGAAAGCTCAGCTGCTGAATGAGTATGTTGCAGTCAAAATATTCCCTATCCAGGACAAACAGTCGTGGCAGAATGAAT
ATGAAATTTACAGCCTACCTGGAATGAAGCATGACAATATTTTACAGTTCATCGGTGCAGAGAAGCGAGGCACCAGCAT
TGATGTGGACCTCTGGTTAATTACAGCTTTTCACGAAAAGGGTTCATTAACTGACTTCCTCAAGGCTAACGTGGTTTCC
TGGAATGAGCTGTGTCACATTGCTCAGACTATGGCTCGAGGCTTGGCTTATCTCCATGAGGATATACCAGGGCTAAAAG
ACGGACATAAACCCGCCATCTCACACAGGGACATCAAAAGCAAGAATGTGCTGCTGAAAAACAACCTTACAGCTTGCAT
TGCTGATTTTGGTCTAGCTTTAAAGTTTGAGGCTGGAAAATCTGCAGGAGATACACATGGACAGGTTGGCACACGAAGG
TACATGGCTCCTGAGGTACTAGAAGGTGCTATAAACTTCCAAAGGGATGCGTTTTTGAGAATAGACATGTATGCCATGG
GCTTGGTCCTCTGGGAGCTGGCATCGCGCTGCACTGCCTCAGATGGCCCAGTAGATGAGTACATGTTGCCATTTGAAGA
AGAAATTGGCCAGCATCCTTCCCTTGAAGACATGCAGGAAGTTGTGGTTCATAAAAAGAAGAGACCTGTTTTAAGAGAG
TGTTGGCAAAAGCATTCTGGAATGGCGATGCTCTGTGAAACCATCGAGGAGTGCTGGGATCACGACGCAGAAGCCAGGC
TGTCGGCGGGGTGCGTAGAAGAACGCATTATTCAGATGCAAAAATTAACTAACATTATAACAACAGAGGACATTGTGAC
TGTGGTCACGATGGTGACAAACGTTGACTTTCCTCCCAAAGAATCCAGTCTATGATAGTTGCACTGGTCACGTAACTGA
CCAACGGGACTCTTCACTGGAGCTGCTAAAGCTAACGGGACTGCTGTCGTCATTGTGTTCTGTGTGAAGCGACCGCGGG
GTCTCTGGGAGCATCGTCAGGAGGTGTTTCCCTTTCTGCTCCCCCTCCTCCTCCCACACACGAATCCATGAGACTTTCT
GCATTCCCTGCTTACGCCGGAAGCGCGCGTGCTGAGAGGTGGCAGTGGGCCGTTCAGGGCCTGAAGCAAAGAGCGGACC
TGGACGGGCTAACTGAGCGTTTTAAAAACTGACATCAGATTTCTTAATAGCCGTCAGAAGAGACTAATTCCTTAAATGA
ACTACTGTTATTTTTTTTAAATCAAACATTT
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-30
stage 4
stage 4
stage 4
stage 4

Hensen's Node

Primitive Streak

Stage 3+

31-44
stage 44
stage 44
stage 44

Hensen's Node

Primitive Streak

 

Probe 2

GEISHA IdACTRIIA.McCabe.2007
 NCBIEnsembl
Gene NameACVR2AAVR2A_CHICK
Aliasesactivin receptor IIA, ACVR2A, activin A receptor, type IIA, Official 
Gene Descriptionactivin A receptor, type IIAActivin receptor type-2A precursor (EC 2.7.11.30) (Activin receptor type IIA) (ACTR-IIA) (ACTRIIA). [Source:Uniprot/SWISSPROT;Acc:Q90669]
Gene Ontologyshow
GO:0000166 nucleotide binding IEA
GO:0000287 magnesium ion binding IEA
GO:0004702 receptor signaling protein serine/threonine kinase activity IEA
GO:0004872 receptor activity IEA
GO:0005524 ATP binding IEA
GO:0006468 protein amino acid phosphorylation IEA
GO:0016020 membrane IEA
GO:0016021 integral to membrane IEA
GO:0016740 transferase activity IEA
GO:0017002 activin receptor activity IEA
GO:0030145 manganese ion binding IEA
GO:0032924 activin receptor signaling pathway IEA
show
GO:0000166 nucleotide binding IEA
GO:0000287 magnesium ion binding IEA
GO:0001702 gastrulation with mouth forming second IEA
GO:0004672 protein kinase activity IEA
GO:0004674 protein serine/threonine kinase activity IEA
GO:0004675 transmembrane receptor protein serine/threonine kinase activity IEA
GO:0004702 receptor signaling protein serine/threonine kinase activity IEA
GO:0004872 receptor activity IEA
GO:0005024 transforming growth factor beta receptor activity IEA
GO:0005524 ATP binding IEA
GO:0005737 cytoplasm IEA
GO:0006468 protein amino acid phosphorylation IEA
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway IEA
GO:0007283 spermatogenesis IEA
GO:0007368 determination of left/right symmetry IEA
GO:0007498 mesoderm development IEA
GO:0008584 male gonad development IEA
GO:0009952 anterior/posterior pattern formation IEA
GO:0016020 membrane IEA
GO:0016021 integral to membrane IEA
GO:0016301 kinase activity IEA
GO:0016740 transferase activity IEA
GO:0017002 activin receptor activity IEA
GO:0019838 growth factor binding IEA
GO:0030145 manganese ion binding IEA
GO:0032927 positive regulation of activin receptor signaling pathway IEA
GO:0042713 sperm ejaculation IEA
GO:0043084 penile erection IEA
GO:0043621 protein self-association IEA
GO:0045648 positive regulation of erythrocyte differentiation IEA
GO:0046872 metal ion binding IEA
GO:0048185 activin binding IEA
GO:0048186 inhibin beta-A binding IEA
GO:0048706 embryonic skeletal development IEA
GO:0050999 regulation of nitric-oxide synthase activity IEA
GO:0060011 Sertoli cell proliferation IEA
NCBI Nucleotide HitNM_205367 show details
scoreevaluealignment lengthdescription
5080.0508Gallus gallus activin A receptor, type IIA (ACVR2A), mRNA
Ensembl Genome Map
contig view
CitationMcCabe KL, Shiau CE, Bronner-Fraser M. Identification of candidate secreted factors involved in trigeminal placode induction. Dev Dyn. 2007 Oct;236(10):2925-35.
CopyrightCopyright © 2007 Wiley-Liss, Inc.
CommentsSequence below was obtained from NCBI (NM_205367) using the primers given in the publication: ACTRIIA forward primer, 5'-ACACGAAGGTACATGGCTCC-3'; and reverse primer, 5'-CAGCTCCAGTGAAGAGTCCC-3'.
Complete Sequenceshow
ACACGAAGGTACATGGCTCCTGAGGTACTAGAAGGTGCTATAAACTTCCAAAGGGATGCGTTTTTGAGAATAGACATGT
ATGCCATGGGCTTGGTCCTCTGGGAGCTGGCATCGCGCTGCACTGCCTCAGATGGCCCAGTAGATGAGTACATGTTGCC
ATTTGAAGAAGAAATTGGCCAGCATCCTTCCCTTGAAGACATGCAGGAAGTTGTGGTTCATAAAAAGAAGAGACCTGTT
TTAAGAGAGTGTTGGCAAAAGCATTCTGGAATGGCGATGCTCTGTGAAACCATCGAGGAGTGCTGGGATCACGACGCAG
AAGCCAGGCTGTCGGCGGGGTGCGTAGAAGAACGCATTATTCAGATGCAAAAATTAACTAACATTATAACAACAGAGGA
CATTGTGACTGTGGTCACGATGGTGACAAACGTTGACTTTCCTCCCAAAGAATCCAGTCTATGATAGTTGCACTGGTCA
CGTAACTGACCAACGGGACTCTTCACTGGAGCTG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-10
stage 8
stage 10

Neural Plate/Tube

Placcode

Neural Folds

Trigeminal Placode

Probe 3

GEISHA IdActR-IIA.Stern.1995
 NCBIEnsembl
Gene NameACVR2A 
Aliasesactivin receptor IIA, ACVR2A, activin A receptor, type IIA, Official 
Gene Descriptionactivin A receptor, type IIA 
Gene Ontologyshow
GO:0000166 nucleotide binding IEA
GO:0000287 magnesium ion binding IEA
GO:0004702 receptor signaling protein serine/threonine kinase activity IEA
GO:0004872 receptor activity IEA
GO:0005524 ATP binding IEA
GO:0006468 protein amino acid phosphorylation IEA
GO:0016020 membrane IEA
GO:0016021 integral to membrane IEA
GO:0016740 transferase activity IEA
GO:0017002 activin receptor activity IEA
GO:0030145 manganese ion binding IEA
GO:0032924 activin receptor signaling pathway IEA
Ensembl Genome Map
contig view
CitationStern CD, Yu RT, Kakizuka A, Kintner CR, Mathews LS, Vale WW, Evans RM, Umesono K (1995). Activin and its receptors during gastrulation and the later phases of mesoderm development in the chick embryo. Dev Biol. 1995 Nov;172(1):192-205.
Copyright"Reprinted from Dev Biol, 172(1), Stern CD, Yu RT, Kakizuka A, Kintner CR, Mathews LS, Vale WW, Evans RM, Umesono K, Activin and its receptors during gastrulation and the later phases of mesoderm development in the chick embryo, 192-205, Copyright (1995), with permission from Copyright © 1995 UBC Press". All rights reserved.
Complete Sequenceshow
CCGAGCTGCCGGTTGGACTCGGGAGACTCTAGAGACGGCTCCAGCCACCACCGCCCAGAGACAAAAACCGGGCTCGGCC
TTTTCTCCTCGCCAACCCCCAAACTGCACTCCTGGAGGGACAAAGTTGGTGTCCGCCGCTCTGCCTCGCCGCGCGGGAG
ACGGGAGAGCCGCGCCGCGCTCCGTGCGGGCCGGGCGTGAGGCGGGCTGAGAGCTAAGGGCGGCCGGGCTGCGTGCCCC
GGGCCGGGCAGACGCGAGGGCGGCACGAGGGGAGCGGCGGCGGAGGGCTTCTCCTTCTCGCCCCTGCTGCTCGGCGTTC
GCGTTCTTCTGCCTTTTCTTTTTTGTTGTTTGTTTGTTTGTTTGTTTTCCCCTCAGAGAATCAGAAGCGGGCGGGGCGA
TGTGCCCGGGGGCTGCCGGGGGAAGGGGCCTGCGGGCGGCCGGGCAGCCGTGAGCGGCCCCGTGGAGCGCAGCCACCCA
GCGCCGGGAGCCTGCCTGGCCTCGCGGTTGTTTTTCTCTCTTGCTCTTGTTTTTGTTTTTTTTTTTTTCTTTCCTTCAG
TCTGCGTTTAAATACCAAATTGAGTCTCGAGGGAGCGGGGTGGGGGGCATGGAAGCGTCGTAGAGGGGAATCGTAAAGC
GCGGTTCCCGGAGCGGAGCCTCAGCCCGCGGCCCCTCCGCGTTGCTGCACGGACTGACGGAGCGCTGCCCGCCGCTCTC
CCCGGAGCTGCCATGGAGCCGCCGCGCTGCCCGCGCCCCGCGCTGCCTAACGGGAGCCGGGAGCCGATCCGCCGTGTGC
TGATCTACCGCGGGGAAACGCCGTGCACGTTCATGTGGGAGAGCCGGAGTGCGCGCACACACTGCCTCGTGCCCGGCGG
CTCCGCTTGACTTCATCTTCCTTCGTTTCCCGTGGATCCGTAGCGTACTTTTCTGAATTAAATCCTGCCGCTGTTTGTA
CAGAAGCCAAATGACACGTGTGTTTTGAAACACTGCTGCGAATAGTTCGAGCCCCGAACCCGGATTCTCGCTAAGAAGA
GACCGTCGGTCTCCGAACGGCCCCGATTTTACTGTTTGGTGAACACTATCTCCGGAGAAGTTGCTATAGATTGCTTTAT
AACGGTTCCGCAAGAAGGGGGGGATTTTCCGGCTTGCAGGACTCAAGAAACTGGATGCTAAAAGTCATTTAAATGTTCT
AACAGCATTGGAAAATGGGAGCTGCTACGAAGTTAGCGTTCGCTGTTTTTCTCATCTCGTGTTCTTCAGGTGCCATTCT
TGGCAGATCAGAAACACAAGAATGCATCTACTACAACGCTAATTGGGAGAAAGATAAAACAAATCGCAGTGGCATTGAA
CCCTGTTATGGAGATAAAGATAAAAGACGACACTGTTTTGCTACATGGAAGAATATTTCTGGATCAATTGAAATCGTGA
AACAAGGTTGCTGGCTGGATGACATCAACTGTTACGACAGGAATGATTGCATTGAGAAAAAAGACAGCCCTGAAGTGTT
CTTCTGTTGTTGTGAAGGCAACATGTGTAATGAACGCTTCTTCTATTTTCCAGAAATGGAGGTCACACAGCCAACTTCC
AATCCAGTCACACCGAAGCCACCTCTATTCAATACCTTGCTTTATTCATTGGTGCCTATAATGGGAATTGCAGTGATTG
TGCTCTTTTCATTTTGGATGTACAGACATCACAAGCTAGCATATCCTCCAGTACTTGTTCCAACCCAAGATCCTGGACC
ACCACCGCCTTCACCATTGATGGGTTTGAAGCCACTGCAGTTGCTAGAGATCAAAGCCAGGGGACGATTTGGGTGTGTG
TGGAAAGCTCAGCTGCTGAATGAGTATGTTGCAGTCAAAATATTCCCTATCCAGGACAAACAGTCGTGGCAGAATGAAT
ATGAAATTTACAGCCTACCTGGAATGAAGCATGACAATATTTTACAGTTCATCGGTGCAGAGAAGCGAGGCACCAGCAT
TGATGTGGACCTCTGGTTAATTACAGCTTTTCACGAAAAGGGTTCATTAACTGACTTCCTCAAGGCTAACGTGGTTTCC
TGGAATGAGCTGTGTCACATTGCTCAGACTATGGCTCGAGGCTTGGCTTATCTCCATGAGGATATACCAGGGCTAAAAG
ACGGACATAAACCCGCCATCTCACACAGGGACATCAAAAGCAAGAATGTGCTGCTGAAAAACAACCTTACAGCTTGCAT
TGCTGATTTTGGTCTAGCTTTAAAGTTTGAGGCTGGAAAATCTGCAGGAGATACACATGGACAGGTTGGCACACGAAGG
TACATGGCTCCTGAGGTACTAGAAGGTGCTATAAACTTCCAAAGGGATGCGTTTTTGAGAATAGACATGTATGCCATGG
GCTTGGTCCTCTGGGAGCTGGCATCGCGCTGCACTGCCTCAGATGGCCCAGTAGATGAGTACATGTTGCCATTTGAAGA
AGAAATTGGCCAGCATCCTTCCCTTGAAGACATGCAGGAAGTTGTGGTTCATAAAAAGAAGAGACCTGTTTTAAGAGAG
TGTTGGCAAAAGCATTCTGGAATGGCGATGCTCTGTGAAACCATCGAGGAGTGCTGGGATCACGACGCAGAAGCCAGGC
TGTCGGCGGGGTGCGTAGAAGAACGCATTATTCAGATGCAAAAATTAACTAACATTATAACAACAGAGGACATTGTGAC
TGTGGTCACGATGGTGACAAACGTTGACTTTCCTCCCAAAGAATCCAGTCTATGATAGTTGCACTGGTCACGTAACTGA
CCAACGGGACTCTTCACTGGAGCTGCTAAAGCTAACGGGACTGCTGTCGTCATTGTGTTCTGTGTGAAGCGACCGCGGG
GTCTCTGGGAGCATCGTCAGGAGGTGTTTCCCTTTCTGCTCCCCCTCCTCCTCCCACACACGAATCCATGAGACTTTCT
GCATTCCCTGCTTACGCCGGAAGCGCGCGTGCTGAGAGGTGGCAGTGGGCCGTTCAGGGCCTGAAGCAAAGAGCGGACC
TGGACGGGCTAACTGAGCGTTTTAAAAACTGACATCAGATTTCTTAATAGCCGTCAGAAGAGACTAATTCCTTAAATGA
ACTACTGTTATTTTTTTTAAATCAAACATTT
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3

Lateral Plate Mesoderm

Primitive Streak

Stage 3+

4-6
stage 5

Hensen's Node

 
7-12
stage 11
stage 11

Lateral Plate Mesoderm

Notochord

Somites

 
13-18
stage 15

Somites

Stage 15-16

25-30
stage 22
stage 22
stage 22

Gut

Myotome

 
31-44
stage 44
  
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