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A chicken embryo gene expression database 		 
GEISHA - A Chicken Embryo Gene Expression Database
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Gene Expression Report

Probe 1

GEISHA IdActR-IIB.Stern.1995
 NCBIEnsembl
Gene NameACVR2B 
AliasesACVR2B, activin A receptor, type IIB, Official 
Gene Descriptionactivin A receptor, type IIB 
Gene Ontologyshow
GO:0000166 nucleotide binding IEA
GO:0000287 magnesium ion binding IEA
GO:0004872 receptor activity IEA
GO:0005524 ATP binding IEA
GO:0006468 protein amino acid phosphorylation IEA
GO:0016020 membrane IEA
GO:0016021 integral to membrane IEA
GO:0016740 transferase activity IEA
GO:0017002 activin receptor activity IEA
GO:0030145 manganese ion binding IEA
GO:0032924 activin receptor signaling pathway IEA
Ensembl Genome Map
contig view
CitationLevin M, Johnson RL, Stern CD, Kuehn M, Tabin C (1995). A molecular pathway determining left-right asymmetry in chick embryogenesis. Cell. 1995 Sep 8;82(5):803-14.
Complete Sequenceshow
CCGATTTTTCAGGATTTTTTTTTTTTCTCCCTCCTCATTTATTTTTCTTTTTTTTTCTTTTTTTTTTCTTCTTTTTTTT
TTTCTCGCGAAGGAGCAGCGTCGCTTCCTTCCTCCTTTCCCCTCTGCTTCCAGCTCTTTATTTTGAATACGCTTTATAT
TTCCCCTTGGGAAAGAGGGGCACGCGAGGAGAGAGAGAGAGAGAGAGAGAAACAAACAAACAAACAAACAAAAACCAAA
ACGCAAAACCACACCGAGTGAAGGAATATGAGCGCTTCGTGGCTGACTTTGGCCGTGCTCTGTGCAACTTTGGGCGCAG
GACCAGGTCACGGGGAGGCAGAGACGAGGGAATGCATTTACTACAACGCCAACTGGGAGCTGGAGAAGACCAACCAGAG
TGGCGTGGAGCGCTGCGAGGGGGAGAAGGACAAGCGGCTCCACTGCTACGCCTCCTGGAGAAACAACTCGGGATCCATT
GAGCTGGTGAAGAAAGGCTGCTGGTTAGATGACTTCAACTGTTATGACAGGCAGGAGTGCGTAGCCACAGAAGAAAACC
CTCAAGTGTTTTTCTGCTGCTGCGAGGGCAACTACTGCAATGAGAAATTCACCCACTTGCCTGAAGTAACTGGCCCAGA
AGTCATATATGAGCCGCCACCACCAACGCCCTCCCTGCTTAACATCCTGGTGTACTCTCTGCTGCCCATCGCTGTCCTG
TCAGTGGCCATCCTCTTGGCCTTCTGGATGTATCGGCACCGCAAGCCTCCCTACGGGCACGTTGACATCAATGAGGACC
CCGGCCCACCACCTCCTTCTCCCCTGGTTGGCCTAAAACCTCTACAGCTCCTGGAGATCAAAGCCAGGGGACGCTTTGG
CTGCGTGTGGAAGGCTCAGCTGATGAATGACTACGTAGCAGTGAAAATCTTCCCAATTCAGGATAAGCAATCTTGGCAG
AGTGAGAGGGAGATTTTCAATACTCCTGGCATGAAGCATGAAAACCTTTTGCAATTTATCGCAGCAGAAAAGAGAGGGA
CAAACCTAGAGACAGAGCTCTGGCTGATCACAGCGTTCCACGACAAGGGCTCTCTCACGGATTACCTGAAGGGCAATAT
CATCAGCTGGAATGAGCTCTGCCATGTTGCAGAAACCATGGCCCGTGGCTTGTCTTACCTCCATGAGGACGTCCCGTGG
TGCAAGGGTGAAGGACACAAACCTGCTATAGCACACAGGGACTTCAAGAGTAAAAACGTCTTGCTGAAGAACGACTTAA
CGGCGGTGCTAGCCGATTTTGGTCTTGCTGTACGGTTTGAACCTGGAAAACCTCCAGGGGACACCCATGGACAGGTGGG
AACAAGGAGGTATATGGCTCCTGAAGTGTTAGAGGGAGCAATCAACTTCCAACGAGACGCCTTCCTGAGAATAGACATG
TACGCAATGGGACTGGTATTGTGGGAGTTAGTCTCCAGATGTAGAGCAGTTGATGGTCCAGTGGATGAATACATGCTGC
CTTTTGAAGAAGAAATAGGTCAGCACCCATCCCTTGAGGACCTGCAAGAAGTGGTGGTTCACAAGAAGATGCGCCCCGT
CTTCAAGGATCATTGGCTGAAACACCCTGGCTTGGCGCAGCTCTGCGTGACCATCGAAGAGTGCTGGGACCACGACGCA
GAGGCTCGGCTCTCGGCAGGCTGTGTCGAGGAGCGCATTGCTCAGATCCGCAAATCCGTAAACGGCACTACCTCGGACT
GCCTTGTCTCCATCGTGACGTCCGTCACCAACGTGGACTTGCCGCCCAAAGAGTCCAGTATCTAAGTCCTGGTTTGCTT
TTGTCTTTCCAGACTCAGTGGATTTGAAAAAAGAAAAAGAAGAAGCTTAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAC
ACACGAG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3

Primitive Streak

 
4-6
stage 4

Primitive Streak

 
7-12
stage 11
stage 11

Dermomyotome

Neural Plate/Tube

Peripheral Nervous System

Stage 11-12

13-18
stage 17

Neural Plate/Tube

Somites

 
25-30
stage 22
stage 22
stage 22

Limb Buds

Neural Plate/Tube

Somites

 
31-44
stage 44

Dermomyotome

Neural Plate/Tube

Somites

 

Probe 2

GEISHA IdAct-RIIb.Levin.1995
 NCBIEnsembl
Gene NameACVR2B 
AliasesACVR2B, activin A receptor, type IIB, Official 
Gene Descriptionactivin A receptor, type IIB 
Gene Ontologyshow
GO:0000166 nucleotide binding IEA
GO:0000287 magnesium ion binding IEA
GO:0004872 receptor activity IEA
GO:0005524 ATP binding IEA
GO:0006468 protein amino acid phosphorylation IEA
GO:0016020 membrane IEA
GO:0016021 integral to membrane IEA
GO:0016740 transferase activity IEA
GO:0017002 activin receptor activity IEA
GO:0030145 manganese ion binding IEA
GO:0032924 activin receptor signaling pathway IEA
Ensembl Genome Map
contig view
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc #NM_204317).
Complete Sequenceshow
CCGATTTTTCAGGATTTTTTTTTTTTCTCCCTCCTCATTTATTTTTCTTTTTTTTTCTTTTTTTTTTCTTCTTTTTTTT
TTTCTCGCGAAGGAGCAGCGTCGCTTCCTTCCTCCTTTCCCCTCTGCTTCCAGCTCTTTATTTTGAATACGCTTTATAT
TTCCCCTTGGGAAAGAGGGGCACGCGAGGAGAGAGAGAGAGAGAGAGAGAAACAAACAAACAAACAAACAAAAACCAAA
ACGCAAAACCACACCGAGTGAAGGAATATGAGCGCTTCGTGGCTGACTTTGGCCGTGCTCTGTGCAACTTTGGGCGCAG
GACCAGGTCACGGGGAGGCAGAGACGAGGGAATGCATTTACTACAACGCCAACTGGGAGCTGGAGAAGACCAACCAGAG
TGGCGTGGAGCGCTGCGAGGGGGAGAAGGACAAGCGGCTCCACTGCTACGCCTCCTGGAGAAACAACTCGGGATCCATT
GAGCTGGTGAAGAAAGGCTGCTGGTTAGATGACTTCAACTGTTATGACAGGCAGGAGTGCGTAGCCACAGAAGAAAACC
CTCAAGTGTTTTTCTGCTGCTGCGAGGGCAACTACTGCAATGAGAAATTCACCCACTTGCCTGAAGTAACTGGCCCAGA
AGTCATATATGAGCCGCCACCACCAACGCCCTCCCTGCTTAACATCCTGGTGTACTCTCTGCTGCCCATCGCTGTCCTG
TCAGTGGCCATCCTCTTGGCCTTCTGGATGTATCGGCACCGCAAGCCTCCCTACGGGCACGTTGACATCAATGAGGACC
CCGGCCCACCACCTCCTTCTCCCCTGGTTGGCCTAAAACCTCTACAGCTCCTGGAGATCAAAGCCAGGGGACGCTTTGG
CTGCGTGTGGAAGGCTCAGCTGATGAATGACTACGTAGCAGTGAAAATCTTCCCAATTCAGGATAAGCAATCTTGGCAG
AGTGAGAGGGAGATTTTCAATACTCCTGGCATGAAGCATGAAAACCTTTTGCAATTTATCGCAGCAGAAAAGAGAGGGA
CAAACCTAGAGACAGAGCTCTGGCTGATCACAGCGTTCCACGACAAGGGCTCTCTCACGGATTACCTGAAGGGCAATAT
CATCAGCTGGAATGAGCTCTGCCATGTTGCAGAAACCATGGCCCGTGGCTTGTCTTACCTCCATGAGGACGTCCCGTGG
TGCAAGGGTGAAGGACACAAACCTGCTATAGCACACAGGGACTTCAAGAGTAAAAACGTCTTGCTGAAGAACGACTTAA
CGGCGGTGCTAGCCGATTTTGGTCTTGCTGTACGGTTTGAACCTGGAAAACCTCCAGGGGACACCCATGGACAGGTGGG
AACAAGGAGGTATATGGCTCCTGAAGTGTTAGAGGGAGCAATCAACTTCCAACGAGACGCCTTCCTGAGAATAGACATG
TACGCAATGGGACTGGTATTGTGGGAGTTAGTCTCCAGATGTAGAGCAGTTGATGGTCCAGTGGATGAATACATGCTGC
CTTTTGAAGAAGAAATAGGTCAGCACCCATCCCTTGAGGACCTGCAAGAAGTGGTGGTTCACAAGAAGATGCGCCCCGT
CTTCAAGGATCATTGGCTGAAACACCCTGGCTTGGCGCAGCTCTGCGTGACCATCGAAGAGTGCTGGGACCACGACGCA
GAGGCTCGGCTCTCGGCAGGCTGTGTCGAGGAGCGCATTGCTCAGATCCGCAAATCCGTAAACGGCACTACCTCGGACT
GCCTTGTCTCCATCGTGACGTCCGTCACCAACGTGGACTTGCCGCCCAAAGAGTCCAGTATCTAAGTCCTGGTTTGCTT
TTGTCTTTCCAGACTCAGTGGATTTGAAAAAAGAAAAAGAAGAAGCTTAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAC
ACACGAG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-30
stage 4
stage 4
stage 4

Hensen's Node

Primitive Streak

 
31-44
stage 44
stage 44

Hensen's Node

Primitive Streak

 

Probe 3

GEISHA IdACTRIIB.McCabe.2007
 NCBIEnsembl
Gene NameACVR2BAVR2B_CHICK
AliasesACVR2B, activin A receptor, type IIB, Official 
Gene Descriptionactivin A receptor, type IIBActivin receptor type-2B precursor (EC 2.7.11.30) (Activin receptor type IIB) (ACTR-IIB). [Source:Uniprot/SWISSPROT;Acc:Q90670]
Gene Ontologyshow
GO:0000166 nucleotide binding IEA
GO:0000287 magnesium ion binding IEA
GO:0004872 receptor activity IEA
GO:0005524 ATP binding IEA
GO:0006468 protein amino acid phosphorylation IEA
GO:0016020 membrane IEA
GO:0016021 integral to membrane IEA
GO:0016740 transferase activity IEA
GO:0017002 activin receptor activity IEA
GO:0030145 manganese ion binding IEA
GO:0032924 activin receptor signaling pathway IEA
show
GO:0000166 nucleotide binding IEA
GO:0000287 magnesium ion binding IEA
GO:0004672 protein kinase activity IEA
GO:0004674 protein serine/threonine kinase activity IEA
GO:0004675 transmembrane receptor protein serine/threonine kinase activity IEA
GO:0004702 receptor signaling protein serine/threonine kinase activity IEA
GO:0004872 receptor activity IEA
GO:0005024 transforming growth factor beta receptor activity IEA
GO:0005524 ATP binding IEA
GO:0005737 cytoplasm IEA
GO:0006468 protein amino acid phosphorylation IEA
GO:0007165 signal transduction IEA
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway IEA
GO:0009952 anterior/posterior pattern formation IEA
GO:0009986 cell surface IEA
GO:0016020 membrane IEA
GO:0016021 integral to membrane IEA
GO:0016301 kinase activity IEA
GO:0016740 transferase activity IEA
GO:0019838 growth factor binding IEA
GO:0030145 manganese ion binding IEA
GO:0032927 positive regulation of activin receptor signaling pathway IEA
GO:0045449 regulation of transcription IEA
GO:0046872 metal ion binding IEA
NCBI Nucleotide HitNM_204317 show details
scoreevaluealignment lengthdescription
4450.0445Gallus gallus activin A receptor, type IIB (ACVR2B), mRNA
Ensembl Genome Map
contig view
CitationMcCabe KL, Shiau CE, Bronner-Fraser M. Identification of candidate secreted factors involved in trigeminal placode induction. Dev Dyn. 2007 Oct;236(10):2925-35.
CopyrightCopyright © 2007 Wiley-Liss, Inc.
CommentsSequence below was obtained from NCBI (NM_204317) using the primers provided in the publication: ACTRIIB forward primer, 5'-TTTGCAATTTATCGCAGCAG-3'; and ACTRIIB reverse primer, 5'-TACCAGTCCCATTGCGTACA-3'.
Complete Sequenceshow
TTTGCAATTTATCGCAGCAGAAAAGAGAGGGACAAACCTAGAGACAGAGCTCTGGCTGATCACAGCGTTCCACGACAAG
GGCTCTCTCACGGATTACCTGAAGGGCAATATCATCAGCTGGAATGAGCTCTGCCATGTTGCAGAAACCATGGCCCGTG
GCTTGTCTTACCTCCATGAGGACGTCCCGTGGTGCAAGGGTGAAGGACACAAACCTGCTATAGCACACAGGGACTTCAA
GAGTAAAAACGTCTTGCTGAAGAACGACTTAACGGCGGTGCTAGCCGATTTTGGTCTTGCTGTACGGTTTGAACCTGGA
AAACCTCCAGGGGACACCCATGGACAGGTGGGAACAAGGAGGTATATGGCTCCTGAAGTGTTAGAGGGAGCAATCAACT
TCCAACGAGACGCCTTCCTGAGAATAGACATGTACGCAATGGGACTGGTA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-10
stage 8
stage 10

Neural Crest

Neural Plate/Tube

Neural Folds

Presumptive Trigeminal Placode

Trigeminal Placode
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