GEISHA - A Chicken Embryo Gene Expression Database
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ACVR2A
activin A receptor type 2A

Gene
Official SymbolACVR2A
Official Full Nameactivin A receptor type 2A
CGNC ID9451
also known asactivin receptor type-2A|ACTR-IIA|ACTRIIA|activin A receptor, type IIA|activin receptor IIA|activin receptor type 2A|activin receptor type IIA, AVR2A, Activin receptor type-2A precursor , ACTR-IIA, ACTRIIA
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Sequence Information
Genomic
RNANM_205367
PolypeptideNP_990698
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly41772FBgn0003169
Human92ENSG00000121989MIM:102581
Mouse11480ENSMUSG00000052155All phenotypic alleles (4):Targeted, knock-out(4) MGI:102806
Xenopus100216172, 399283484011
Zebrafish553359, 100331014ENSDARG00000011188ZDB-GENE-980526-227, ZDB-GENE-120215-23ZFIN:ZDB-GENE-980526-227, ZFIN:ZDB-GENE-120215-23
Gene Ontology
Molecular FunctionATP binding, PDZ domain binding, activin binding, coreceptor activity, growth factor binding, inhibin binding, more...metal ion binding, protein self-association, receptor signaling protein serine/threonine kinase activity, transforming growth factor beta-activated receptor activity
Biological ProcessBMP signaling pathway, Sertoli cell proliferation, anterior/posterior pattern specification, more...determination of left/right symmetry, embryonic skeletal system development, gastrulation with mouth forming second, mesoderm development, penile erection, positive regulation of activin receptor signaling pathway, positive regulation of bone mineralization, positive regulation of erythrocyte differentiation, positive regulation of osteoblast differentiation, positive regulation of pathway-restricted SMAD protein phosphorylation, regulation of BMP signaling pathway, regulation of nitric-oxide synthase activity, sperm ejaculation, spermatogenesis
Cellular Componentcell surface, cytoplasm, inhibin-betaglycan-ActRII complex, integral component of membrane
Links to other databases
Entrez Gene396324
Ensembl Gene
KEGGgga:396324

Entry 1

GEISHA IdACVR2A.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerTCACACAGCCAACTTCCAATCC
Reverse cDNA Template PrimerATTAACCCTCACTAAAGGCAGAATGCTTTTGCCAACACTCTCcDNA Template Length984
Forward cDNA Template Probeshow
CACCCCTTAAGAGGTCTCTTCTTTTATGAACACGAATTCCGGAGGCCTCCAGGGGAAGGAGGCTGGCCAATTTCTCCCT
CCAAGGACAAGGTGTACTCTTCTACTGGGCCTTCTGAGGCAGTGCAGCGCGTAGGCCACCCCCCCAGAGGACCAAGCCC
AGGGCATACATGCCTATTCTCAAAAACGCATCCCTTTGGAAGTTAATAGCACCTTCTAGTACCTCAGGAGCCATGTACC
TTCGGGTGCCAACCTGTCCATGTGTATCTCCCGCAGATTTTCCCGCCTCGAACTTTAAAGCTAAACCAAAATCCCCAAT
GGAAGCTGGAAGGGTGGTTTTCCACAGCCCCTTCCTGCTTTTGAAGGCCCCGCGCGAAAAGGGGGGTTTATGTCCGTCT
TTTAACCCTGGTACATCCCCAGGGGAAAAAACCAAACCCCCAGCCCTAAACTGGGCCATGGGAAACAGCTCCTTCCAGG
AAACCACGTTAGCCCTGGGGAAGTTCGTTTATCAACCCTTTTCCTGAAAAGGCGTAATTAACCCGAAGTCCCCCTCCAT
GCGGGGGGCGCCCTTCTCTGCCCCGATGGAACGGGAAAAAATGGCCTGCTTCCTTCCCGGAGAGCTGGTAATTTCACAA
TTCATCTGGCACGACTGGTTGTCCCGGGAAAGGAAAATTTTGACTGGGGAACAATCATTCAGCAGGCGAACTTTTCCCC
CAAAAGCGCGATCAGTCCCCGGGAGTGTGATCTCCTTTTAACAGAAATTGGCTTTCTAACCCCTCCATTGGTGACGGGG
GGGGTGGGTCCCGGAACTTGGGTTGGGAAAAAATAACCGAAAGAAAAAACTACCTTGGGGTGGTTTGGAAAAACAAAAG
GGAAAAAAACCCCCCCCCCTGGAAATTCCCAATAAAGGGGGCCCATGAAAAAAAAAAAGAACTGATTAAAAAAGGTTTC
CGGGGAACCGCATTGCAAATTGGCGGGGGAAAAAAAAATAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 5
stage 6
stage 6
Endoderm
Headfold
Lateral Plate Mesoderm
Neural Plate/Tube
Notochord
Unlabeled
pre-cardiac mesoderm
7-12
stage 7
stage 8
stage 10
stage 11
stage 11
stage 11
Ectoderm
Endoderm
Forebrain
Head Mesenchyme
Headfold
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Mesencephalon
Midbrain
Neural Plate/Tube
Notochord
Paraxial Mesoderm
Sinus Venosus
Somatic Mesoderm
Somites
Splanchnic Mesoderm
extraembryonic endoderm
extraembryonic mesoderm
 
13-18
stage 16
Eye
Midgut
Notochord
Pharyngeal Arches and Clefts
Somites
 
19-24
stage 21
stage 22
stage 23
stage 24
Eye
Leg Mesenchyme
Midgut
Pharyngeal Arches and Clefts
Somites
Wing Mesenchyme
 

Entry 2

GEISHA IdACTR2A.McCabe.2007Data SourcePublication
Complete cDNA Template Probeshow
ACACGAAGGTACATGGCTCCTGAGGTACTAGAAGGTGCTATAAACTTCCAAAGGGATGCGTTTTTGAGAATAGACATGT
ATGCCATGGGCTTGGTCCTCTGGGAGCTGGCATCGCGCTGCACTGCCTCAGATGGCCCAGTAGATGAGTACATGTTGCC
ATTTGAAGAAGAAATTGGCCAGCATCCTTCCCTTGAAGACATGCAGGAAGTTGTGGTTCATAAAAAGAAGAGACCTGTT
TTAAGAGAGTGTTGGCAAAAGCATTCTGGAATGGCGATGCTCTGTGAAACCATCGAGGAGTGCTGGGATCACGACGCAG
AAGCCAGGCTGTCGGCGGGGTGCGTAGAAGAACGCATTATTCAGATGCAAAAATTAACTAACATTATAACAACAGAGGA
CATTGTGACTGTGGTCACGATGGTGACAAACGTTGACTTTCCTCCCAAAGAATCCAGTCTATGATAGTTGCACTGGTCA
CGTAACTGACCAACGGGACTCTTCACTGGAGCTG
CitationMcCabe KL, Shiau CE, Bronner-Fraser M. Identification of candidate secreted factors involved in trigeminal placode induction. Dev Dyn. 2007 Oct;236(10):2925-35.
CopyrightCopyright © 2007 Wiley-Liss, Inc.
CommentsSequence below was obtained from NCBI (NM_205367) using the primers given in the publication: ACTRIIA forward primer, 5'-ACACGAAGGTACATGGCTCC-3'; and reverse primer, 5'-CAGCTCCAGTGAAGAGTCCC-3'.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-10
stage 8
stage 10
Neural Plate/Tube
Placcode
Neural Folds
Trigeminal Placode

Entry 3

GEISHA IdAct-RIIa.Levin.1995Data SourcePublication
Complete cDNA Template Probeshow
CCGAGCTGCCGGTTGGACTCGGGAGACTCTAGAGACGGCTCCAGCCACCACCGCCCAGAGACAAAAACCGGGCTCGGCC
TTTTCTCCTCGCCAACCCCCAAACTGCACTCCTGGAGGGACAAAGTTGGTGTCCGCCGCTCTGCCTCGCCGCGCGGGAG
ACGGGAGAGCCGCGCCGCGCTCCGTGCGGGCCGGGCGTGAGGCGGGCTGAGAGCTAAGGGCGGCCGGGCTGCGTGCCCC
GGGCCGGGCAGACGCGAGGGCGGCACGAGGGGAGCGGCGGCGGAGGGCTTCTCCTTCTCGCCCCTGCTGCTCGGCGTTC
GCGTTCTTCTGCCTTTTCTTTTTTGTTGTTTGTTTGTTTGTTTGTTTTCCCCTCAGAGAATCAGAAGCGGGCGGGGCGA
TGTGCCCGGGGGCTGCCGGGGGAAGGGGCCTGCGGGCGGCCGGGCAGCCGTGAGCGGCCCCGTGGAGCGCAGCCACCCA
GCGCCGGGAGCCTGCCTGGCCTCGCGGTTGTTTTTCTCTCTTGCTCTTGTTTTTGTTTTTTTTTTTTTCTTTCCTTCAG
TCTGCGTTTAAATACCAAATTGAGTCTCGAGGGAGCGGGGTGGGGGGCATGGAAGCGTCGTAGAGGGGAATCGTAAAGC
GCGGTTCCCGGAGCGGAGCCTCAGCCCGCGGCCCCTCCGCGTTGCTGCACGGACTGACGGAGCGCTGCCCGCCGCTCTC
CCCGGAGCTGCCATGGAGCCGCCGCGCTGCCCGCGCCCCGCGCTGCCTAACGGGAGCCGGGAGCCGATCCGCCGTGTGC
TGATCTACCGCGGGGAAACGCCGTGCACGTTCATGTGGGAGAGCCGGAGTGCGCGCACACACTGCCTCGTGCCCGGCGG
CTCCGCTTGACTTCATCTTCCTTCGTTTCCCGTGGATCCGTAGCGTACTTTTCTGAATTAAATCCTGCCGCTGTTTGTA
CAGAAGCCAAATGACACGTGTGTTTTGAAACACTGCTGCGAATAGTTCGAGCCCCGAACCCGGATTCTCGCTAAGAAGA
GACCGTCGGTCTCCGAACGGCCCCGATTTTACTGTTTGGTGAACACTATCTCCGGAGAAGTTGCTATAGATTGCTTTAT
AACGGTTCCGCAAGAAGGGGGGGATTTTCCGGCTTGCAGGACTCAAGAAACTGGATGCTAAAAGTCATTTAAATGTTCT
AACAGCATTGGAAAATGGGAGCTGCTACGAAGTTAGCGTTCGCTGTTTTTCTCATCTCGTGTTCTTCAGGTGCCATTCT
TGGCAGATCAGAAACACAAGAATGCATCTACTACAACGCTAATTGGGAGAAAGATAAAACAAATCGCAGTGGCATTGAA
CCCTGTTATGGAGATAAAGATAAAAGACGACACTGTTTTGCTACATGGAAGAATATTTCTGGATCAATTGAAATCGTGA
AACAAGGTTGCTGGCTGGATGACATCAACTGTTACGACAGGAATGATTGCATTGAGAAAAAAGACAGCCCTGAAGTGTT
CTTCTGTTGTTGTGAAGGCAACATGTGTAATGAACGCTTCTTCTATTTTCCAGAAATGGAGGTCACACAGCCAACTTCC
AATCCAGTCACACCGAAGCCACCTCTATTCAATACCTTGCTTTATTCATTGGTGCCTATAATGGGAATTGCAGTGATTG
TGCTCTTTTCATTTTGGATGTACAGACATCACAAGCTAGCATATCCTCCAGTACTTGTTCCAACCCAAGATCCTGGACC
ACCACCGCCTTCACCATTGATGGGTTTGAAGCCACTGCAGTTGCTAGAGATCAAAGCCAGGGGACGATTTGGGTGTGTG
TGGAAAGCTCAGCTGCTGAATGAGTATGTTGCAGTCAAAATATTCCCTATCCAGGACAAACAGTCGTGGCAGAATGAAT
ATGAAATTTACAGCCTACCTGGAATGAAGCATGACAATATTTTACAGTTCATCGGTGCAGAGAAGCGAGGCACCAGCAT
TGATGTGGACCTCTGGTTAATTACAGCTTTTCACGAAAAGGGTTCATTAACTGACTTCCTCAAGGCTAACGTGGTTTCC
TGGAATGAGCTGTGTCACATTGCTCAGACTATGGCTCGAGGCTTGGCTTATCTCCATGAGGATATACCAGGGCTAAAAG
ACGGACATAAACCCGCCATCTCACACAGGGACATCAAAAGCAAGAATGTGCTGCTGAAAAACAACCTTACAGCTTGCAT
TGCTGATTTTGGTCTAGCTTTAAAGTTTGAGGCTGGAAAATCTGCAGGAGATACACATGGACAGGTTGGCACACGAAGG
TACATGGCTCCTGAGGTACTAGAAGGTGCTATAAACTTCCAAAGGGATGCGTTTTTGAGAATAGACATGTATGCCATGG
GCTTGGTCCTCTGGGAGCTGGCATCGCGCTGCACTGCCTCAGATGGCCCAGTAGATGAGTACATGTTGCCATTTGAAGA
AGAAATTGGCCAGCATCCTTCCCTTGAAGACATGCAGGAAGTTGTGGTTCATAAAAAGAAGAGACCTGTTTTAAGAGAG
TGTTGGCAAAAGCATTCTGGAATGGCGATGCTCTGTGAAACCATCGAGGAGTGCTGGGATCACGACGCAGAAGCCAGGC
TGTCGGCGGGGTGCGTAGAAGAACGCATTATTCAGATGCAAAAATTAACTAACATTATAACAACAGAGGACATTGTGAC
TGTGGTCACGATGGTGACAAACGTTGACTTTCCTCCCAAAGAATCCAGTCTATGATAGTTGCACTGGTCACGTAACTGA
CCAACGGGACTCTTCACTGGAGCTGCTAAAGCTAACGGGACTGCTGTCGTCATTGTGTTCTGTGTGAAGCGACCGCGGG
GTCTCTGGGAGCATCGTCAGGAGGTGTTTCCCTTTCTGCTCCCCCTCCTCCTCCCACACACGAATCCATGAGACTTTCT
GCATTCCCTGCTTACGCCGGAAGCGCGCGTGCTGAGAGGTGGCAGTGGGCCGTTCAGGGCCTGAAGCAAAGAGCGGACC
TGGACGGGCTAACTGAGCGTTTTAAAAACTGACATCAGATTTCTTAATAGCCGTCAGAAGAGACTAATTCCTTAAATGA
ACTACTGTTATTTTTTTTAAATCAAACATTT
CitationLevin M, Johnson RL, Stern CD, Kuehn M, Tabin C (1995). A molecular pathway determining left-right asymmetry in chick embryogenesis. Cell. 1995 Sep 8;82(5):803-14.
CopyrightCopyright © 1995 Elsevier Inc. All Rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_205367).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-5
stage 4
stage 5
stage 5
stage 5
Hensen's Node
Lateral Plate Mesoderm
Primitive Streak
Stage 3+
all
 
 
 
  

Entry 4

GEISHA IdActR-IIA.Stern.1995Data SourcePublication
Complete cDNA Template Probeshow
CCGAGCTGCCGGTTGGACTCGGGAGACTCTAGAGACGGCTCCAGCCACCACCGCCCAGAGACAAAAACCGGGCTCGGCC
TTTTCTCCTCGCCAACCCCCAAACTGCACTCCTGGAGGGACAAAGTTGGTGTCCGCCGCTCTGCCTCGCCGCGCGGGAG
ACGGGAGAGCCGCGCCGCGCTCCGTGCGGGCCGGGCGTGAGGCGGGCTGAGAGCTAAGGGCGGCCGGGCTGCGTGCCCC
GGGCCGGGCAGACGCGAGGGCGGCACGAGGGGAGCGGCGGCGGAGGGCTTCTCCTTCTCGCCCCTGCTGCTCGGCGTTC
GCGTTCTTCTGCCTTTTCTTTTTTGTTGTTTGTTTGTTTGTTTGTTTTCCCCTCAGAGAATCAGAAGCGGGCGGGGCGA
TGTGCCCGGGGGCTGCCGGGGGAAGGGGCCTGCGGGCGGCCGGGCAGCCGTGAGCGGCCCCGTGGAGCGCAGCCACCCA
GCGCCGGGAGCCTGCCTGGCCTCGCGGTTGTTTTTCTCTCTTGCTCTTGTTTTTGTTTTTTTTTTTTTCTTTCCTTCAG
TCTGCGTTTAAATACCAAATTGAGTCTCGAGGGAGCGGGGTGGGGGGCATGGAAGCGTCGTAGAGGGGAATCGTAAAGC
GCGGTTCCCGGAGCGGAGCCTCAGCCCGCGGCCCCTCCGCGTTGCTGCACGGACTGACGGAGCGCTGCCCGCCGCTCTC
CCCGGAGCTGCCATGGAGCCGCCGCGCTGCCCGCGCCCCGCGCTGCCTAACGGGAGCCGGGAGCCGATCCGCCGTGTGC
TGATCTACCGCGGGGAAACGCCGTGCACGTTCATGTGGGAGAGCCGGAGTGCGCGCACACACTGCCTCGTGCCCGGCGG
CTCCGCTTGACTTCATCTTCCTTCGTTTCCCGTGGATCCGTAGCGTACTTTTCTGAATTAAATCCTGCCGCTGTTTGTA
CAGAAGCCAAATGACACGTGTGTTTTGAAACACTGCTGCGAATAGTTCGAGCCCCGAACCCGGATTCTCGCTAAGAAGA
GACCGTCGGTCTCCGAACGGCCCCGATTTTACTGTTTGGTGAACACTATCTCCGGAGAAGTTGCTATAGATTGCTTTAT
AACGGTTCCGCAAGAAGGGGGGGATTTTCCGGCTTGCAGGACTCAAGAAACTGGATGCTAAAAGTCATTTAAATGTTCT
AACAGCATTGGAAAATGGGAGCTGCTACGAAGTTAGCGTTCGCTGTTTTTCTCATCTCGTGTTCTTCAGGTGCCATTCT
TGGCAGATCAGAAACACAAGAATGCATCTACTACAACGCTAATTGGGAGAAAGATAAAACAAATCGCAGTGGCATTGAA
CCCTGTTATGGAGATAAAGATAAAAGACGACACTGTTTTGCTACATGGAAGAATATTTCTGGATCAATTGAAATCGTGA
AACAAGGTTGCTGGCTGGATGACATCAACTGTTACGACAGGAATGATTGCATTGAGAAAAAAGACAGCCCTGAAGTGTT
CTTCTGTTGTTGTGAAGGCAACATGTGTAATGAACGCTTCTTCTATTTTCCAGAAATGGAGGTCACACAGCCAACTTCC
AATCCAGTCACACCGAAGCCACCTCTATTCAATACCTTGCTTTATTCATTGGTGCCTATAATGGGAATTGCAGTGATTG
TGCTCTTTTCATTTTGGATGTACAGACATCACAAGCTAGCATATCCTCCAGTACTTGTTCCAACCCAAGATCCTGGACC
ACCACCGCCTTCACCATTGATGGGTTTGAAGCCACTGCAGTTGCTAGAGATCAAAGCCAGGGGACGATTTGGGTGTGTG
TGGAAAGCTCAGCTGCTGAATGAGTATGTTGCAGTCAAAATATTCCCTATCCAGGACAAACAGTCGTGGCAGAATGAAT
ATGAAATTTACAGCCTACCTGGAATGAAGCATGACAATATTTTACAGTTCATCGGTGCAGAGAAGCGAGGCACCAGCAT
TGATGTGGACCTCTGGTTAATTACAGCTTTTCACGAAAAGGGTTCATTAACTGACTTCCTCAAGGCTAACGTGGTTTCC
TGGAATGAGCTGTGTCACATTGCTCAGACTATGGCTCGAGGCTTGGCTTATCTCCATGAGGATATACCAGGGCTAAAAG
ACGGACATAAACCCGCCATCTCACACAGGGACATCAAAAGCAAGAATGTGCTGCTGAAAAACAACCTTACAGCTTGCAT
TGCTGATTTTGGTCTAGCTTTAAAGTTTGAGGCTGGAAAATCTGCAGGAGATACACATGGACAGGTTGGCACACGAAGG
TACATGGCTCCTGAGGTACTAGAAGGTGCTATAAACTTCCAAAGGGATGCGTTTTTGAGAATAGACATGTATGCCATGG
GCTTGGTCCTCTGGGAGCTGGCATCGCGCTGCACTGCCTCAGATGGCCCAGTAGATGAGTACATGTTGCCATTTGAAGA
AGAAATTGGCCAGCATCCTTCCCTTGAAGACATGCAGGAAGTTGTGGTTCATAAAAAGAAGAGACCTGTTTTAAGAGAG
TGTTGGCAAAAGCATTCTGGAATGGCGATGCTCTGTGAAACCATCGAGGAGTGCTGGGATCACGACGCAGAAGCCAGGC
TGTCGGCGGGGTGCGTAGAAGAACGCATTATTCAGATGCAAAAATTAACTAACATTATAACAACAGAGGACATTGTGAC
TGTGGTCACGATGGTGACAAACGTTGACTTTCCTCCCAAAGAATCCAGTCTATGATAGTTGCACTGGTCACGTAACTGA
CCAACGGGACTCTTCACTGGAGCTGCTAAAGCTAACGGGACTGCTGTCGTCATTGTGTTCTGTGTGAAGCGACCGCGGG
GTCTCTGGGAGCATCGTCAGGAGGTGTTTCCCTTTCTGCTCCCCCTCCTCCTCCCACACACGAATCCATGAGACTTTCT
GCATTCCCTGCTTACGCCGGAAGCGCGCGTGCTGAGAGGTGGCAGTGGGCCGTTCAGGGCCTGAAGCAAAGAGCGGACC
TGGACGGGCTAACTGAGCGTTTTAAAAACTGACATCAGATTTCTTAATAGCCGTCAGAAGAGACTAATTCCTTAAATGA
ACTACTGTTATTTTTTTTAAATCAAACATTT
CitationStern CD, Yu RT, Kakizuka A, Kintner CR, Mathews LS, Vale WW, Evans RM, Umesono K (1995). Activin and its receptors during gastrulation and the later phases of mesoderm development in the chick embryo. Dev Biol. 1995 Nov;172(1):192-205.
Copyright"Reprinted from Dev Biol, 172(1), Stern CD, Yu RT, Kakizuka A, Kintner CR, Mathews LS, Vale WW, Evans RM, Umesono K, Activin and its receptors during gastrulation and the later phases of mesoderm development in the chick embryo, 192-205, Copyright (1995), with permission from Copyright © 1995 UBC Press". All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (acc #NM_205367.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
Early Mesoderm
Primitive Streak
Stage 3+
4-6
stage 5
Early Mesoderm
Hensen's Node
heart field
7-12
stage 11
stage 11
Lateral Plate Mesoderm
Notochord
Somites
 
13-18
stage 15
Somites
Stage 15-16
19-22
stage 22
stage 22
stage 22
Gut
Myotome
 
all
 
  

Entry 5

GEISHA IdACTR2A.Hyre.2003Data SourcePublication
Complete cDNA Template Probeshow
CCGAGCTGCCGGTTGGACTCGGGAGACTCTAGAGACGGCTCCAGCCACCACCGCCCAGAGACAAAAACCGGGCTCGGCC
TTTTCTCCTCGCCAACCCCCAAACTGCACTCCTGGAGGGACAAAGTTGGTGTCCGCCGCTCTGCCTCGCCGCGCGGGAG
ACGGGAGAGCCGCGCCGCGCTCCGTGCGGGCCGGGCGTGAGGCGGGCTGAGAGCTAAGGGCGGCCGGGCTGCGTGCCCC
GGGCCGGGCAGACGCGAGGGCGGCACGAGGGGAGCGGCGGCGGAGGGCTTCTCCTTCTCGCCCCTGCTGCTCGGCGTTC
GCGTTCTTCTGCCTTTTCTTTTTTGTTGTTTGTTTGTTTGTTTGTTTTCCCCTCAGAGAATCAGAAGCGGGCGGGGCGA
TGTGCCCGGGGGCTGCCGGGGGAAGGGGCCTGCGGGCGGCCGGGCAGCCGTGAGCGGCCCCGTGGAGCGCAGCCACCCA
GCGCCGGGAGCCTGCCTGGCCTCGCGGTTGTTTTTCTCTCTTGCTCTTGTTTTTGTTTTTTTTTTTTTCTTTCCTTCAG
TCTGCGTTTAAATACCAAATTGAGTCTCGAGGGAGCGGGGTGGGGGGCATGGAAGCGTCGTAGAGGGGAATCGTAAAGC
GCGGTTCCCGGAGCGGAGCCTCAGCCCGCGGCCCCTCCGCGTTGCTGCACGGACTGACGGAGCGCTGCCCGCCGCTCTC
CCCGGAGCTGCCATGGAGCCGCCGCGCTGCCCGCGCCCCGCGCTGCCTAACGGGAGCCGGGAGCCGATCCGCCGTGTGC
TGATCTACCGCGGGGAAACGCCGTGCACGTTCATGTGGGAGAGCCGGAGTGCGCGCACACACTGCCTCGTGCCCGGCGG
CTCCGCTTGACTTCATCTTCCTTCGTTTCCCGTGGATCCGTAGCGTACTTTTCTGAATTAAATCCTGCCGCTGTTTGTA
CAGAAGCCAAATGACACGTGTGTTTTGAAACACTGCTGCGAATAGTTCGAGCCCCGAACCCGGATTCTCGCTAAGAAGA
GACCGTCGGTCTCCGAACGGCCCCGATTTTACTGTTTGGTGAACACTATCTCCGGAGAAGTTGCTATAGATTGCTTTAT
AACGGTTCCGCAAGAAGGGGGGGATTTTCCGGCTTGCAGGACTCAAGAAACTGGATGCTAAAAGTCATTTAAATGTTCT
AACAGCATTGGAAAATGGGAGCTGCTACGAAGTTAGCGTTCGCTGTTTTTCTCATCTCGTGTTCTTCAGGTGCCATTCT
TGGCAGATCAGAAACACAAGAATGCATCTACTACAACGCTAATTGGGAGAAAGATAAAACAAATCGCAGTGGCATTGAA
CCCTGTTATGGAGATAAAGATAAAAGACGACACTGTTTTGCTACATGGAAGAATATTTCTGGATCAATTGAAATCGTGA
AACAAGGTTGCTGGCTGGATGACATCAACTGTTACGACAGGAATGATTGCATTGAGAAAAAAGACAGCCCTGAAGTGTT
CTTCTGTTGTTGTGAAGGCAACATGTGTAATGAACGCTTCTTCTATTTTCCAGAAATGGAGGTCACACAGCCAACTTCC
AATCCAGTCACACCGAAGCCACCTCTATTCAATACCTTGCTTTATTCATTGGTGCCTATAATGGGAATTGCAGTGATTG
TGCTCTTTTCATTTTGGATGTACAGACATCACAAGCTAGCATATCCTCCAGTACTTGTTCCAACCCAAGATCCTGGACC
ACCACCGCCTTCACCATTGATGGGTTTGAAGCCACTGCAGTTGCTAGAGATCAAAGCCAGGGGACGATTTGGGTGTGTG
TGGAAAGCTCAGCTGCTGAATGAGTATGTTGCAGTCAAAATATTCCCTATCCAGGACAAACAGTCGTGGCAGAATGAAT
ATGAAATTTACAGCCTACCTGGAATGAAGCATGACAATATTTTACAGTTCATCGGTGCAGAGAAGCGAGGCACCAGCAT
TGATGTGGACCTCTGGTTAATTACAGCTTTTCACGAAAAGGGTTCATTAACTGACTTCCTCAAGGCTAACGTGGTTTCC
TGGAATGAGCTGTGTCACATTGCTCAGACTATGGCTCGAGGCTTGGCTTATCTCCATGAGGATATACCAGGGCTAAAAG
ACGGACATAAACCCGCCATCTCACACAGGGACATCAAAAGCAAGAATGTGCTGCTGAAAAACAACCTTACAGCTTGCAT
TGCTGATTTTGGTCTAGCTTTAAAGTTTGAGGCTGGAAAATCTGCAGGAGATACACATGGACAGGTTGGCACACGAAGG
TACATGGCTCCTGAGGTACTAGAAGGTGCTATAAACTTCCAAAGGGATGCGTTTTTGAGAATAGACATGTATGCCATGG
GCTTGGTCCTCTGGGAGCTGGCATCGCGCTGCACTGCCTCAGATGGCCCAGTAGATGAGTACATGTTGCCATTTGAAGA
AGAAATTGGCCAGCATCCTTCCCTTGAAGACATGCAGGAAGTTGTGGTTCATAAAAAGAAGAGACCTGTTTTAAGAGAG
TGTTGGCAAAAGCATTCTGGAATGGCGATGCTCTGTGAAACCATCGAGGAGTGCTGGGATCACGACGCAGAAGCCAGGC
TGTCGGCGGGGTGCGTAGAAGAACGCATTATTCAGATGCAAAAATTAACTAACATTATAACAACAGAGGACATTGTGAC
TGTGGTCACGATGGTGACAAACGTTGACTTTCCTCCCAAAGAATCCAGTCTATGATAGTTGCACTGGTCACGTAACTGA
CCAACGGGACTCTTCACTGGAGCTGCTAAAGCTAACGGGACTGCTGTCGTCATTGTGTTCTGTGTGAAGCGACCGCGGG
GTCTCTGGGAGCATCGTCAGGAGGTGTTTCCCTTTCTGCTCCCCCTCCTCCTCCCACACACGAATCCATGAGACTTTCT
GCATTCCCTGCTTACGCCGGAAGCGCGCGTGCTGAGAGGTGGCAGTGGGCCGTTCAGGGCCTGAAGCAAAGAGCGGACC
TGGACGGGCTAACTGAGCGTTTTAAAAACTGACATCAGATTTCTTAATAGCCGTCAGAAGAGACTAATTCCTTAAATGA
ACTACTGTTATTTTTTTTAAATCAAACATTT
CitationHyer J, Kuhlman J, Afif E, Mikawa T. Optic cup morphogenesis requires pre-lens ectoderm but not lens differentiation. Dev Biol. 2003 Jul 15;259(2):351-63.
CopyrightCopyright © 2003 Elsevier Science (USA) All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205367).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-11
stage 11
stage 11
Ectoderm
Eye
Optic Neuroectoderm

Entry 6

GEISHA IdActRIIa.Garcia-Castro.2000Data SourcePublication
Complete cDNA Template Probeshow
CCGAGCTGCCGGTTGGACTCGGGAGACTCTAGAGACGGCTCCAGCCACCACCGCCCAGAGACAAAAACCGGGCTCGGCC
TTTTCTCCTCGCCAACCCCCAAACTGCACTCCTGGAGGGACAAAGTTGGTGTCCGCCGCTCTGCCTCGCCGCGCGGGAG
ACGGGAGAGCCGCGCCGCGCTCCGTGCGGGCCGGGCGTGAGGCGGGCTGAGAGCTAAGGGCGGCCGGGCTGCGTGCCCC
GGGCCGGGCAGACGCGAGGGCGGCACGAGGGGAGCGGCGGCGGAGGGCTTCTCCTTCTCGCCCCTGCTGCTCGGCGTTC
GCGTTCTTCTGCCTTTTCTTTTTTGTTGTTTGTTTGTTTGTTTGTTTTCCCCTCAGAGAATCAGAAGCGGGCGGGGCGA
TGTGCCCGGGGGCTGCCGGGGGAAGGGGCCTGCGGGCGGCCGGGCAGCCGTGAGCGGCCCCGTGGAGCGCAGCCACCCA
GCGCCGGGAGCCTGCCTGGCCTCGCGGTTGTTTTTCTCTCTTGCTCTTGTTTTTGTTTTTTTTTTTTTCTTTCCTTCAG
TCTGCGTTTAAATACCAAATTGAGTCTCGAGGGAGCGGGGTGGGGGGCATGGAAGCGTCGTAGAGGGGAATCGTAAAGC
GCGGTTCCCGGAGCGGAGCCTCAGCCCGCGGCCCCTCCGCGTTGCTGCACGGACTGACGGAGCGCTGCCCGCCGCTCTC
CCCGGAGCTGCCATGGAGCCGCCGCGCTGCCCGCGCCCCGCGCTGCCTAACGGGAGCCGGGAGCCGATCCGCCGTGTGC
TGATCTACCGCGGGGAAACGCCGTGCACGTTCATGTGGGAGAGCCGGAGTGCGCGCACACACTGCCTCGTGCCCGGCGG
CTCCGCTTGACTTCATCTTCCTTCGTTTCCCGTGGATCCGTAGCGTACTTTTCTGAATTAAATCCTGCCGCTGTTTGTA
CAGAAGCCAAATGACACGTGTGTTTTGAAACACTGCTGCGAATAGTTCGAGCCCCGAACCCGGATTCTCGCTAAGAAGA
GACCGTCGGTCTCCGAACGGCCCCGATTTTACTGTTTGGTGAACACTATCTCCGGAGAAGTTGCTATAGATTGCTTTAT
AACGGTTCCGCAAGAAGGGGGGGATTTTCCGGCTTGCAGGACTCAAGAAACTGGATGCTAAAAGTCATTTAAATGTTCT
AACAGCATTGGAAAATGGGAGCTGCTACGAAGTTAGCGTTCGCTGTTTTTCTCATCTCGTGTTCTTCAGGTGCCATTCT
TGGCAGATCAGAAACACAAGAATGCATCTACTACAACGCTAATTGGGAGAAAGATAAAACAAATCGCAGTGGCATTGAA
CCCTGTTATGGAGATAAAGATAAAAGACGACACTGTTTTGCTACATGGAAGAATATTTCTGGATCAATTGAAATCGTGA
AACAAGGTTGCTGGCTGGATGACATCAACTGTTACGACAGGAATGATTGCATTGAGAAAAAAGACAGCCCTGAAGTGTT
CTTCTGTTGTTGTGAAGGCAACATGTGTAATGAACGCTTCTTCTATTTTCCAGAAATGGAGGTCACACAGCCAACTTCC
AATCCAGTCACACCGAAGCCACCTCTATTCAATACCTTGCTTTATTCATTGGTGCCTATAATGGGAATTGCAGTGATTG
TGCTCTTTTCATTTTGGATGTACAGACATCACAAGCTAGCATATCCTCCAGTACTTGTTCCAACCCAAGATCCTGGACC
ACCACCGCCTTCACCATTGATGGGTTTGAAGCCACTGCAGTTGCTAGAGATCAAAGCCAGGGGACGATTTGGGTGTGTG
TGGAAAGCTCAGCTGCTGAATGAGTATGTTGCAGTCAAAATATTCCCTATCCAGGACAAACAGTCGTGGCAGAATGAAT
ATGAAATTTACAGCCTACCTGGAATGAAGCATGACAATATTTTACAGTTCATCGGTGCAGAGAAGCGAGGCACCAGCAT
TGATGTGGACCTCTGGTTAATTACAGCTTTTCACGAAAAGGGTTCATTAACTGACTTCCTCAAGGCTAACGTGGTTTCC
TGGAATGAGCTGTGTCACATTGCTCAGACTATGGCTCGAGGCTTGGCTTATCTCCATGAGGATATACCAGGGCTAAAAG
ACGGACATAAACCCGCCATCTCACACAGGGACATCAAAAGCAAGAATGTGCTGCTGAAAAACAACCTTACAGCTTGCAT
TGCTGATTTTGGTCTAGCTTTAAAGTTTGAGGCTGGAAAATCTGCAGGAGATACACATGGACAGGTTGGCACACGAAGG
TACATGGCTCCTGAGGTACTAGAAGGTGCTATAAACTTCCAAAGGGATGCGTTTTTGAGAATAGACATGTATGCCATGG
GCTTGGTCCTCTGGGAGCTGGCATCGCGCTGCACTGCCTCAGATGGCCCAGTAGATGAGTACATGTTGCCATTTGAAGA
AGAAATTGGCCAGCATCCTTCCCTTGAAGACATGCAGGAAGTTGTGGTTCATAAAAAGAAGAGACCTGTTTTAAGAGAG
TGTTGGCAAAAGCATTCTGGAATGGCGATGCTCTGTGAAACCATCGAGGAGTGCTGGGATCACGACGCAGAAGCCAGGC
TGTCGGCGGGGTGCGTAGAAGAACGCATTATTCAGATGCAAAAATTAACTAACATTATAACAACAGAGGACATTGTGAC
TGTGGTCACGATGGTGACAAACGTTGACTTTCCTCCCAAAGAATCCAGTCTATGATAGTTGCACTGGTCACGTAACTGA
CCAACGGGACTCTTCACTGGAGCTGCTAAAGCTAACGGGACTGCTGTCGTCATTGTGTTCTGTGTGAAGCGACCGCGGG
GTCTCTGGGAGCATCGTCAGGAGGTGTTTCCCTTTCTGCTCCCCCTCCTCCTCCCACACACGAATCCATGAGACTTTCT
GCATTCCCTGCTTACGCCGGAAGCGCGCGTGCTGAGAGGTGGCAGTGGGCCGTTCAGGGCCTGAAGCAAAGAGCGGACC
TGGACGGGCTAACTGAGCGTTTTAAAAACTGACATCAGATTTCTTAATAGCCGTCAGAAGAGACTAATTCCTTAAATGA
ACTACTGTTATTTTTTTTAAATCAAACATTT
CitationGarcía-Castro MI, Vielmetter E, Bronner-Fraser M. N-Cadherin, a cell adhesion molecule involved in establishment of embryonic left-right asymmetry. Science. 2000 May 12;288(5468):1047-51.
CopyrightCopyright © 2000, The American Association for the Advancement of Science
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # NM_205367.1)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 1
  
4
stage 4
Hensen's Node
Primitive Streak
 

Mouse

EmageMGI:102806
MGI GXDMGI:102806

Frog

Xenbase484011

Fruit Fly

BDGPFBgn0003169

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-980526-227, ZDB-GENE-120215-23
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