GEISHA - A Chicken Embryo Gene Expression Database
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BARX2
BARX homeobox 2

Gene
Official SymbolBARX2
Official Full NameBARX homeobox 2
CGNC ID813
also known asBARX2B, homeobox protein BarH-like 2|BarH-like homeobox 2|homeodomain transcription factor BARX2B, Barx2
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204896
PolypeptideNP_990227
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.3060
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human8538ENSG00000043039MIM:604823
Mouse12023ENSMUSG00000032033All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(2) MGI:109617
Xenopus100488405852580
Zebrafish100002200ENSDARG00000041098ZDB-GENE-081120-4ZFIN:ZDB-GENE-081120-4
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene395714
Ensembl Gene
KEGGgga:395714

Entry 1

GEISHA IdBARX2.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
CCAGGNTCACACGGAGCATGAGACTACTGCCTCCTGACTCTGAGCCTGGCTGTTCATTTTCTCTTCTGCTTCAATTTCC
TCTGAGGTGGGAATGGAGTTTTTCTTTGGACGGCCTTTGGGCTTTGTTGGAGCTTCCTGCCCACCTTTCAACACCATTT
TCTTCCACTTCATCCTGCGGTTCTGGTACCACGTCTTCACCTGGAGCTGAGTCAGCCCCAGCGACTGCGCTAAGTCAAG
CCTGTCGGGTGTAGACAAATACTTTTGCTTCTGGAATTTCTTCTCCAAGCCCATCAGTTGGAGCTCTGTGAAGATGGTC
CGACTCCGGCGTGGCTTTTTTAACCGAGGTGTGGGCTGCTCTGCCTCCGACTCGCTGCTGCCGTGGGTCTCGCTGGCTG
GCGTCTCCGAGCTCGCGGTGGCTGAGGTCTGAGCTGGCAGCACATGGGAGCTGGTGGCAGCCGGAACGAGGTGAGGGAC
CACGGAGGGCTGCCTGGTGATAACGGAGATGAGAGGATATGCCCTCAGAGAAGGGGACCCCGCGCAGGAGTGCAGCGGC
TTGGGCCGGACCAGGAGGGACGGACAGACGGAATAAANGGGAAAGTAAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
Primitive Streak
Low level expression.
4-6
stage 4
stage 5
Early Mesoderm
Primitive Streak
 
13-18
stage 13
stage 15
stage 18
Blood Vessels
Forebrain
Head Mesenchyme
Lateral Plate Mesoderm
Lung
Midgut
Somites
 
19-24
stage 22
stage 23
Eye
Face Mesenchyme
Head Mesenchyme
Leg Mesenchyme
Pharyngeal Arches and Clefts
Somatic Mesoderm
Somites
Wing Mesenchyme
 
25
stage 25
stage 25
stage 25
Eye
Face Mesenchyme
Leg Mesenchyme
Nasal Placode/Nerve
Oral Pharynx
Pharyngeal Arches and Clefts
Somatic Mesoderm
Somites
Wing Mesenchyme
 

Entry 2

GEISHA IdBarx2.Noden.2006Data SourcePublication
Complete cDNA Template Probeshow
AAGTNGGAGTCCACGCGGTGGCGGCCGCCGCCGCCCTAGGCAGCCCCGCGCAGCCCCGCGGCCCCGGGGCCGGCCATGC
ACTGCCCGCCGCAGCCCCGGCTCGCCAAGGCAGGCAGGAGGCGCTACAAGACTTTCATGATCGACGAAATTCTCTCCAA
GGAGACGTGCGATTACTTCGAGAAACTTTCCCTCTATTCCGTCTGTCCGTCCCTCCTGGTCCGGCCCAAGCCGCTGCAC
TCCTGCGCGGGGTCCCCTTCTCTGAGGGCATATCCTCTCATCTCCGTTATCACCAGGCAGCCCTCCGTGGTCCCTCACC
TCGTTCCGGCTGCCACCAGCTCCCATGTGCTGCCAGCTCAGACCTCAGCCACCGCGAGCTCGGAGACGCCAGCCAGCGA
GACCCACGGCAGCAGCGAGTCGGAGGCAGAGCAGCCCACACCTCGGTTAAAAAAGCCACGCCGGAGTCGGACCATCTTC
ACAGAGCTCCAACTGATGGGCTTGGAGAAGAAATTCCAGAAGCAAAAGTATTTGTCTACACCCGACAGGCTTGACTTAG
CGCAGTCGCTGGGGCTGACTCAGCTCCAGGTGAAGACGTGGTACCAGAACCGCAGGATGAAGTGGAAGAAAATGGTGTT
GAAAGGTGGGCAGGAAGCTCCAACAAAGCCCAAAGGCCGTCCAAAGAAAAACTCCATTCCCACCTCAGAGGAAATTGAA
GCAGAAGAGAAAATGAACAGCCAGGCTCAGAGTCAGGAGGCAGAGGGATCTCAAGCCCCCGAGGAGCCTAAAGTGACAG
AGGAGAAGCCAGAAGTCTCTTTGGAGACAGAAGAGTCTCCAGAACATATAGCAGAGCCCTCCTCAGAGGAGGTTACGCC
ATTAAGTTAAAAGGGAAAAAGAGAAGGGAAAGGG
CitationNoden DM, Francis-West P. The differentiation and morphogenesis of craniofacial muscles. Dev Dyn. 2006 May;235(5):1194-218. Review.
CopyrightCopyright © 2006 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204896).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-16
stage 16
Head Mesenchyme
Head Muscles
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.3060

Mouse

EmageMGI:109617
EurexpressMGI:109617
MGI GXDMGI:109617

Frog

Xenbase852580

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-081120-4
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