GEISHA - A Chicken Embryo Gene Expression Database
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FOXG1
forkhead box G1

The human orthologue of this gene is associated
with the following human disease:
Gene
Official SymbolFOXG1
Official Full Nameforkhead box G1
CGNC ID49654
also known asCBF-1, forkhead box protein G1|BF-1|BF1|CEQ 3-1|N-62-5|brain factor-1|forkhead-related protein FKHL1|proto-oncogene C-QIN, Forkhead-related protein FKHL1, Transcription factor BF-1, Brain factor 1, Forkhead box protein G1B, Qin1 , BF1 transcription factor, Proto- oncogene C-QIN
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_205193
PolypeptideNP_990524
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.657
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human2290MIM:613454MIM:164874
Mouse15228ENSMUSG00000020950All phenotypic alleles (4):Targeted, knock-out(1) Targeted, other(3) MGI:1347464
Xenopus100144706, 373732480075
Zebrafish30274ENSDARG00000070769ZDB-GENE-990415-267ZFIN:ZDB-GENE-990415-267
Gene Ontology
Molecular Functionsequence-specific DNA binding, sequence-specific DNA binding transcription factor activity
Biological Processmulticellular organismal development, transcription, DNA-templated
Cellular Componentnucleus
Links to other databases
Entrez Gene396110
Ensembl Gene
KEGGgga:396110

Entry 1

GEISHA IdBF1QinData SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
CTCTGAAATTAATTGCGGCCGGGGCGCTCCGTATAGCCGGCTCCTCTCCGACCCGCGGCGCGTCCTCCCCCCTACACCG
GTTTACCGGGGGAACCGGCACCATGAAGTAGCTTTTTTTTTTTTTTTTTTTTTTGTATGTATGCGTGTGCGCGCGGTGT
TGGGGTTTTTTTTGTTGTTGTTTGGTTTTTAGAGGGCTCTTTTACTCCTTTTTCCTCCTCTTTTTTCCCCTTCGTTCCG
GCTCTCTCCGCTCGGTGACCGCTGCCGCCGTCCCCCGCCCGTGCTACATGCCGTGCCAGCGCCCGACGCTGCGTTCCCG
CCGCGCCGCCGCCGCCGCCGGTGGTGCCGCCGCCCGCCCGGCCCCCGCCCGCCCGGCCCCGGCCGCCGCCAGCCGCCCC
CTCGGCGCAGCGTGTGATGTTGGACATGGGAGATAGGAAGGAAGTGAAAATGCTGCCCAAGTCCTCCTTCAGCATCAAC
AGCCTGGTGCCCGAAGCCGTGCAGAGCGACAACCACAGCGGCCACAGCCACCACAACAGCCACCATCCGCACCACCACC
ACCACCACCACCACCACCACCCGCCGCCGCCGCAACAGCCCCAGCGCGCCGCCGCGGCCGAAGAAGAGGACGAGGAGAA
GGCGCCGTTGCTGCTGCCGCCGCCCGCCGCCGGCGCCCTGGAGGCGGCTAAGGCCGAGGCGCTGGCGGGGAAGGGCGAG
GCGGGCGCGGCGGCGGCGGAGCTGGAGGAGAAGGAGAAGGCGGCCGAGGAGAAGAAGGGGGCGGCCGAGGGGGGCAAGG
ACGGGGAGAGCGGCAAGGAGGGCGAGAAGAAGAACGGCAAGTACGAGAAGCCGCCGTTCAGCTACAACGCGCTCATCAT
GATGGCCATCCGGCAGAGCCCCGAGAAGCGCCTGACGCTCAACGGCATCTACGAGTTCATCATGAAGAACTTCCCATAC
TACCGGGAGAACAAGCAGGGCTGGCAGAACTCCATCCGCCACAACCTCTCTCTCAATAAGTGCTTCGTCAAGGTGCCCC
GCCACTACGACGACCCGGGCAAAGGGAACTACTGGATGCTGGACCCGTCCAGCGACGACGTCTTCATCGGGGGCACCAC
GGGCAAACTGCGCCGGCGCTCCACCACTTCGCGGGCCAAGCTGGCCTTCAAGCGCGGCGCCCGCCTCACCTCCACCGGC
CTCACCTTCATGGACCGGGCGGGGTCCCTCTACTGGCCCATGTCCCCCTTTCTGTCCCTGCACCACCCGCGGGCCAGCA
GCACGCTGAGCTACAACGGGACGGCGTCCGCCTACCCCAGCCACCCCATGCCCTACAGCTCGGTGTTGACTCAGAACTC
CTTGGGGAACAATCACTCCTTTTCCACGTCCAACGGGTTGAGCGTCGATAGACTCGTCAACGGGGAGATCCCCTACGCC
ACTCACCACCTCACGGCCGCCGCCCTGGCCGCCTCGGTGCCGTGCGGCTTGTCGGTCCCCTGCTCCGGCACCTACTCCC
TAAACCCCTGCTCCGTGAACCTCCTGGCGGGACAGACGAGTTACTTTTTCCCCCACGTCCCTCACCCCTCAATGACTTC
TCAGAGCAGCACTTCGATGACGGCCAGGGCCGCCTCTTCGTCCACATCGCCGCAGGCACCCTCCACCCTGCCCTGCGAG
TCCCTAAGACCCTCTTTGCCGAGTTTCACGACGGGACTCTCCGGAGGACTCTCCGATTATTTCACACATCAAAATCAGG
GGTCTTCTTCCAACCCTTTAATACATTAACGTCCATGGGATCAGACTGTAAGTGAACATTTTACACACGTTCGCGTTGT
AAATGATGATTGAAAAGAGAAAAAAAAGAAAAAGGAAAAAAAAAAAAAAGAAAAACAAAAAAGCCC
CommentsImages provided by Susan Chapman
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 7
stage 8
stage 11
Ear/Otic Placcode
Forebrain
Telencephalon
otic
13-16
stage 16
Ear/Otic Placcode
Endoderm, early
Pharyngeal Arches and Clefts
Telencephalon
otic

Entry 2

GEISHA IdQIN.Chapman.2002Data SourcePublication
Complete cDNA Template Probeshow
CTCTGAAATTAATTGCGGCCGGGGCGCTCCGTATAGCCGGCTCCTCTCCGACCCGCGGCGCGTCCTCCCCCCTACACCG
GTTTACCGGGGGAACCGGCACCATGAAGTAGCTTTTTTTTTTTTTTTTTTTTTTGTATGTATGCGTGTGCGCGCGGTGT
TGGGGTTTTTTTTGTTGTTGTTTGGTTTTTAGAGGGCTCTTTTACTCCTTTTTCCTCCTCTTTTTTCCCCTTCGTTCCG
GCTCTCTCCGCTCGGTGACCGCTGCCGCCGTCCCCCGCCCGTGCTACATGCCGTGCCAGCGCCCGACGCTGCGTTCCCG
CCGCGCCGCCGCCGCCGCCGGTGGTGCCGCCGCCCGCCCGGCCCCCGCCCGCCCGGCCCCGGCCGCCGCCAGCCGCCCC
CTCGGCGCAGCGTGTGATGTTGGACATGGGAGATAGGAAGGAAGTGAAAATGCTGCCCAAGTCCTCCTTCAGCATCAAC
AGCCTGGTGCCCGAAGCCGTGCAGAGCGACAACCACAGCGGCCACAGCCACCACAACAGCCACCATCCGCACCACCACC
ACCACCACCACCACCACCACCCGCCGCCGCCGCAACAGCCCCAGCGCGCCGCCGCGGCCGAAGAAGAGGACGAGGAGAA
GGCGCCGTTGCTGCTGCCGCCGCCCGCCGCCGGCGCCCTGGAGGCGGCTAAGGCCGAGGCGCTGGCGGGGAAGGGCGAG
GCGGGCGCGGCGGCGGCGGAGCTGGAGGAGAAGGAGAAGGCGGCCGAGGAGAAGAAGGGGGCGGCCGAGGGGGGCAAGG
ACGGGGAGAGCGGCAAGGAGGGCGAGAAGAAGAACGGCAAGTACGAGAAGCCGCCGTTCAGCTACAACGCGCTCATCAT
GATGGCCATCCGGCAGAGCCCCGAGAAGCGCCTGACGCTCAACGGCATCTACGAGTTCATCATGAAGAACTTCCCATAC
TACCGGGAGAACAAGCAGGGCTGGCAGAACTCCATCCGCCACAACCTCTCTCTCAATAAGTGCTTCGTCAAGGTGCCCC
GCCACTACGACGACCCGGGCAAAGGGAACTACTGGATGCTGGACCCGTCCAGCGACGACGTCTTCATCGGGGGCACCAC
GGGCAAACTGCGCCGGCGCTCCACCACTTCGCGGGCCAAGCTGGCCTTCAAGCGCGGCGCCCGCCTCACCTCCACCGGC
CTCACCTTCATGGACCGGGCGGGGTCCCTCTACTGGCCCATGTCCCCCTTTCTGTCCCTGCACCACCCGCGGGCCAGCA
GCACGCTGAGCTACAACGGGACGGCGTCCGCCTACCCCAGCCACCCCATGCCCTACAGCTCGGTGTTGACTCAGAACTC
CTTGGGGAACAATCACTCCTTTTCCACGTCCAACGGGTTGAGCGTCGATAGACTCGTCAACGGGGAGATCCCCTACGCC
ACTCACCACCTCACGGCCGCCGCCCTGGCCGCCTCGGTGCCGTGCGGCTTGTCGGTCCCCTGCTCCGGCACCTACTCCC
TAAACCCCTGCTCCGTGAACCTCCTGGCGGGACAGACGAGTTACTTTTTCCCCCACGTCCCTCACCCCTCAATGACTTC
TCAGAGCAGCACTTCGATGACGGCCAGGGCCGCCTCTTCGTCCACATCGCCGCAGGCACCCTCCACCCTGCCCTGCGAG
TCCCTAAGACCCTCTTTGCCGAGTTTCACGACGGGACTCTCCGGAGGACTCTCCGATTATTTCACACATCAAAATCAGG
GGTCTTCTTCCAACCCTTTAATACATTAACGTCCATGGGATCAGACTGTAAGTGAACATTTTACACACGTTCGCGTTGT
AAATGATGATTGAAAAGAGAAAAAAAAGAAAAAGGAAAAAAAAAAAAAAGAAAAACAAAAAAGCCC
CitationChapman SC, Schubert FR, Schoenwolf GC, Lumsden A. Analysis of spatial and temporal gene expression patterns in blastula and gastrula stage chick embryos. Dev Biol. 2002 May 1;245(1):187-99.
Copyright2002 Elsevier Science (USA). All rights reserved.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 5
stage 6
Early Endoderm
Early Mesoderm
Head Process
 

Entry 3

GEISHA IdBf1.Chapman.2008Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
CTCTGAAATTAATTGCGGCCGGGGCGCTCCGTATAGCCGGCTCCTCTCCGACCCGCGGCGCGTCCTCCCCCCTACACCG
GTTTACCGGGGGAACCGGCACCATGAAGTAGCTTTTTTTTTTTTTTTTTTTTTTGTATGTATGCGTGTGCGCGCGGTGT
TGGGGTTTTTTTTGTTGTTGTTTGGTTTTTAGAGGGCTCTTTTACTCCTTTTTCCTCCTCTTTTTTCCCCTTCGTTCCG
GCTCTCTCCGCTCGGTGACCGCTGCCGCCGTCCCCCGCCCGTGCTACATGCCGTGCCAGCGCCCGACGCTGCGTTCCCG
CCGCGCCGCCGCCGCCGCCGGTGGTGCCGCCGCCCGCCCGGCCCCCGCCCGCCCGGCCCCGGCCGCCGCCAGCCGCCCC
CTCGGCGCAGCGTGTGATGTTGGACATGGGAGATAGGAAGGAAGTGAAAATGCTGCCCAAGTCCTCCTTCAGCATCAAC
AGCCTGGTGCCCGAAGCCGTGCAGAGCGACAACCACAGCGGCCACAGCCACCACAACAGCCACCATCCGCACCACCACC
ACCACCACCACCACCACCACCCGCCGCCGCCGCAACAGCCCCAGCGCGCCGCCGCGGCCGAAGAAGAGGACGAGGAGAA
GGCGCCGTTGCTGCTGCCGCCGCCCGCCGCCGGCGCCCTGGAGGCGGCTAAGGCCGAGGCGCTGGCGGGGAAGGGCGAG
GCGGGCGCGGCGGCGGCGGAGCTGGAGGAGAAGGAGAAGGCGGCCGAGGAGAAGAAGGGGGCGGCCGAGGGGGGCAAGG
ACGGGGAGAGCGGCAAGGAGGGCGAGAAGAAGAACGGCAAGTACGAGAAGCCGCCGTTCAGCTACAACGCGCTCATCAT
GATGGCCATCCGGCAGAGCCCCGAGAAGCGCCTGACGCTCAACGGCATCTACGAGTTCATCATGAAGAACTTCCCATAC
TACCGGGAGAACAAGCAGGGCTGGCAGAACTCCATCCGCCACAACCTCTCTCTCAATAAGTGCTTCGTCAAGGTGCCCC
GCCACTACGACGACCCGGGCAAAGGGAACTACTGGATGCTGGACCCGTCCAGCGACGACGTCTTCATCGGGGGCACCAC
GGGCAAACTGCGCCGGCGCTCCACCACTTCGCGGGCCAAGCTGGCCTTCAAGCGCGGCGCCCGCCTCACCTCCACCGGC
CTCACCTTCATGGACCGGGCGGGGTCCCTCTACTGGCCCATGTCCCCCTTTCTGTCCCTGCACCACCCGCGGGCCAGCA
GCACGCTGAGCTACAACGGGACGGCGTCCGCCTACCCCAGCCACCCCATGCCCTACAGCTCGGTGTTGACTCAGAACTC
CTTGGGGAACAATCACTCCTTTTCCACGTCCAACGGGTTGAGCGTCGATAGACTCGTCAACGGGGAGATCCCCTACGCC
ACTCACCACCTCACGGCCGCCGCCCTGGCCGCCTCGGTGCCGTGCGGCTTGTCGGTCCCCTGCTCCGGCACCTACTCCC
TAAACCCCTGCTCCGTGAACCTCCTGGCGGGACAGACGAGTTACTTTTTCCCCCACGTCCCTCACCCCTCAATGACTTC
TCAGAGCAGCACTTCGATGACGGCCAGGGCCGCCTCTTCGTCCACATCGCCGCAGGCACCCTCCACCCTGCCCTGCGAG
TCCCTAAGACCCTCTTTGCCGAGTTTCACGACGGGACTCTCCGGAGGACTCTCCGATTATTTCACACATCAAAATCAGG
GGTCTTCTTCCAACCCTTTAATACATTAACGTCCATGGGATCAGACTGTAAGTGAACATTTTACACACGTTCGCGTTGT
AAATGATGATTGAAAAGAGAAAAAAAAGAAAAAGGAAAAAAAAAAAAAAGAAAAACAAAAAAGCCC
CommentsInsufficient information provided by submitter to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # NM_205193.1). Images Provided by Susan Chapman
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 5
stage 6
stage 6
Forebrain
 
7-12
stage 7
stage 8
stage 9
stage 10
stage 10
stage 11
Ear/Otic Placcode
Forebrain
 
13-15
stage 15
stage 15
Ear/Otic Placcode
Forebrain
Pharyngeal Arches and Clefts
Unlabeled
 

Entry 4

GEISHA IdQin.Chapman.2008Data SourceDirect Submission
Complete cDNA Template Probeshow
CTCTGAAATTAATTGCGGCCGGGGCGCTCCGTATAGCCGGCTCCTCTCCGACCCGCGGCGCGTCCTCCCCCCTACACCG
GTTTACCGGGGGAACCGGCACCATGAAGTAGCTTTTTTTTTTTTTTTTTTTTTTGTATGTATGCGTGTGCGCGCGGTGT
TGGGGTTTTTTTTGTTGTTGTTTGGTTTTTAGAGGGCTCTTTTACTCCTTTTTCCTCCTCTTTTTTCCCCTTCGTTCCG
GCTCTCTCCGCTCGGTGACCGCTGCCGCCGTCCCCCGCCCGTGCTACATGCCGTGCCAGCGCCCGACGCTGCGTTCCCG
CCGCGCCGCCGCCGCCGCCGGTGGTGCCGCCGCCCGCCCGGCCCCCGCCCGCCCGGCCCCGGCCGCCGCCAGCCGCCCC
CTCGGCGCAGCGTGTGATGTTGGACATGGGAGATAGGAAGGAAGTGAAAATGCTGCCCAAGTCCTCCTTCAGCATCAAC
AGCCTGGTGCCCGAAGCCGTGCAGAGCGACAACCACAGCGGCCACAGCCACCACAACAGCCACCATCCGCACCACCACC
ACCACCACCACCACCACCACCCGCCGCCGCCGCAACAGCCCCAGCGCGCCGCCGCGGCCGAAGAAGAGGACGAGGAGAA
GGCGCCGTTGCTGCTGCCGCCGCCCGCCGCCGGCGCCCTGGAGGCGGCTAAGGCCGAGGCGCTGGCGGGGAAGGGCGAG
GCGGGCGCGGCGGCGGCGGAGCTGGAGGAGAAGGAGAAGGCGGCCGAGGAGAAGAAGGGGGCGGCCGAGGGGGGCAAGG
ACGGGGAGAGCGGCAAGGAGGGCGAGAAGAAGAACGGCAAGTACGAGAAGCCGCCGTTCAGCTACAACGCGCTCATCAT
GATGGCCATCCGGCAGAGCCCCGAGAAGCGCCTGACGCTCAACGGCATCTACGAGTTCATCATGAAGAACTTCCCATAC
TACCGGGAGAACAAGCAGGGCTGGCAGAACTCCATCCGCCACAACCTCTCTCTCAATAAGTGCTTCGTCAAGGTGCCCC
GCCACTACGACGACCCGGGCAAAGGGAACTACTGGATGCTGGACCCGTCCAGCGACGACGTCTTCATCGGGGGCACCAC
GGGCAAACTGCGCCGGCGCTCCACCACTTCGCGGGCCAAGCTGGCCTTCAAGCGCGGCGCCCGCCTCACCTCCACCGGC
CTCACCTTCATGGACCGGGCGGGGTCCCTCTACTGGCCCATGTCCCCCTTTCTGTCCCTGCACCACCCGCGGGCCAGCA
GCACGCTGAGCTACAACGGGACGGCGTCCGCCTACCCCAGCCACCCCATGCCCTACAGCTCGGTGTTGACTCAGAACTC
CTTGGGGAACAATCACTCCTTTTCCACGTCCAACGGGTTGAGCGTCGATAGACTCGTCAACGGGGAGATCCCCTACGCC
ACTCACCACCTCACGGCCGCCGCCCTGGCCGCCTCGGTGCCGTGCGGCTTGTCGGTCCCCTGCTCCGGCACCTACTCCC
TAAACCCCTGCTCCGTGAACCTCCTGGCGGGACAGACGAGTTACTTTTTCCCCCACGTCCCTCACCCCTCAATGACTTC
TCAGAGCAGCACTTCGATGACGGCCAGGGCCGCCTCTTCGTCCACATCGCCGCAGGCACCCTCCACCCTGCCCTGCGAG
TCCCTAAGACCCTCTTTGCCGAGTTTCACGACGGGACTCTCCGGAGGACTCTCCGATTATTTCACACATCAAAATCAGG
GGTCTTCTTCCAACCCTTTAATACATTAACGTCCATGGGATCAGACTGTAAGTGAACATTTTACACACGTTCGCGTTGT
AAATGATGATTGAAAAGAGAAAAAAAAGAAAAAGGAAAAAAAAAAAAAAGAAAAACAAAAAAGCCC
Comments Insufficient information provided by submitter to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # NM_205193.1) Images Provided by Susan Chapman.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4
stage 4
Head Process
Chordin=red
Qin=blue

Entry 5

GEISHA IdQIN.Bell.2001Data SourcePublication
Complete cDNA Template Probeshow
CTCTGAAATTAATTGCGGCCGGGGCGCTCCGTATAGCCGGCTCCTCTCCGACCCGCGGCGCGTCCTCCCCCCTACACCG
GTTTACCGGGGGAACCGGCACCATGAAGTAGCTTTTTTTTTTTTTTTTTTTTTTGTATGTATGCGTGTGCGCGCGGTGT
TGGGGTTTTTTTTGTTGTTGTTTGGTTTTTAGAGGGCTCTTTTACTCCTTTTTCCTCCTCTTTTTTCCCCTTCGTTCCG
GCTCTCTCCGCTCGGTGACCGCTGCCGCCGTCCCCCGCCCGTGCTACATGCCGTGCCAGCGCCCGACGCTGCGTTCCCG
CCGCGCCGCCGCCGCCGCCGGTGGTGCCGCCGCCCGCCCGGCCCCCGCCCGCCCGGCCCCGGCCGCCGCCAGCCGCCCC
CTCGGCGCAGCGTGTGATGTTGGACATGGGAGATAGGAAGGAAGTGAAAATGCTGCCCAAGTCCTCCTTCAGCATCAAC
AGCCTGGTGCCCGAAGCCGTGCAGAGCGACAACCACAGCGGCCACAGCCACCACAACAGCCACCATCCGCACCACCACC
ACCACCACCACCACCACCACCCGCCGCCGCCGCAACAGCCCCAGCGCGCCGCCGCGGCCGAAGAAGAGGACGAGGAGAA
GGCGCCGTTGCTGCTGCCGCCGCCCGCCGCCGGCGCCCTGGAGGCGGCTAAGGCCGAGGCGCTGGCGGGGAAGGGCGAG
GCGGGCGCGGCGGCGGCGGAGCTGGAGGAGAAGGAGAAGGCGGCCGAGGAGAAGAAGGGGGCGGCCGAGGGGGGCAAGG
ACGGGGAGAGCGGCAAGGAGGGCGAGAAGAAGAACGGCAAGTACGAGAAGCCGCCGTTCAGCTACAACGCGCTCATCAT
GATGGCCATCCGGCAGAGCCCCGAGAAGCGCCTGACGCTCAACGGCATCTACGAGTTCATCATGAAGAACTTCCCATAC
TACCGGGAGAACAAGCAGGGCTGGCAGAACTCCATCCGCCACAACCTCTCTCTCAATAAGTGCTTCGTCAAGGTGCCCC
GCCACTACGACGACCCGGGCAAAGGGAACTACTGGATGCTGGACCCGTCCAGCGACGACGTCTTCATCGGGGGCACCAC
GGGCAAACTGCGCCGGCGCTCCACCACTTCGCGGGCCAAGCTGGCCTTCAAGCGCGGCGCCCGCCTCACCTCCACCGGC
CTCACCTTCATGGACCGGGCGGGGTCCCTCTACTGGCCCATGTCCCCCTTTCTGTCCCTGCACCACCCGCGGGCCAGCA
GCACGCTGAGCTACAACGGGACGGCGTCCGCCTACCCCAGCCACCCCATGCCCTACAGCTCGGTGTTGACTCAGAACTC
CTTGGGGAACAATCACTCCTTTTCCACGTCCAACGGGTTGAGCGTCGATAGACTCGTCAACGGGGAGATCCCCTACGCC
ACTCACCACCTCACGGCCGCCGCCCTGGCCGCCTCGGTGCCGTGCGGCTTGTCGGTCCCCTGCTCCGGCACCTACTCCC
TAAACCCCTGCTCCGTGAACCTCCTGGCGGGACAGACGAGTTACTTTTTCCCCCACGTCCCTCACCCCTCAATGACTTC
TCAGAGCAGCACTTCGATGACGGCCAGGGCCGCCTCTTCGTCCACATCGCCGCAGGCACCCTCCACCCTGCCCTGCGAG
TCCCTAAGACCCTCTTTGCCGAGTTTCACGACGGGACTCTCCGGAGGACTCTCCGATTATTTCACACATCAAAATCAGG
GGTCTTCTTCCAACCCTTTAATACATTAACGTCCATGGGATCAGACTGTAAGTGAACATTTTACACACGTTCGCGTTGT
AAATGATGATTGAAAAGAGAAAAAAAAGAAAAAGGAAAAAAAAAAAAAAGAAAAACAAAAAAGCCC
CitationBell E, Ensini M, Gulisano M, Lumsden A. Dynamic domains of gene expression in the early avian forebrain. Dev Biol. 2001 Aug 1;236(1):76-88.
CopyrightCopyright © 2001 Academic Press All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205193.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 8
stage 9
stage 10
stage 12
Forebrain
Telencephalon
Neural Folds
Prosencephalon
13-18
stage 13
stage 13
Telencephalon
Expression patterns of qin, Emx1, Emx2, and Pax6 along the A-P axis of the prosencephalon during early development.
19
stage 19
stage 19
Telencephalon
FIG. 3. Expression of Emx2, Emx1, and qin at HH17 and HH19.

Entry 6

GEISHA IdFoxG1.Ahlgren.2003Data SourcePublication
Complete cDNA Template Probeshow
CTCTGAAATTAATTGCGGCCGGGGCGCTCCGTATAGCCGGCTCCTCTCCGACCCGCGGCGCGTCCTCCCCCCTACACCG
GTTTACCGGGGGAACCGGCACCATGAAGTAGCTTTTTTTTTTTTTTTTTTTTTTGTATGTATGCGTGTGCGCGCGGTGT
TGGGGTTTTTTTTGTTGTTGTTTGGTTTTTAGAGGGCTCTTTTACTCCTTTTTCCTCCTCTTTTTTCCCCTTCGTTCCG
GCTCTCTCCGCTCGGTGACCGCTGCCGCCGTCCCCCGCCCGTGCTACATGCCGTGCCAGCGCCCGACGCTGCGTTCCCG
CCGCGCCGCCGCCGCCGCCGGTGGTGCCGCCGCCCGCCCGGCCCCCGCCCGCCCGGCCCCGGCCGCCGCCAGCCGCCCC
CTCGGCGCAGCGTGTGATGTTGGACATGGGAGATAGGAAGGAAGTGAAAATGCTGCCCAAGTCCTCCTTCAGCATCAAC
AGCCTGGTGCCCGAAGCCGTGCAGAGCGACAACCACAGCGGCCACAGCCACCACAACAGCCACCATCCGCACCACCACC
ACCACCACCACCACCACCACCCGCCGCCGCCGCAACAGCCCCAGCGCGCCGCCGCGGCCGAAGAAGAGGACGAGGAGAA
GGCGCCGTTGCTGCTGCCGCCGCCCGCCGCCGGCGCCCTGGAGGCGGCTAAGGCCGAGGCGCTGGCGGGGAAGGGCGAG
GCGGGCGCGGCGGCGGCGGAGCTGGAGGAGAAGGAGAAGGCGGCCGAGGAGAAGAAGGGGGCGGCCGAGGGGGGCAAGG
ACGGGGAGAGCGGCAAGGAGGGCGAGAAGAAGAACGGCAAGTACGAGAAGCCGCCGTTCAGCTACAACGCGCTCATCAT
GATGGCCATCCGGCAGAGCCCCGAGAAGCGCCTGACGCTCAACGGCATCTACGAGTTCATCATGAAGAACTTCCCATAC
TACCGGGAGAACAAGCAGGGCTGGCAGAACTCCATCCGCCACAACCTCTCTCTCAATAAGTGCTTCGTCAAGGTGCCCC
GCCACTACGACGACCCGGGCAAAGGGAACTACTGGATGCTGGACCCGTCCAGCGACGACGTCTTCATCGGGGGCACCAC
GGGCAAACTGCGCCGGCGCTCCACCACTTCGCGGGCCAAGCTGGCCTTCAAGCGCGGCGCCCGCCTCACCTCCACCGGC
CTCACCTTCATGGACCGGGCGGGGTCCCTCTACTGGCCCATGTCCCCCTTTCTGTCCCTGCACCACCCGCGGGCCAGCA
GCACGCTGAGCTACAACGGGACGGCGTCCGCCTACCCCAGCCACCCCATGCCCTACAGCTCGGTGTTGACTCAGAACTC
CTTGGGGAACAATCACTCCTTTTCCACGTCCAACGGGTTGAGCGTCGATAGACTCGTCAACGGGGAGATCCCCTACGCC
ACTCACCACCTCACGGCCGCCGCCCTGGCCGCCTCGGTGCCGTGCGGCTTGTCGGTCCCCTGCTCCGGCACCTACTCCC
TAAACCCCTGCTCCGTGAACCTCCTGGCGGGACAGACGAGTTACTTTTTCCCCCACGTCCCTCACCCCTCAATGACTTC
TCAGAGCAGCACTTCGATGACGGCCAGGGCCGCCTCTTCGTCCACATCGCCGCAGGCACCCTCCACCCTGCCCTGCGAG
TCCCTAAGACCCTCTTTGCCGAGTTTCACGACGGGACTCTCCGGAGGACTCTCCGATTATTTCACACATCAAAATCAGG
GGTCTTCTTCCAACCCTTTAATACATTAACGTCCATGGGATCAGACTGTAAGTGAACATTTTACACACGTTCGCGTTGT
AAATGATGATTGAAAAGAGAAAAAAAAGAAAAAGGAAAAAAAAAAAAAAGAAAAACAAAAAAGCCC
CitationAhlgren S, Vogt P, Bronner-Fraser M. Excess FoxG1 causes overgrowth of the neural tube. J Neurobiol. 2003 Dec
CopyrightCopyright © 2009 Wiley Periodicals, Inc., A Wiley Company
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence was obtained from NCBI (acc # NM_205193).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-14
stage 14
stage 14
stage 14
stage 14
Ear/Otic Placode
Telencephalon
 

Entry 7

GEISHA IdFOXG1.Bailey.2006Data SourcePublication
Complete cDNA Template Probeshow
CTCTGAAATTAATTGCGGCCGGGGCGCTCCGTATAGCCGGCTCCTCTCCGACCCGCGGCGCGTCCTCCCCCCTACACCG
GTTTACCGGGGGAACCGGCACCATGAAGTAGCTTTTTTTTTTTTTTTTTTTTTTGTATGTATGCGTGTGCGCGCGGTGT
TGGGGTTTTTTTTGTTGTTGTTTGGTTTTTAGAGGGCTCTTTTACTCCTTTTTCCTCCTCTTTTTTCCCCTTCGTTCCG
GCTCTCTCCGCTCGGTGACCGCTGCCGCCGTCCCCCGCCCGTGCTACATGCCGTGCCAGCGCCCGACGCTGCGTTCCCG
CCGCGCCGCCGCCGCCGCCGGTGGTGCCGCCGCCCGCCCGGCCCCCGCCCGCCCGGCCCCGGCCGCCGCCAGCCGCCCC
CTCGGCGCAGCGTGTGATGTTGGACATGGGAGATAGGAAGGAAGTGAAAATGCTGCCCAAGTCCTCCTTCAGCATCAAC
AGCCTGGTGCCCGAAGCCGTGCAGAGCGACAACCACAGCGGCCACAGCCACCACAACAGCCACCATCCGCACCACCACC
ACCACCACCACCACCACCACCCGCCGCCGCCGCAACAGCCCCAGCGCGCCGCCGCGGCCGAAGAAGAGGACGAGGAGAA
GGCGCCGTTGCTGCTGCCGCCGCCCGCCGCCGGCGCCCTGGAGGCGGCTAAGGCCGAGGCGCTGGCGGGGAAGGGCGAG
GCGGGCGCGGCGGCGGCGGAGCTGGAGGAGAAGGAGAAGGCGGCCGAGGAGAAGAAGGGGGCGGCCGAGGGGGGCAAGG
ACGGGGAGAGCGGCAAGGAGGGCGAGAAGAAGAACGGCAAGTACGAGAAGCCGCCGTTCAGCTACAACGCGCTCATCAT
GATGGCCATCCGGCAGAGCCCCGAGAAGCGCCTGACGCTCAACGGCATCTACGAGTTCATCATGAAGAACTTCCCATAC
TACCGGGAGAACAAGCAGGGCTGGCAGAACTCCATCCGCCACAACCTCTCTCTCAATAAGTGCTTCGTCAAGGTGCCCC
GCCACTACGACGACCCGGGCAAAGGGAACTACTGGATGCTGGACCCGTCCAGCGACGACGTCTTCATCGGGGGCACCAC
GGGCAAACTGCGCCGGCGCTCCACCACTTCGCGGGCCAAGCTGGCCTTCAAGCGCGGCGCCCGCCTCACCTCCACCGGC
CTCACCTTCATGGACCGGGCGGGGTCCCTCTACTGGCCCATGTCCCCCTTTCTGTCCCTGCACCACCCGCGGGCCAGCA
GCACGCTGAGCTACAACGGGACGGCGTCCGCCTACCCCAGCCACCCCATGCCCTACAGCTCGGTGTTGACTCAGAACTC
CTTGGGGAACAATCACTCCTTTTCCACGTCCAACGGGTTGAGCGTCGATAGACTCGTCAACGGGGAGATCCCCTACGCC
ACTCACCACCTCACGGCCGCCGCCCTGGCCGCCTCGGTGCCGTGCGGCTTGTCGGTCCCCTGCTCCGGCACCTACTCCC
TAAACCCCTGCTCCGTGAACCTCCTGGCGGGACAGACGAGTTACTTTTTCCCCCACGTCCCTCACCCCTCAATGACTTC
TCAGAGCAGCACTTCGATGACGGCCAGGGCCGCCTCTTCGTCCACATCGCCGCAGGCACCCTCCACCCTGCCCTGCGAG
TCCCTAAGACCCTCTTTGCCGAGTTTCACGACGGGACTCTCCGGAGGACTCTCCGATTATTTCACACATCAAAATCAGG
GGTCTTCTTCCAACCCTTTAATACATTAACGTCCATGGGATCAGACTGTAAGTGAACATTTTACACACGTTCGCGTTGT
AAATGATGATTGAAAAGAGAAAAAAAAGAAAAAGGAAAAAAAAAAAAAAGAAAAACAAAAAAGCCC
CitationBailey AP, Bhattacharyya S, Bronner-Fraser M, Streit A. Lens specification is the ground state of all sensory placodes, from which FGF promotes olfactory identity. Dev Cell. 2006 Oct;11(4):505-17.
CopyrightCopyright © 2006, Elsevier
CommentsInsufficient information provided in publication to verify exact sequence to synthesize probe. Sequence below was obtained from NCBI (NM_205193).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 16
Ectoderm
Nasal Placcode/Nerve
 
19-20
stage 20
  

Entry 8

GEISHA IdFOXG1.Halilagic.2007Data SourcePublication
Complete cDNA Template Probeshow
CTCTGAAATTAATTGCGGCCGGGGCGCTCCGTATAGCCGGCTCCTCTCCGACCCGCGGCGCGTCCTCCCCCCTACACCG
GTTTACCGGGGGAACCGGCACCATGAAGTAGCTTTTTTTTTTTTTTTTTTTTTTGTATGTATGCGTGTGCGCGCGGTGT
TGGGGTTTTTTTTGTTGTTGTTTGGTTTTTAGAGGGCTCTTTTACTCCTTTTTCCTCCTCTTTTTTCCCCTTCGTTCCG
GCTCTCTCCGCTCGGTGACCGCTGCCGCCGTCCCCCGCCCGTGCTACATGCCGTGCCAGCGCCCGACGCTGCGTTCCCG
CCGCGCCGCCGCCGCCGCCGGTGGTGCCGCCGCCCGCCCGGCCCCCGCCCGCCCGGCCCCGGCCGCCGCCAGCCGCCCC
CTCGGCGCAGCGTGTGATGTTGGACATGGGAGATAGGAAGGAAGTGAAAATGCTGCCCAAGTCCTCCTTCAGCATCAAC
AGCCTGGTGCCCGAAGCCGTGCAGAGCGACAACCACAGCGGCCACAGCCACCACAACAGCCACCATCCGCACCACCACC
ACCACCACCACCACCACCACCCGCCGCCGCCGCAACAGCCCCAGCGCGCCGCCGCGGCCGAAGAAGAGGACGAGGAGAA
GGCGCCGTTGCTGCTGCCGCCGCCCGCCGCCGGCGCCCTGGAGGCGGCTAAGGCCGAGGCGCTGGCGGGGAAGGGCGAG
GCGGGCGCGGCGGCGGCGGAGCTGGAGGAGAAGGAGAAGGCGGCCGAGGAGAAGAAGGGGGCGGCCGAGGGGGGCAAGG
ACGGGGAGAGCGGCAAGGAGGGCGAGAAGAAGAACGGCAAGTACGAGAAGCCGCCGTTCAGCTACAACGCGCTCATCAT
GATGGCCATCCGGCAGAGCCCCGAGAAGCGCCTGACGCTCAACGGCATCTACGAGTTCATCATGAAGAACTTCCCATAC
TACCGGGAGAACAAGCAGGGCTGGCAGAACTCCATCCGCCACAACCTCTCTCTCAATAAGTGCTTCGTCAAGGTGCCCC
GCCACTACGACGACCCGGGCAAAGGGAACTACTGGATGCTGGACCCGTCCAGCGACGACGTCTTCATCGGGGGCACCAC
GGGCAAACTGCGCCGGCGCTCCACCACTTCGCGGGCCAAGCTGGCCTTCAAGCGCGGCGCCCGCCTCACCTCCACCGGC
CTCACCTTCATGGACCGGGCGGGGTCCCTCTACTGGCCCATGTCCCCCTTTCTGTCCCTGCACCACCCGCGGGCCAGCA
GCACGCTGAGCTACAACGGGACGGCGTCCGCCTACCCCAGCCACCCCATGCCCTACAGCTCGGTGTTGACTCAGAACTC
CTTGGGGAACAATCACTCCTTTTCCACGTCCAACGGGTTGAGCGTCGATAGACTCGTCAACGGGGAGATCCCCTACGCC
ACTCACCACCTCACGGCCGCCGCCCTGGCCGCCTCGGTGCCGTGCGGCTTGTCGGTCCCCTGCTCCGGCACCTACTCCC
TAAACCCCTGCTCCGTGAACCTCCTGGCGGGACAGACGAGTTACTTTTTCCCCCACGTCCCTCACCCCTCAATGACTTC
TCAGAGCAGCACTTCGATGACGGCCAGGGCCGCCTCTTCGTCCACATCGCCGCAGGCACCCTCCACCCTGCCCTGCGAG
TCCCTAAGACCCTCTTTGCCGAGTTTCACGACGGGACTCTCCGGAGGACTCTCCGATTATTTCACACATCAAAATCAGG
GGTCTTCTTCCAACCCTTTAATACATTAACGTCCATGGGATCAGACTGTAAGTGAACATTTTACACACGTTCGCGTTGT
AAATGATGATTGAAAAGAGAAAAAAAAGAAAAAGGAAAAAAAAAAAAAAGAAAAACAAAAAAGCCC
CitationHalilagic A, Ribes V, Ghyselinck NB, Zile MH, Dollé P, Studer M. Retinoids control anterior and dorsal properties in the developing forebrain. Dev Bio 2007 Mar 1;303(1):244-58
CopyrightReprinted with permission from Elsevier. Copyright © 2007 Elsevier B.V. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_205193.1). Images are quail, but sequence and map shown are chick.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19
stage 19
stage 19
Telencephalon
quail embryo

Entry 9

GEISHA IdFOXG1.Alonso.2020Data SourcePublication
Complete cDNA Template Probeshow
TTCAAGCGCGGCGCCCGCCTCACCTCCACCGGCCTCACCTTCATGGACCGGGCGGGGTCCCTCTACTGGCCCATGTCCC
CCTTTCTGTCCCTGCACCACCCGCGGGCCAGCAGCACGCTGAGCTACAACGGGACGGCGTCCGCCTACCCCAGCCACCC
CATGCCCTACAGCTCGGTGTTGACTCAGAACTCCTTGGGGAACAATCACTCCTTTTCCACGTCCAACGGGTTGAGCGTC
GATAGACTCGTCAACGGGGAGATCCCCTACGCCACTCACCACCTCACGGCCGCCGCCCTGGCCGCCTCGGTGCCGTGCG
GCTTGTCGGTCCCCTGCTCCGGCACCTACTCCCTAAACCCCTGCTCCGTGAACCTCCTGGCGGGACAGACGAGTTACTT
TTTCCCCCACGTCCCTCACCCCTCAATGACTTCTCAGAGCAGCACTTCGATGACGGCCAGGGCCGCCTCTTCGTCCACA
TCGCCGCAGGCACCCTCCACCCTGCCCTGCGAGTCCCTAAGACCCTCTTTGCCGAGTTTCACGACGGGACTCTCCGGAG
GACTCTCCGATTATTTCACACATCAAAATCAGGGGTCTTCTTCCAACCCTTTAATACATTAACGTCCATGGGATCAGAC
TG
CitationAlonso A, Trujillo CM, Puelles L. Longitudinal developmental analysis of prethalamic eminence derivatives in the chick by mapping of Tbr1 in situ expression. Brain Struct Funct.  2020 Mar;225(2):481-510. Epub 2020 Jan 4. DOI: 10.1007/s00429-019-02015-3.
Copyright© Springer-Verlag GmbH Germany
CommentsThe complete cDNA template sequence was obtained from the information provided in the publication as described in Alonso et al. 2020.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-30
stage 30
stage 30
Forebrain
 
all
 
  

Entry 10

GEISHA IdFOXG1.Freter.2012Data SourcePublication
Complete cDNA Template Probeshow
CTCTGAAATTAATTGCGGCCGGGGCGCTCCGTATAGCCGGCTCCTCTCCGACCCGCGGCGCGTCCTCCCCCCTACACCG
GTTTACCGGGGGAACCGGCACCATGAAGTAGCTTTTTTTTTTTTTTTTTTTTTTGTATGTATGCGTGTGCGCGCGGTGT
TGGGGTTTTTTTTGTTGTTGTTTGGTTTTTAGAGGGCTCTTTTACTCCTTTTTCCTCCTCTTTTTTCCCCTTCGTTCCG
GCTCTCTCCGCTCGGTGACCGCTGCCGCCGTCCCCCGCCCGTGCTACATGCCGTGCCAGCGCCCGACGCTGCGTTCCCG
CCGCGCCGCCGCCGCCGCCGGTGGTGCCGCCGCCCGCCCGGCCCCCGCCCGCCCGGCCCCGGCCGCCGCCAGCCGCCCC
CTCGGCGCAGCGTGTGATGTTGGACATGGGAGATAGGAAGGAAGTGAAAATGCTGCCCAAGTCCTCCTTCAGCATCAAC
AGCCTGGTGCCCGAAGCCGTGCAGAGCGACAACCACAGCGGCCACAGCCACCACAACAGCCACCATCCGCACCACCACC
ACCACCACCACCACCACCACCCGCCGCCGCCGCAACAGCCCCAGCGCGCCGCCGCGGCCGAAGAAGAGGACGAGGAGAA
GGCGCCGTTGCTGCTGCCGCCGCCCGCCGCCGGCGCCCTGGAGGCGGCTAAGGCCGAGGCGCTGGCGGGGAAGGGCGAG
GCGGGCGCGGCGGCGGCGGAGCTGGAGGAGAAGGAGAAGGCGGCCGAGGAGAAGAAGGGGGCGGCCGAGGGGGGCAAGG
ACGGGGAGAGCGGCAAGGAGGGCGAGAAGAAGAACGGCAAGTACGAGAAGCCGCCGTTCAGCTACAACGCGCTCATCAT
GATGGCCATCCGGCAGAGCCCCGAGAAGCGCCTGACGCTCAACGGCATCTACGAGTTCATCATGAAGAACTTCCCATAC
TACCGGGAGAACAAGCAGGGCTGGCAGAACTCCATCCGCCACAACCTCTCTCTCAATAAGTGCTTCGTCAAGGTGCCCC
GCCACTACGACGACCCGGGCAAAGGGAACTACTGGATGCTGGACCCGTCCAGCGACGACGTCTTCATCGGGGGCACCAC
GGGCAAACTGCGCCGGCGCTCCACCACTTCGCGGGCCAAGCTGGCCTTCAAGCGCGGCGCCCGCCTCACCTCCACCGGC
CTCACCTTCATGGACCGGGCGGGGTCCCTCTACTGGCCCATGTCCCCCTTTCTGTCCCTGCACCACCCGCGGGCCAGCA
GCACGCTGAGCTACAACGGGACGGCGTCCGCCTACCCCAGCCACCCCATGCCCTACAGCTCGGTGTTGACTCAGAACTC
CTTGGGGAACAATCACTCCTTTTCCACGTCCAACGGGTTGAGCGTCGATAGACTCGTCAACGGGGAGATCCCCTACGCC
ACTCACCACCTCACGGCCGCCGCCCTGGCCGCCTCGGTGCCGTGCGGCTTGTCGGTCCCCTGCTCCGGCACCTACTCCC
TAAACCCCTGCTCCGTGAACCTCCTGGCGGGACAGACGAGTTACTTTTTCCCCCACGTCCCTCACCCCTCAATGACTTC
TCAGAGCAGCACTTCGATGACGGCCAGGGCCGCCTCTTCGTCCACATCGCCGCAGGCACCCTCCACCCTGCCCTGCGAG
TCCCTAAGACCCTCTTTGCCGAGTTTCACGACGGGACTCTCCGGAGGACTCTCCGATTATTTCACACATCAAAATCAGG
GGTCTTCTTCCAACCCTTTAATACATTAACGTCCATGGGATCAGACTGTAAGTGAACATTTTACACACGTTCGCGTTGT
AAATGATGATTGAAAAGAGAAAAAAAAGAAAAAGGAAAAAAAAAAAAAAGAAAAACAAAAAAGCCC
CitationFreter S, Muta Y, O'Neill P, Vassilev VS, Kuraku S, Ladher RK. Pax2 modulates proliferation during specification of the otic and epibranchial placodes. Dev Dyn. 2012 Nov;241(11):1716-28
CopyrightCopyright © 2012 Wiley Periodicals, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_205193.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-14
stage 14
stage 14
stage 14
Ear/Otic Placode
control = left side of embryo
cross section of figure 4G.
stage 13/14, 16 to 22 somites
stage 13/14, 16 to 22 somites;
all
 
 
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.657

Mouse

EmageMGI:1347464
EurexpressMGI:1347464
MGI GXDMGI:1347464

Frog

Xenbase480075

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-990415-267
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