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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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ARNTL
aryl hydrocarbon receptor nuclear translocator like

Gene

Official Symbol	ARNTL
Official Full Name	aryl hydrocarbon receptor nuclear translocator like
CGNC ID	4005
also known as	BMAL1, aryl hydrocarbon receptor nuclear translocator-like protein 1\|BMAL1b'\|bHLH-PAS transcription factor BMAL1\|brain and muscle ARNT-like 1\|cBMAL1\|clock protein, Arntl , aryl hydrocarbon receptor nuclear translocator-like
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001001463
Polypeptide	NP_001001463
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.1329

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	40162			FBgn0023094
Human	406	ENSG00000133794		MIM:602550
Mouse	11865	ENSMUSG00000055116	All phenotypic alleles (6):Targeted, knock-out(2) Targeted, other(4)	MGI:1096381
Xenopus	100422809, 497632			495454
Zebrafish	58098, 352935	ENSDARG00000006791, ENSDARG00000035732	ZDB-GENE-000509-1, ZDB-GENE-030408-1	ZFIN:ZDB-GENE-000509-1, ZFIN:ZDB-GENE-030408-1

Gene Ontology

Molecular Function	DNA binding, protein dimerization activity, sequence-specific DNA binding transcription factor activity, more...signal transducer activity
Biological Process	rhythmic process, transcription, DNA-templated
Cellular Component	cytoplasm, nucleus, transcription factor complex

Links to other databases

Entrez Gene	374115
Ensembl Gene
KEGG	gga:374115

Entry 1

GEISHA Id	ARNTL.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	TGACTTGATTTCCAGTTCCCTTAGC
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGGCCTTCCTATTTTTCCTGCCCC	cDNA Template Length	1450
Forward cDNA Template Probe	show GGCCGGATCGCCACTCTTTTCTCCGGATTCCCGGACGTAGGATGGCTCCTTTTTGGGCCGCCTTCTCCTGCCTGAAGCA CGCTGTCCATGCTATGTGGAGAAGCTGCAAGCTGTGGGAAGGCTGCGTCTCCGCTATCAAGTACACTGGTGGAAACAAC AGTATTTGTTGAGACAATGTATTCTACTTCTTTGGTCCAAGGGTTCATGAAACTGAACCAGCGACTCCTCAAGGTAATA AAAGAACCGTCTTTTATTTTAAACTTGTAGCAGTTTGTTGTAATTTTTTCTCTTGTCTGCAAAACTTGTCTATGACATT CTGCAAGATGTCCTATATCATCTTGATGGAAATATTCATAACACGAAGTACCTAGAAGTTCCTGGGGTAAGTATGCCAG AATGGCTGTCGCCCTCTGGTCTACAAAAACAAACTTCCCATCTATTGCATGTCGAGAAACATACTCTGTAGGTTTCACC CTGATCTCACCGTTGACTGGCTGTGGTACTACATGAGGATGCAGCCGACCAATTGCAACAAGGGAGCTTAAATTACAAC CCTCGTTATCTGGCTCGTTATCTTCATCTAGTCCCATTTTTGTTGGTGGCCAGCTTTTTAAATATCCCCCACTGTGGAT AGTGCAGAAGCTTTTGCGGTCTGCTTTCTTCTTTGAACAGGTGGAAGGAAAATCCTTGTCTTCTACTTTCCACTGAAAG GCTGTTGCCCTTCCTCCTACAAAAAAAAAAACCGCCTTGCTCCAAAACATAATCTTGATGGCCCGCGGGTTATATCAAT TTTAAGTGGGAGTCCAGATTTTGCATTCATAAACCTTTCTCCTGCTGCAGAGGCAGAAAAAAATAACTGCTCCCTCCTC TTTGGCAATGTCTTTCCGCAGAAGGTATTCAAAAAACCTTTAACCCATAAAATCATTTCGACTGTCATTGAAGGATTTT AAAAACCAATTTTAAAAAAAAAGTTATTTTTCTTTTGTCTAAGCCTAAAAAAAAAAAGAAAAAAA

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

stage 6

Area Pellucida
Hensen's Node
Neural Plate/Tube
Primitive Streak

7-12

stage 8

Hensen's Node
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
Somites

13-18

stage 13

stage 14

stage 17

Mesoderm
Neural Plate/Tube
Somatic Mesoderm

19-24

stage 19

stage 20

stage 21

Head Mesenchyme
Pharyngeal Arches and Clefts
Somatic Mesoderm

stage 25

Head Mesenchyme
Pharyngeal Arches and Clefts
Somatic Mesoderm

Entry 2

GEISHA Id	BMAL1.Goncalves.2012	Data Source	Publication
Complete cDNA Template Probe	show GATGACCAACATGGAAGACTGGACTACGCAGACCAACAAGGGAGAATAAAAAATGCAAGGGAGGCTCATAGTCAAATTG AAAAACGGCGTCGAGATAAAATGAACAGCTTTATAGATGAACTGGCATCCTTGGTACCAACGTGCAACGCTATGTCTCG AAAGCTAGATAAACTCACTGTATTGAGAATGGCAGTCCAGCATATGAAAACATTACGTGGTGCTACAAACCCATATACA GAAGCCAACTATAAGCCTGCTTTTCTGTCAGATGACGAATTAAAGCATCTAATACTCAGGGCAGCAGATGGATTTCTTT TTGTTGTGGGCTGTGACAGAGGGAAGATACTGTTTGTTTCAGAATCTGTCTTCAAGATCCTCAACTACAGTCAGAATGA TTTAATCGGTCAAAGTTTATTTGACTACCTTCATCCGAAAGACATTGCCAAAGTGAAGGAGCAGCTATCTTCTTCTGAC ACTGCACCACGAGAAAGGCTTATAGATGCAAAAACTGGACTCCCAGTTAAAACTGATATAACACCCGGGCCATCACGAC TATGTTCTGGAGCAAGGCGGTCCTTCTTTTGTAGGATGAAGTGCAACAGACCTTCAGTGAAAGTAGAAGACAAGGATTT TCCTTCCACCTGTTCAAAGAAGAAAGCAGACCGCAAAAGCTTCTGCACTATCCACAGTACGGGATATTTAAAAAGCTGG CCACCAACAAAAATGGGACTAGATGAAGATAACGAGCCAGATAACGAGGGTTGTAATTTAAGCTGCCTTGTTGCAATTG GTCGGCTGCATCCTCATGTAGTACCACAGCCAGTCAACGGTGAGATCAGGGTGAAACCTACAGAGTACGTTTCTCGACA TGCAATAGATGGGAAGTTTGTTTTTGTAGACCAGAGGGC
Citation	Gonçalves L, Vinhas M, Pereira R, Pais De Azevedo T, Bajanca F, Palmeirim I. Circadian clock genes Bmal1 and Clock during early chick development. Dev Dyn. 2012 Aug;241(8):1365-73. doi: 10.1002/dvdy.23821.
Copyright	Copyright © 2012 Wiley Periodicals, Inc.
Comments	The complete cDNA sequence template used to generate the probe was obtained by PCR as described in the Goncalves et al. 2012.