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BARX1 BARX homeobox 1Gene | Official Symbol | BARX1 | Official Full Name | BARX homeobox 1 | CGNC ID | 3820 | also known as | BARX1B, homeobox protein BarH-like 1|BarH-like homeobox 1|bar class homeoprotein Barx1b|homeobox protein BarH-like 1b|homeodomain-containing transcription factor BarX-1 | gene type | protein-coding |
| Genomic Map | | Sequence Information | | Gene Expression | | Orthology | | Gene Ontology | | Links to other databases | |
Entry 1GEISHA Id | BARX1.Shigetani.2000 | Data Source | Publication | Complete cDNA Template Probe | show TAGGGCCCGGCGGCCGGGCTCGGCTCGGCACGGCCCGGGCGGCGGCGGCGAGGATGCAGCACCCGCTGGAGCTGGGGGC CGCGCACTACTTCCCGGCCGAAGCCTTTCCCGACCACCGCTCGCACCGCTACCGCAGTTTCATGATTGAGGAGATCCTC ACCGACCCCCCCGACGCCAAAGGCACGGCGCCGCCCGGGGAGCTGCTCAAGTTCGGGGTGCAGGCGCTGCTGTCGGCCC GGCCCTACCACAGCCACCTCGCCGTTCTGAAGGCGGAGCCGGCGGCCGTCTTCAAGTTCCCGCTGGCTCCCCTGGGCTG CTCGGGGCTGGGCTCGGCGCTGCTGGCCGCCGGCTCGGGGCTGCAGGGCGGCTCCGCCTCGCCCCACCTCCCGCTGGAG CTGCACCTCCGCGGCAAGCTGGAGCCGGGCGGCCCCGAGACGGGCAGCAAGGCCAAGAAGGGCCGCCGCAGCCGCACCG TCTTCACGGAGCTGCAGCTCATGGGGCTGGAGAAGCGCTTCGAGAAGCAGAAGTACCTCTCGACGCCCGACAGAATAGA CCTGGCCGAATCGCTGGGGCTCAGCCAGCTCCAGGTGAAAACCTGGTACCAGAACAGGCGCATGAAATGGAAGAAAATA GTGCTGCAGGGGGGCGGCCTGGAGTCCCCCACCAAGCCCAAGGGCCGCCCCAAGAAGAACTCCATCCCCAGCAGCGAGC AGCTCTCGGAGCAGGAGCGCGCCCGGGACGCCGAGAAACCCCCCGAGAGCCTGGGCTCGCCGGCTGAGGTCAGCCAGGA GGAGTGAGGGCACGGCCCGGCCCCACCGCTGCCGCCCGGGAGCGCGGGGACCCCCAGCGCCGCGCCGGGCCCCGGAGCG CGTTGCCCCGGGCGGGAGGAACCCCGCGCGCAGCGGCCCGGGCGGTAGAGGACGGGGGCGGAGGGCGGTGGGGCCGCGG TCGGAGCACTCGGCGCACAGCTCGGCCCCCGGCCCTGAGACCCGCGGTGCGCGGCGGCCGGGGGGCACCGGGTCCGCCC TCGGCATTGCTCGCTGCGTGAAACCCTGTGGTGCCCCCAGTTACTCGAAAAACTGCATTTTACGATCGGTTTTATTAAT GCGAAGATATTTACTTTATTTCAATAAAGTATTTTATGGACTATTAAAAAAAAAAAAAAAAAAA | Citation | Shigetani Y, Nobusada Y, Kuratani S. (2000). Ectodermally derived FGF8 defines the maxillomandibular region in the early chick embryo: epithelial-mesenchymal interactions in the specification of the craniofacial ectomesenchyme. Dev Biol. 2000 Dec 1;228(1):73-85. | Copyright | Reprinted with permission from Elsevier. Copyright © 2000 Academic Press. All rights reserved. | Comments | Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204193). |
Entry 2GEISHA Id | Barx1.Haworth.2007 | Data Source | Publication | Complete cDNA Template Probe | show TAGGGCCCGGCGGCCGGGCTCGGCTCGGCACGGCCCGGGCGGCGGCGGCGAGGATGCAGCACCCGCTGGAGCTGGGGGC CGCGCACTACTTCCCGGCCGAAGCCTTTCCCGACCACCGCTCGCACCGCTACCGCAGTTTCATGATTGAGGAGATCCTC ACCGACCCCCCCGACGCCAAAGGCACGGCGCCGCCCGGGGAGCTGCTCAAGTTCGGGGTGCAGGCGCTGCTGTCGGCCC GGCCCTACCACAGCCACCTCGCCGTTCTGAAGGCGGAGCCGGCGGCCGTCTTCAAGTTCCCGCTGGCTCCCCTGGGCTG CTCGGGGCTGGGCTCGGCGCTGCTGGCCGCCGGCTCGGGGCTGCAGGGCGGCTCCGCCTCGCCCCACCTCCCGCTGGAG CTGCACCTCCGCGGCAAGCTGGAGCCGGGCGGCCCCGAGACGGGCAGCAAGGCCAAGAAGGGCCGCCGCAGCCGCACCG TCTTCACGGAGCTGCAGCTCATGGGGCTGGAGAAGCGCTTCGAGAAGCAGAAGTACCTCTCGACGCCCGACAGAATAGA CCTGGCCGAATCGCTGGGGCTCAGCCAGCTCCAGGTGAAAACCTGGTACCAGAACAGGCGCATGAAATGGAAGAAAATA GTGCTGCAGGGGGGCGGCCTGGAGTCCCCCACCAAGCCCAAGGGCCGCCCCAAGAAGAACTCCATCCCCAGCAGCGAGC AGCTCTCGGAGCAGGAGCGCGCCCGGGACGCCGAGAAACCCCCCGAGAGCCTGGGCTCGCCGGCTGAGGTCAGCCAGGA GGAGTGAGGGCACGGCCCGGCCCCACCGCTGCCGCCCGGGAGCGCGGGGACCCCCAGCGCCGCGCCGGGCCCCGGAGCG CGTTGCCCCGGGCGGGAGGAACCCCGCGCGCAGCGGCCCGGGCGGTAGAGGACGGGGGCGGAGGGCGGTGGGGCCGCGG TCGGAGCACTCGGCGCACAGCTCGGCCCCCGGCCCTGAGACCCGCGGTGCGCGGCGGCCGGGGGGCACCGGGTCCGCCC TCGGCATTGCTCGCTGCGTGAAACCCTGTGGTGCCCCCAGTTACTCGAAAAACTGCATTTTACGATCGGTTTTATTAAT GCGAAGATATTTACTTTATTTCAATAAAGTATTTTATGGACTATTAAAAAAAAAAAAAAAAAAA | Citation | Haworth KE, Wilson JM, Grevellec A, Cobourne MT, Healy C, Helms JA, Sharpe PT, Tucker AS. Sonic hedgehog in the pharyngeal endoderm controls arch pattern via regulation of Fgf8 in head ectoderm. Dev Biol. 2007 Mar 1;303(1):244-58. | Copyright | Reprinted with permission from Elsevier.
Copyright © 2007 Elsevier B.V. All rights reserved. | Comments | As information provided is insufficient to verify exact sequence used to synthesize the probe, the sequence below was obtained from NCBI (Acc# NM_204193.1). |
Entry 3GEISHA Id | BARX1.Smith.2000 | Data Source | Publication | Complete cDNA Template Probe | show TAGGGCCCGGCGGCCGGGCTCGGCTCGGCACGGCCCGGGCGGCGGCGGCGAGGATGCAGCACCCGCTGGAGCTGGGGGC CGCGCACTACTTCCCGGCCGAAGCCTTTCCCGACCACCGCTCGCACCGCTACCGCAGTTTCATGATTGAGGAGATCCTC ACCGACCCCCCCGACGCCAAAGGCACGGCGCCGCCCGGGGAGCTGCTCAAGTTCGGGGTGCAGGCGCTGCTGTCGGCCC GGCCCTACCACAGCCACCTCGCCGTTCTGAAGGCGGAGCCGGCGGCCGTCTTCAAGTTCCCGCTGGCTCCCCTGGGCTG CTCGGGGCTGGGCTCGGCGCTGCTGGCCGCCGGCTCGGGGCTGCAGGGCGGCTCCGCCTCGCCCCACCTCCCGCTGGAG CTGCACCTCCGCGGCAAGCTGGAGCCGGGCGGCCCCGAGACGGGCAGCAAGGCCAAGAAGGGCCGCCGCAGCCGCACCG TCTTCACGGAGCTGCAGCTCATGGGGCTGGAGAAGCGCTTCGAGAAGCAGAAGTACCTCTCGACGCCCGACAGAATAGA CCTGGCCGAATCGCTGGGGCTCAGCCAGCTCCAGGTGAAAACCTGGTACCAGAACAGGCGCATGAAATGGAAGAAAATA GTGCTGCAGGGGGGCGGCCTGGAGTCCCCCACCAAGCCCAAGGGCCGCCCCAAGAAGAACTCCATCCCCAGCAGCGAGC AGCTCTCGGAGCAGGAGCGCGCCCGGGACGCCGAGAAACCCCCCGAGAGCCTGGGCTCGCCGGCTGAGGTCAGCCAGGA GGAGTGAGGGCACGGCCCGGCCCCACCGCTGCCGCCCGGGAGCGCGGGGACCCCCAGCGCCGCGCCGGGCCCCGGAGCG CGTTGCCCCGGGCGGGAGGAACCCCGCGCGCAGCGGCCCGGGCGGTAGAGGACGGGGGCGGAGGGCGGTGGGGCCGCGG TCGGAGCACTCGGCGCACAGCTCGGCCCCCGGCCCTGAGACCCGCGGTGCGCGGCGGCCGGGGGGCACCGGGTCCGCCC TCGGCATTGCTCGCTGCGTGAAACCCTGTGGTGCCCCCAGTTACTCGAAAAACTGCATTTTACGATCGGTTTTATTAAT GCGAAGATATTTACTTTATTTCAATAAAGTATTTTATGGACTATTAAAAAAAAAAAAAAAAAAA | Citation | Smith DM, Grasty RC, Theodosiou NA, Tabin CJ, Nascone-Yoder NM. Evolutionary relationships between the amphibian, avian, and mammalian stomachs. Evol Dev. 2000 Nov-Dec;2(6):348-59. | Copyright | Copyright © 2000-2011 by John Wiley & Sons, Inc., or related companies. All rights reserved. | Comments | As insuffienct information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #
As insufficient information is provided in the publication to verify the exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc. # NM_204193) |
Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | 19-24 | | stage 24 | | stage 24 | | Gizzard Gut Stomach
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Entry 4GEISHA Id | BARX1.Marcucio.2005 | Data Source | Publication | Complete cDNA Template Probe | show TAGGGCCCGGCGGCCGGGCTCGGCTCGGCACGGCCCGGGCGGCGGCGGCGAGGATGCAGCACCCGCTGGAGCTGGGGGC CGCGCACTACTTCCCGGCCGAAGCCTTTCCCGACCACCGCTCGCACCGCTACCGCAGTTTCATGATTGAGGAGATCCTC ACCGACCCCCCCGACGCCAAAGGCACGGCGCCGCCCGGGGAGCTGCTCAAGTTCGGGGTGCAGGCGCTGCTGTCGGCCC GGCCCTACCACAGCCACCTCGCCGTTCTGAAGGCGGAGCCGGCGGCCGTCTTCAAGTTCCCGCTGGCTCCCCTGGGCTG CTCGGGGCTGGGCTCGGCGCTGCTGGCCGCCGGCTCGGGGCTGCAGGGCGGCTCCGCCTCGCCCCACCTCCCGCTGGAG CTGCACCTCCGCGGCAAGCTGGAGCCGGGCGGCCCCGAGACGGGCAGCAAGGCCAAGAAGGGCCGCCGCAGCCGCACCG TCTTCACGGAGCTGCAGCTCATGGGGCTGGAGAAGCGCTTCGAGAAGCAGAAGTACCTCTCGACGCCCGACAGAATAGA CCTGGCCGAATCGCTGGGGCTCAGCCAGCTCCAGGTGAAAACCTGGTACCAGAACAGGCGCATGAAATGGAAGAAAATA GTGCTGCAGGGGGGCGGCCTGGAGTCCCCCACCAAGCCCAAGGGCCGCCCCAAGAAGAACTCCATCCCCAGCAGCGAGC AGCTCTCGGAGCAGGAGCGCGCCCGGGACGCCGAGAAACCCCCCGAGAGCCTGGGCTCGCCGGCTGAGGTCAGCCAGGA GGAGTGAGGGCACGGCCCGGCCCCACCGCTGCCGCCCGGGAGCGCGGGGACCCCCAGCGCCGCGCCGGGCCCCGGAGCG CGTTGCCCCGGGCGGGAGGAACCCCGCGCGCAGCGGCCCGGGCGGTAGAGGACGGGGGCGGAGGGCGGTGGGGCCGCGG TCGGAGCACTCGGCGCACAGCTCGGCCCCCGGCCCTGAGACCCGCGGTGCGCGGCGGCCGGGGGGCACCGGGTCCGCCC TCGGCATTGCTCGCTGCGTGAAACCCTGTGGTGCCCCCAGTTACTCGAAAAACTGCATTTTACGATCGGTTTTATTAAT GCGAAGATATTTACTTTATTTCAATAAAGTATTTTATGGACTATTAAAAAAAAAAAAAAAAAAA | Citation | Marcucio RS, Cordero DR, Hu D, Helms JA. Molecular interactions coordinating the development of the forebrain and face. Dev Biol. 2005 Aug 1;284(1):48-61. | Copyright | Copyright © 2005 Elsevier Inc. All rights reserved. | Comments | Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_204821.1). |
Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | 19-20 | | stage 20 | | Nasal Placode/Nerve
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Entry 5Entry 6GEISHA Id | BARX1.Anderson.2020 | Data Source | Direct Submission | Complete cDNA Template Probe | show CCTCACCGACCCCCCCGACGCCAAAGGCACGGCGCCGCCCGGGGAGCTGCTCAAGTTCGGGGTGCAGGCGCTGCTGTCG GCCCGGCCCTACCACAGCCACCTCGCCGTTCTGAAGGCGGAGCCGGCGGCCGTCTTCAAGTTCCCGCTGGCTCCCCTGG GCTGCTCGGGGCTGGGCTCGGCGCTGCTGGCCGCCGGCTCGGGGCTGCAGGGCGGCTCCGCCTCGCCCCACCTCCCGCT GGAGCTGCACCTCCGCGGCAAGCTGGAGCCGGGCGGCCCCGAGACGGGCAGCAAGGCCAAGAAGGGCCGCCGCAGCCGC ACCGTCTTCACGGAGCTGCAGCTCATGGGGCTGGAGAAGCGCTTCGAGAAGCAGAAGTACCTCTCGACGCCCGACAGAA TAGACCTGGCCGAATCGCTGGGGCTCAGCCAGCTCCAGGTGAAAACCTGGTACCAGAACAGGCGCATGAACATGGAAGA AAATAGTGCTGCAGGGGGGCGGCCTGGAGTCCCCCCACCAAGCCCAAGGGCCGCCCCAAGAAGAACTCCATCCCCAGCA GCGAGCAGCTCTCGGAGCAGGAGCGCGCACGTGACGCCGAGAAACCCCCCGAGAGCCTGGGCTCGCCGGCTGAGGTCAG CCAGGAGGAGTTGAGGGCCACGGCCCGGGCCCACCGCTGCCGCCCGGGAGCGCGGGGACCCCAGCGCCGCGCCGGGCCC CCGAAGCGCGTTGCCCGGGCGGGAGGAACCCGCGCGCAGGCGGCCCGGCGGTAGACGGACAGGGGCGGAGGCCGCTGGC CCCGCGGTCCGAGCCATCGGGCGCACAGTCGGCCCCGGCCTGAAGAACCGGGTTCTCCGCGGCCGGGGCGCCCCGGTCG CCCTCGGATTGTCCCTCGTGAC | Comments | Images provided by Claire Anderson. The probe was synthesized from cDNA clone ChEST322m23. Above probe sequence was obtained from NCBI-GenBank: BU236354.1. |
Entry 7GEISHA Id | Barx1.Singh.2016 | Data Source | Publication | Complete cDNA Template Probe | show ACCTCTCGACGCCCGACAGAATAGACCTGGCCGAATCGCTGGGGCTCAGCCAGCTCCAGGTGAAAACCTGGTACCAGAA CAGGCGCATGAAATGGAAGAAAATAGTGCTGCAGGGGGGCGGCCTGGAGTCCCCCACCAAGCCCAAGGGCCGCCCCAAG AAGAACTCCATCCCCAGCAGCGAGCAGCTCTCGGAGCAGGAGCGCGCCCGGGACGCCGAGAAACCCCCCGAGAGCCTGG GCTCGCCGGCTGAGGTCAGCCAGGAGGAGTGAGGGCACGGCCCGGCCCCACCGCTGCCGCCCGGGAGCGCGGGGACCCC CAGCGCCGCGCCGGGCCCCGGAGCGCGTTGCCCCGGGCGGGAGGAACCCCGCGCGCAGCGGCCCGGGCGGTAGAGGACG GGGGCGGAGGGCGGTGGGGCCGCGGTCGGAGCACTCGGCGCACAGCTCGGCCCCCGGCCCTGAGACCCGCGGTGCGCGG CGGCCGGGGGGCACCGGGTCCGCCCTCGGCATTGCTCGCTGCGTGAAACCCTGTGGTGCCCCCAGTTACTCGAAAAACT GCATTTTACGATCGGTTTTATTAATGCGAAGATATTTACTTTATTTCAATAAAGTATTTTATGGACTATTAAAAA | Citation | Singh PN, Ray A, Azad K, Bandyopadhyay A. A comprehensive mRNA expression analysis of developing chicken articular cartilage. Gene Expr Patterns. 2016 Jan;20(1):22-31. | Copyright | Copyright © 2015 Elsevier B.V. All rights reserved. | Comments | The complete cDNA template sequence was obtained from the information in the publication as described in Singh et al. 2016. The probe was synthesized from cDNA clone ChEST52p17. |
Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | 25-30 | | stage 28 | | Limb Buds
| 31-38 | | stage 31 | | stage 34 | | stage 36 | | stage 38 | | Limb Buds
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| Data from NCBI Unigene EST Profile Unigene ID: Gga.44 |
MouseFrogFruit FlyZebra FinchZebrafish
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