GEISHA - A Chicken Embryo Gene Expression Database
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BARX1
BARX homeobox 1

Gene
Official SymbolBARX1
Official Full NameBARX homeobox 1
CGNC ID3820
also known asBARX1B, homeobox protein BarH-like 1|BarH-like homeobox 1|bar class homeoprotein Barx1b|homeobox protein BarH-like 1b|homeodomain-containing transcription factor BarX-1
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204193
PolypeptideNP_989524
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.44
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human56033ENSG00000131668MIM:603260
Mouse12022ENSMUSG00000021381All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(2) MGI:103124
Xenopus100491751919915
Zebrafish553644ENSDARG00000007407ZDB-GENE-050522-28ZFIN:ZDB-GENE-050522-28
Gene Ontology
Molecular Functionsequence-specific DNA binding transcription factor activity, more...transcription regulatory region sequence-specific DNA binding
Biological Processtranscription, DNA-templated
Cellular Componentnucleus
Links to other databases
Entrez Gene374017
Ensembl Gene
KEGGgga:374017

Entry 1

GEISHA IdBARX1.Shigetani.2000Data SourcePublication
Complete cDNA Template Probeshow
TAGGGCCCGGCGGCCGGGCTCGGCTCGGCACGGCCCGGGCGGCGGCGGCGAGGATGCAGCACCCGCTGGAGCTGGGGGC
CGCGCACTACTTCCCGGCCGAAGCCTTTCCCGACCACCGCTCGCACCGCTACCGCAGTTTCATGATTGAGGAGATCCTC
ACCGACCCCCCCGACGCCAAAGGCACGGCGCCGCCCGGGGAGCTGCTCAAGTTCGGGGTGCAGGCGCTGCTGTCGGCCC
GGCCCTACCACAGCCACCTCGCCGTTCTGAAGGCGGAGCCGGCGGCCGTCTTCAAGTTCCCGCTGGCTCCCCTGGGCTG
CTCGGGGCTGGGCTCGGCGCTGCTGGCCGCCGGCTCGGGGCTGCAGGGCGGCTCCGCCTCGCCCCACCTCCCGCTGGAG
CTGCACCTCCGCGGCAAGCTGGAGCCGGGCGGCCCCGAGACGGGCAGCAAGGCCAAGAAGGGCCGCCGCAGCCGCACCG
TCTTCACGGAGCTGCAGCTCATGGGGCTGGAGAAGCGCTTCGAGAAGCAGAAGTACCTCTCGACGCCCGACAGAATAGA
CCTGGCCGAATCGCTGGGGCTCAGCCAGCTCCAGGTGAAAACCTGGTACCAGAACAGGCGCATGAAATGGAAGAAAATA
GTGCTGCAGGGGGGCGGCCTGGAGTCCCCCACCAAGCCCAAGGGCCGCCCCAAGAAGAACTCCATCCCCAGCAGCGAGC
AGCTCTCGGAGCAGGAGCGCGCCCGGGACGCCGAGAAACCCCCCGAGAGCCTGGGCTCGCCGGCTGAGGTCAGCCAGGA
GGAGTGAGGGCACGGCCCGGCCCCACCGCTGCCGCCCGGGAGCGCGGGGACCCCCAGCGCCGCGCCGGGCCCCGGAGCG
CGTTGCCCCGGGCGGGAGGAACCCCGCGCGCAGCGGCCCGGGCGGTAGAGGACGGGGGCGGAGGGCGGTGGGGCCGCGG
TCGGAGCACTCGGCGCACAGCTCGGCCCCCGGCCCTGAGACCCGCGGTGCGCGGCGGCCGGGGGGCACCGGGTCCGCCC
TCGGCATTGCTCGCTGCGTGAAACCCTGTGGTGCCCCCAGTTACTCGAAAAACTGCATTTTACGATCGGTTTTATTAAT
GCGAAGATATTTACTTTATTTCAATAAAGTATTTTATGGACTATTAAAAAAAAAAAAAAAAAAA
CitationShigetani Y, Nobusada Y, Kuratani S. (2000). Ectodermally derived FGF8 defines the maxillomandibular region in the early chick embryo: epithelial-mesenchymal interactions in the specification of the craniofacial ectomesenchyme. Dev Biol. 2000 Dec 1;228(1):73-85.
CopyrightReprinted with permission from Elsevier. Copyright © 2000 Academic Press. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204193).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 17
stage 18
Mesoderm
Pharyngeal Arches and Clefts
 
19-24
stage 20
stage 23
stage 24
Mesoderm
Pharyngeal Arches and Clefts
Double Label
Figure 3 compares expression patterns of mesenchymally expressed homeobox genes (Msx1, Fgf8, Dlx1, and Barx1) in chick embryo at HH stages 13, 15, 17, 19, 20, 23 and 24.

Entry 2

GEISHA IdBarx1.Haworth.2007Data SourcePublication
Complete cDNA Template Probeshow
TAGGGCCCGGCGGCCGGGCTCGGCTCGGCACGGCCCGGGCGGCGGCGGCGAGGATGCAGCACCCGCTGGAGCTGGGGGC
CGCGCACTACTTCCCGGCCGAAGCCTTTCCCGACCACCGCTCGCACCGCTACCGCAGTTTCATGATTGAGGAGATCCTC
ACCGACCCCCCCGACGCCAAAGGCACGGCGCCGCCCGGGGAGCTGCTCAAGTTCGGGGTGCAGGCGCTGCTGTCGGCCC
GGCCCTACCACAGCCACCTCGCCGTTCTGAAGGCGGAGCCGGCGGCCGTCTTCAAGTTCCCGCTGGCTCCCCTGGGCTG
CTCGGGGCTGGGCTCGGCGCTGCTGGCCGCCGGCTCGGGGCTGCAGGGCGGCTCCGCCTCGCCCCACCTCCCGCTGGAG
CTGCACCTCCGCGGCAAGCTGGAGCCGGGCGGCCCCGAGACGGGCAGCAAGGCCAAGAAGGGCCGCCGCAGCCGCACCG
TCTTCACGGAGCTGCAGCTCATGGGGCTGGAGAAGCGCTTCGAGAAGCAGAAGTACCTCTCGACGCCCGACAGAATAGA
CCTGGCCGAATCGCTGGGGCTCAGCCAGCTCCAGGTGAAAACCTGGTACCAGAACAGGCGCATGAAATGGAAGAAAATA
GTGCTGCAGGGGGGCGGCCTGGAGTCCCCCACCAAGCCCAAGGGCCGCCCCAAGAAGAACTCCATCCCCAGCAGCGAGC
AGCTCTCGGAGCAGGAGCGCGCCCGGGACGCCGAGAAACCCCCCGAGAGCCTGGGCTCGCCGGCTGAGGTCAGCCAGGA
GGAGTGAGGGCACGGCCCGGCCCCACCGCTGCCGCCCGGGAGCGCGGGGACCCCCAGCGCCGCGCCGGGCCCCGGAGCG
CGTTGCCCCGGGCGGGAGGAACCCCGCGCGCAGCGGCCCGGGCGGTAGAGGACGGGGGCGGAGGGCGGTGGGGCCGCGG
TCGGAGCACTCGGCGCACAGCTCGGCCCCCGGCCCTGAGACCCGCGGTGCGCGGCGGCCGGGGGGCACCGGGTCCGCCC
TCGGCATTGCTCGCTGCGTGAAACCCTGTGGTGCCCCCAGTTACTCGAAAAACTGCATTTTACGATCGGTTTTATTAAT
GCGAAGATATTTACTTTATTTCAATAAAGTATTTTATGGACTATTAAAAAAAAAAAAAAAAAAA
CitationHaworth KE, Wilson JM, Grevellec A, Cobourne MT, Healy C, Helms JA, Sharpe PT, Tucker AS. Sonic hedgehog in the pharyngeal endoderm controls arch pattern via regulation of Fgf8 in head ectoderm. Dev Biol. 2007 Mar 1;303(1):244-58.
CopyrightReprinted with permission from Elsevier. Copyright © 2007 Elsevier B.V. All rights reserved.
CommentsAs information provided is insufficient to verify exact sequence used to synthesize the probe, the sequence below was obtained from NCBI (Acc# NM_204193.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19
stage 19
Pharyngeal Arches and Clefts
 

Entry 3

GEISHA IdBARX1.Smith.2000Data SourcePublication
Complete cDNA Template Probeshow
TAGGGCCCGGCGGCCGGGCTCGGCTCGGCACGGCCCGGGCGGCGGCGGCGAGGATGCAGCACCCGCTGGAGCTGGGGGC
CGCGCACTACTTCCCGGCCGAAGCCTTTCCCGACCACCGCTCGCACCGCTACCGCAGTTTCATGATTGAGGAGATCCTC
ACCGACCCCCCCGACGCCAAAGGCACGGCGCCGCCCGGGGAGCTGCTCAAGTTCGGGGTGCAGGCGCTGCTGTCGGCCC
GGCCCTACCACAGCCACCTCGCCGTTCTGAAGGCGGAGCCGGCGGCCGTCTTCAAGTTCCCGCTGGCTCCCCTGGGCTG
CTCGGGGCTGGGCTCGGCGCTGCTGGCCGCCGGCTCGGGGCTGCAGGGCGGCTCCGCCTCGCCCCACCTCCCGCTGGAG
CTGCACCTCCGCGGCAAGCTGGAGCCGGGCGGCCCCGAGACGGGCAGCAAGGCCAAGAAGGGCCGCCGCAGCCGCACCG
TCTTCACGGAGCTGCAGCTCATGGGGCTGGAGAAGCGCTTCGAGAAGCAGAAGTACCTCTCGACGCCCGACAGAATAGA
CCTGGCCGAATCGCTGGGGCTCAGCCAGCTCCAGGTGAAAACCTGGTACCAGAACAGGCGCATGAAATGGAAGAAAATA
GTGCTGCAGGGGGGCGGCCTGGAGTCCCCCACCAAGCCCAAGGGCCGCCCCAAGAAGAACTCCATCCCCAGCAGCGAGC
AGCTCTCGGAGCAGGAGCGCGCCCGGGACGCCGAGAAACCCCCCGAGAGCCTGGGCTCGCCGGCTGAGGTCAGCCAGGA
GGAGTGAGGGCACGGCCCGGCCCCACCGCTGCCGCCCGGGAGCGCGGGGACCCCCAGCGCCGCGCCGGGCCCCGGAGCG
CGTTGCCCCGGGCGGGAGGAACCCCGCGCGCAGCGGCCCGGGCGGTAGAGGACGGGGGCGGAGGGCGGTGGGGCCGCGG
TCGGAGCACTCGGCGCACAGCTCGGCCCCCGGCCCTGAGACCCGCGGTGCGCGGCGGCCGGGGGGCACCGGGTCCGCCC
TCGGCATTGCTCGCTGCGTGAAACCCTGTGGTGCCCCCAGTTACTCGAAAAACTGCATTTTACGATCGGTTTTATTAAT
GCGAAGATATTTACTTTATTTCAATAAAGTATTTTATGGACTATTAAAAAAAAAAAAAAAAAAA
CitationSmith DM, Grasty RC, Theodosiou NA, Tabin CJ, Nascone-Yoder NM. Evolutionary relationships between the amphibian, avian, and mammalian stomachs. Evol Dev. 2000 Nov-Dec;2(6):348-59.
CopyrightCopyright © 2000-2011 by John Wiley & Sons, Inc., or related companies. All rights reserved.
CommentsAs insuffienct information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # As insufficient information is provided in the publication to verify the exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc. # NM_204193)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 24
stage 24
Gizzard
Gut
Stomach
Includes Xenopus tadpoles, chickens and mouse embryos.

Entry 4

GEISHA IdBARX1.Marcucio.2005Data SourcePublication
Complete cDNA Template Probeshow
TAGGGCCCGGCGGCCGGGCTCGGCTCGGCACGGCCCGGGCGGCGGCGGCGAGGATGCAGCACCCGCTGGAGCTGGGGGC
CGCGCACTACTTCCCGGCCGAAGCCTTTCCCGACCACCGCTCGCACCGCTACCGCAGTTTCATGATTGAGGAGATCCTC
ACCGACCCCCCCGACGCCAAAGGCACGGCGCCGCCCGGGGAGCTGCTCAAGTTCGGGGTGCAGGCGCTGCTGTCGGCCC
GGCCCTACCACAGCCACCTCGCCGTTCTGAAGGCGGAGCCGGCGGCCGTCTTCAAGTTCCCGCTGGCTCCCCTGGGCTG
CTCGGGGCTGGGCTCGGCGCTGCTGGCCGCCGGCTCGGGGCTGCAGGGCGGCTCCGCCTCGCCCCACCTCCCGCTGGAG
CTGCACCTCCGCGGCAAGCTGGAGCCGGGCGGCCCCGAGACGGGCAGCAAGGCCAAGAAGGGCCGCCGCAGCCGCACCG
TCTTCACGGAGCTGCAGCTCATGGGGCTGGAGAAGCGCTTCGAGAAGCAGAAGTACCTCTCGACGCCCGACAGAATAGA
CCTGGCCGAATCGCTGGGGCTCAGCCAGCTCCAGGTGAAAACCTGGTACCAGAACAGGCGCATGAAATGGAAGAAAATA
GTGCTGCAGGGGGGCGGCCTGGAGTCCCCCACCAAGCCCAAGGGCCGCCCCAAGAAGAACTCCATCCCCAGCAGCGAGC
AGCTCTCGGAGCAGGAGCGCGCCCGGGACGCCGAGAAACCCCCCGAGAGCCTGGGCTCGCCGGCTGAGGTCAGCCAGGA
GGAGTGAGGGCACGGCCCGGCCCCACCGCTGCCGCCCGGGAGCGCGGGGACCCCCAGCGCCGCGCCGGGCCCCGGAGCG
CGTTGCCCCGGGCGGGAGGAACCCCGCGCGCAGCGGCCCGGGCGGTAGAGGACGGGGGCGGAGGGCGGTGGGGCCGCGG
TCGGAGCACTCGGCGCACAGCTCGGCCCCCGGCCCTGAGACCCGCGGTGCGCGGCGGCCGGGGGGCACCGGGTCCGCCC
TCGGCATTGCTCGCTGCGTGAAACCCTGTGGTGCCCCCAGTTACTCGAAAAACTGCATTTTACGATCGGTTTTATTAAT
GCGAAGATATTTACTTTATTTCAATAAAGTATTTTATGGACTATTAAAAAAAAAAAAAAAAAAA
CitationMarcucio RS, Cordero DR, Hu D, Helms JA. Molecular interactions coordinating the development of the forebrain and face. Dev Biol. 2005 Aug 1;284(1):48-61.
CopyrightCopyright © 2005 Elsevier Inc. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_204821.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-20
stage 20
Nasal Placode/Nerve
ectoderm
all
 
  

Entry 5

GEISHA IdBarx-1.Barlow.1999Data SourcePublication
Complete cDNA Template Probeshow
AAGCCCAAGGGCCGCCCCAAGAAGAACTCCATCCCCAGCAGCGAGCAGCTCTCGGAGCAGGAGCGCGCCAAGGAGACGG
AGAAACCCCCCGAGAGCCCTGGGGAGCCGAGCGAGAGGCAGCAGGAGGAGTGAGGGCACGGCCCGGCCCCACCGCTGCC
GCCCGGGAGGGGGGGGACCCCAAGCCCCGCGCCGGGCCCCGGAGCGAGTTGCCCCGGGCGGGAGGAACCCCGCGCGCAG
CGGCCCGGGCGGTAGAGGACGGGGGCGGAGGGCGGTGGGGCCGCGGTCGGAGCACTCGGCGCACAGTTCGGCCCCCGGC
CCTGAGACCCGAGGTGCGCGGCGGCCGGGGGGCACCGGGTCCGCCCTCGGCATTGCTCGGTGCGTGAAACCCTCTGGTG
CCCCCAGTTACTCGAAAAACTGCATTTTACGATCGGTTTTATTAATGCGAAGATATTTACTTTATTTCAATAAAGTATT
TTATGGACTTTTA
CitationBarlow AJ, Bogardi JP, Ladher R, Francis-West PH. Expression of chick Barx-1 and its differential regulation by FGF-8 and BMP signaling in the maxillary primordia. Dev Dyn. 1999 Apr;214(4):291-302.
CopyrightCopyright © 1999 Wiley‐Liss, Inc.
CommentsThe complete cDNA template sequence was obtained from the information in the publication as described in Barlow et al. 1999.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 16
Stomach
 
19-24
stage 20
stage 20
stage 22
stage 23
stage 24
stage 24
Nasal Placode/Nerve
Pharyngeal Arches and Clefts
Sclerotome
Stomach
Wing
md, mandibular primordia; mx, maxillary primordia
25-30
stage 26
stage 26
stage 26
stage 26
stage 27
stage 28
stage 28
stage 28
stage 30
Leg
Nasal Placode/Nerve
Pharyngeal Arches and Clefts
Sclerotome
Wing
md, mandibular primordia
md, mandibular primordia; mx, maxillary primordia
31-44
stage 38
stage 44
stage 44
stage 44
stage 44
stage 44
stage 44
stage 44
Leg
 

Entry 6

GEISHA IdBARX1.Anderson.2020Data SourceDirect Submission
Complete cDNA Template Probeshow
CCTCACCGACCCCCCCGACGCCAAAGGCACGGCGCCGCCCGGGGAGCTGCTCAAGTTCGGGGTGCAGGCGCTGCTGTCG
GCCCGGCCCTACCACAGCCACCTCGCCGTTCTGAAGGCGGAGCCGGCGGCCGTCTTCAAGTTCCCGCTGGCTCCCCTGG
GCTGCTCGGGGCTGGGCTCGGCGCTGCTGGCCGCCGGCTCGGGGCTGCAGGGCGGCTCCGCCTCGCCCCACCTCCCGCT
GGAGCTGCACCTCCGCGGCAAGCTGGAGCCGGGCGGCCCCGAGACGGGCAGCAAGGCCAAGAAGGGCCGCCGCAGCCGC
ACCGTCTTCACGGAGCTGCAGCTCATGGGGCTGGAGAAGCGCTTCGAGAAGCAGAAGTACCTCTCGACGCCCGACAGAA
TAGACCTGGCCGAATCGCTGGGGCTCAGCCAGCTCCAGGTGAAAACCTGGTACCAGAACAGGCGCATGAACATGGAAGA
AAATAGTGCTGCAGGGGGGCGGCCTGGAGTCCCCCCACCAAGCCCAAGGGCCGCCCCAAGAAGAACTCCATCCCCAGCA
GCGAGCAGCTCTCGGAGCAGGAGCGCGCACGTGACGCCGAGAAACCCCCCGAGAGCCTGGGCTCGCCGGCTGAGGTCAG
CCAGGAGGAGTTGAGGGCCACGGCCCGGGCCCACCGCTGCCGCCCGGGAGCGCGGGGACCCCAGCGCCGCGCCGGGCCC
CCGAAGCGCGTTGCCCGGGCGGGAGGAACCCGCGCGCAGGCGGCCCGGCGGTAGACGGACAGGGGCGGAGGCCGCTGGC
CCCGCGGTCCGAGCCATCGGGCGCACAGTCGGCCCCGGCCTGAAGAACCGGGTTCTCCGCGGCCGGGGCGCCCCGGTCG
CCCTCGGATTGTCCCTCGTGAC
CommentsImages provided by Claire Anderson. The probe was synthesized from cDNA clone ChEST322m23. Above probe sequence was obtained from NCBI-GenBank: BU236354.1.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
stage 12
stage 12
Somatic Mesoderm
Splanchnic Mesoderm
SECTION 47
SECTION 53
lateral plate mesoderm of foregut

Entry 7

GEISHA IdBarx1.Singh.2016Data SourcePublication
Complete cDNA Template Probeshow
ACCTCTCGACGCCCGACAGAATAGACCTGGCCGAATCGCTGGGGCTCAGCCAGCTCCAGGTGAAAACCTGGTACCAGAA
CAGGCGCATGAAATGGAAGAAAATAGTGCTGCAGGGGGGCGGCCTGGAGTCCCCCACCAAGCCCAAGGGCCGCCCCAAG
AAGAACTCCATCCCCAGCAGCGAGCAGCTCTCGGAGCAGGAGCGCGCCCGGGACGCCGAGAAACCCCCCGAGAGCCTGG
GCTCGCCGGCTGAGGTCAGCCAGGAGGAGTGAGGGCACGGCCCGGCCCCACCGCTGCCGCCCGGGAGCGCGGGGACCCC
CAGCGCCGCGCCGGGCCCCGGAGCGCGTTGCCCCGGGCGGGAGGAACCCCGCGCGCAGCGGCCCGGGCGGTAGAGGACG
GGGGCGGAGGGCGGTGGGGCCGCGGTCGGAGCACTCGGCGCACAGCTCGGCCCCCGGCCCTGAGACCCGCGGTGCGCGG
CGGCCGGGGGGCACCGGGTCCGCCCTCGGCATTGCTCGCTGCGTGAAACCCTGTGGTGCCCCCAGTTACTCGAAAAACT
GCATTTTACGATCGGTTTTATTAATGCGAAGATATTTACTTTATTTCAATAAAGTATTTTATGGACTATTAAAAA
CitationSingh PN, Ray A, Azad K, Bandyopadhyay A. A comprehensive mRNA expression analysis of developing chicken articular cartilage. Gene Expr Patterns. 2016 Jan;20(1):22-31.
CopyrightCopyright © 2015 Elsevier B.V. All rights reserved.
CommentsThe complete cDNA template sequence was obtained from the information in the publication as described in Singh et al. 2016. The probe was synthesized from cDNA clone ChEST52p17.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-30
stage 28
Limb Buds
 
31-38
stage 31
stage 34
stage 36
stage 38
Limb Buds
 
all
 
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.44

Mouse

EmageMGI:103124
EurexpressMGI:103124
MGI GXDMGI:103124

Frog

Xenbase919915

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-050522-28
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