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A chicken embryo gene expression database
 
GEISHA - A Chicken Embryo Gene Expression Database
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Gene Expression Report

Probe 1

GEISHA IdBrachyury.Hardy.2008
 NCBIEnsembl
Gene Name BRAC_CHICK
Gene Description Brachyury protein (T protein). [Source:Uniprot/SWISSPROT;Acc:P79777]
Gene Ontologyshow
GO:0001570 vasculogenesis IEA
GO:0001756 somitogenesis IEA
GO:0001839 neural plate morphogenesis IEA
GO:0001843 neural tube closure IEA
GO:0003677 DNA binding IEA
GO:0003700 transcription factor activity IEA
GO:0005634 nucleus IEA
GO:0005737 cytoplasm IEA
GO:0006350 transcription IEA
GO:0006355 regulation of transcription, DNA-dependent IEA
GO:0007275 multicellular organismal development IEA
GO:0008284 positive regulation of cell proliferation IEA
GO:0009653 anatomical structure morphogenesis IEA
GO:0009952 anterior/posterior pattern formation IEA
GO:0030903 notochord development IEA
Ensembl Genome Map
contig view
CitationHardy KM, Garriock RJ, Yatskievych TA, D'Agostino SL, Antin PB, Krieg PA. Non-canonical Wnt signaling through Wnt5a/b and a novel Wnt11 gene, Wnt11b, regulates cell migration during avian gastrulation. Dev Biol. 2008 Aug 15;320(2):391-401. Epub 2008 May 29.
Copyright"Reprinted from Developmental Biology, 320, Hardy, KM, Garriock, RJ, Yatskievych, TA, D'Agostino, SL, Antin, PB, Krieg, PA. Non-canonical Wnt signaling through Wnt5a/b and a novel Wnt11 gene, Wnt11b, regulates cell migration during avian gastrulation., Pages No., Copyright (2008), with permission from Elsevier". Copyright © 2008 Elsevier B.V. All rights reserved.
CommentsAuthors said: The Brachyury (Accession # NM_204940) template was prepared by linearizing with HindIII and transcribing with T3 polymerase.
Complete Sequenceshow
CGAGCTCGGGCGGAGGCAGCCGGGCCCCGCCGGCGGCGCTCGGGGAGGGGGGGGGGGCTTCGGGGGCGGCCATGGGCTC
CCCGGAGGACGCGGGCAAGGCGCCGGCGTACCGAGTGGACCACCTGCTGAGCGCGGTGGAGAGCGAGCTGCAGGCGGGC
AGCGAGAAGGGAGACCCGACGGAGCGCGAGCTGCGCGTGGCGCTGGAGGACGGCGAGCTGTGNCTGCGCTTCAAGGAGC
TCACCAACGAGATGATCGTCACCAAGAACGGCAGGAGGATGTTCCCGGTGCTGAAGGTGAGCGTGTCGGGGCTGGACCC
CAACGCCATGTACTCCTTCCTGCTGGACTTCGTGGCGGCCGACGGGCACCGCTGGAAGTACGTCAACGGCGAGTGGGTG
CCGGGCGGCAAGCCGGAGCCGCAGGCGCCCAGCTGCGTCTACATCCACCCCGACTCGCCCAACTTCGGCGCCCACTGGA
TGAAGGCGCCCGTCTCCTTCAGCAAGGTCAAGCTCACCAACAAGCTCAACGGCGGCGGGCAGATCATGCTCAACTCCCT
GCACAAGTACGAGCCCCGCATCCACATCGTGCGGGTGGGCGGCCCGCAGCGGATGATCACCAGCCATTCCTTCCCCGAG
ACCCAGTTCACTGCCGTGACGGCGTACCAGAACGAGGAGATCACAGCTTTGAAAATTAAATACAACCCATTTGCGAAGG
CATTTCTTGACGCAAAGGAAAGAAATGATCACAAAGACATGATGGAGGAAGCGGGAGACAACCAGCAGTCTGGATACTC
GCAGTTAGGTAGTTGGCTTATTCCCGGGGCTGGGGCTCTGTGCCCACCTGCCAATCCTCACTCTCAGTTTGGAGCACCC
CTGTCTCTCTCCCCTGCTCACAGCTGTGAAAGGTACTCACCGCTGAGGAATCACCGTTCTGCCCCCTACCCCAATCCCT
ACACCCATAGAAACAACTCACCAACAGCTTACACTGATAACTCCTCTGCCTGCCTTCCCATGCTCCAGTCCCATGACAA
TTGGTCCTCCCTGGGAGTTCCCACACACACGACTATGCTGCCCATGAGCCACAGCACTGGCACAGCTACCAGCTCCAGT
CAGTACCCGAACTTATGGTCCGTGAGTAACAGCACCATCACCCCGGCGCCTCAGTCAAGCGGGATGTCCAACGGCCTGA
GCTCCCAGTTCCTGCGTGGCTCTCCGGTGCACTACACCGCTCTCCCACATCCCGTCACTGCCACCACCTCCACATCCCC
ACTGTACGATGGAGGAGCACCTGCAGACCTTCCTGACAGCCAGTACGATGCCTCTGCACACACTCGGTTGGCATCCATG
TGGACGCCCATCACCCCACCTTCCATGTAAACTCAGACCTCTACTTTAGAACAGACTTTTTTAGCTACTGAATTACTTT
AAATGCTTAATCCTCAAGGAAGAGAAAAAGGAGACGTGAAGGAAATTATAGATAAAGCATCTGCACTGCTTTGAGTAGA
GCATCCAAGTTATGTCTCTGATAGTGAACAGACCATCATTAACTTCATGCAGAGTTTACAAATCTGGTGAGCGTGCAAT
TCTGAGAGCAGACTGACTGCTTTTCATCTTTTTTGTTTTCTAGCTTGATAGGTCTAATTTTTAAGATTTTGACTTAGAT
TCCAAATTTCTCAGTGTTCTGATATATTTGGACCTCAAGTTTGGCATCTGGACAACTTTCTTGAGTAAGTTACTCCTGA
TTGGTTTTCTTTTTTTTTTTTTTTAAATGGCAAACCTAGGAATAGCCATATTACACTGTTATTAACCACCTAGGTAGAA
GCATTCTGAATTCTGCACAAGTGTAGCTGAGGATGGAAGTTTTTGGAAGATCACGTGCACTAATGCGTATTTGTCTCAC
AGATACGGTTGTGTTCTTAACTGTATGCTTGTTTCCTTGCTGCTGAATTACTGTTGAGACAATCTGCAAGAACTGTTTT
ACTCCTAATAAATTACAGTATTATCATTGGTCTAAATTGTTTTACCCCAGAGATTCCTTTTCGAGGTAAGTTTTGCTGT
TGATCACATTCAGACCCCTGTCAGCTTTGCCAAACGTCTTTATTTCAAACAGCCGGTGTCTTAATGTGAAGTCCTCTCC
AAAACCATTTCAACTCATTGAAAAACATCACGGTCTTTTATGATCTCTTGCTCAGGCCGTAAAGGGAGGGAATTCAATA
CCTGGAGAATCATTCTAATATATATATTTTTTTTCAATGTAATACTCTGTTGAATTGTATTTATTGTTTCTTAAGCTTG
CATCTTCCGTTCGTCTGCCACATTAAGGTATGTAAATAATCTGTCAATCTGCAGTGTATTTCTTTAGACAATGACGTGT
AGGATTTGTCACCCAATGGCGCATTGAACAACATGGGTGTCAGAAGTTAAATTATTGTGAGGGGGAAAGCTATAGTCCC
CGATAGCTGAAGGAAAACTGCAGATATACTAAGCTTTAAAATACATTGCTTGACTTGCTGTGAAGGCCAGGTCTTGATG
ATACACTGATAATAAGTACGATGACTTAGATTTCTAACGCAGACTAACTCATTGGCTCAAAGGGTACCCTTGGGCTTGT
CTGTTTCTCCCGCTACCTGGCAAGTTCATATCCTGAGCAAAATGGTTTGTTTTACATAAGCCATAGTGGATAACTTTTA
AAACGAAGTGCCTAATGTACTGAAGCAAAAATTCTAAATCAGGGAATTCCTTAAATAACTCTTCATTGTGTGCGCATGA
GTATGGTGGCAGCTTTAAGAGAAGAAGCAAATATTTGCACCATGTCAGTCTCGTTGTAACCTTATGGGCAGGTCCTGAC
CCCGAAGATTGTGTCAGGGTTTTTACCGCAGAATGATTTTGTGTGCAACTGCGGGATGCGGTCTCCGAGGTGCTCCATC
AAGAGATTGCACCAGCGGCAGATAGCTGTGCAACCCTGTTCTGTGTCAATAGTGTAAATATTGTTCTAAGCTCTCCTAT
TTTATTGTGAAAGGAAATTGTGTAAATGATGTAAGTGCATTATTATTTAGAATATTTTGTAGAAGATAGTGTTATTTCA
TTGTATTTTTTTTTTACTTGTACTTGGGAAGTATAATTTAAATTGG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-8
stage 8

Early Mesoderm

Epiblast

Notochord

Primitive Streak

 

Probe 2

GEISHA IdBrachyury
 NCBIEnsembl
Gene NameTBRAC_CHICK
AliasesCH-T, T, brachyury homolog|brachyury (T), T, T, brachyury homolog (mouse), Official 
Gene DescriptionT, brachyury homolog (mouse)Brachyury protein (T protein). [Source:Uniprot/SWISSPROT;Acc:P79777]
Gene Ontologyshow
GO:0001570 vasculogenesis IEA
GO:0001756 somitogenesis IEA
GO:0001839 neural plate morphogenesis IEA
GO:0001843 neural tube closure IEA
GO:0003700 transcription factor activity IEA
GO:0005515 protein binding IEA
GO:0005634 nucleus IEA
GO:0005737 cytoplasm IEA
GO:0006355 regulation of transcription, DNA-dependent IEA
GO:0007275 multicellular organismal development IEA
GO:0008284 positive regulation of cell proliferation IEA
GO:0009653 anatomical structure morphogenesis IEA
GO:0030903 notochord development IEA
GO:0043565 sequence-specific DNA binding IEA
GO:0045944 positive regulation of transcription from RNA polymerase II promoter IEA
show
GO:0001570 vasculogenesis IEA
GO:0001756 somitogenesis IEA
GO:0001839 neural plate morphogenesis IEA
GO:0001843 neural tube closure IEA
GO:0003677 DNA binding IEA
GO:0003700 transcription factor activity IEA
GO:0005634 nucleus IEA
GO:0005737 cytoplasm IEA
GO:0006350 transcription IEA
GO:0006355 regulation of transcription, DNA-dependent IEA
GO:0007275 multicellular organismal development IEA
GO:0008284 positive regulation of cell proliferation IEA
GO:0009653 anatomical structure morphogenesis IEA
GO:0009952 anterior/posterior pattern formation IEA
GO:0030903 notochord development IEA
NCBI Nucleotide HitNM_204940 show details
scoreevaluealignment lengthdescription
31240.03127Gallus gallus T, brachyury homolog (mouse) (T), mRNA
Ensembl Genome Map
contig view
Complete Sequenceshow
CGAGCTCGGGCGGAGGCAGCCGGGCCCCGCCGGCGGCGCTCGGGGAGGGGGGGGGGGCTTCGGGGGCGGCCATGGGCTC
CCCGGAGGACGCGGGCAAGGCGCCGGCGTACCGAGTGGACCACCTGCTGAGCGCGGTGGAGAGCGAGCTGCAGGCGGGC
AGCGAGAAGGGAGACCCGACGGAGCGCGAGCTGCGCGTGGCGCTGGAGGACGGCGAGCTGTGNCTGCGCTTCAAGGAGC
TCACCAACGAGATGATCGTCACCAAGAACGGCAGGAGGATGTTCCCGGTGCTGAAGGTGAGCGTGTCGGGGCTGGACCC
CAACGCCATGTACTCCTTCCTGCTGGACTTCGTGGCGGCCGACGGGCACCGCTGGAAGTACGTCAACGGCGAGTGGGTG
CCGGGCGGCAAGCCGGAGCCGCAGGCGCCCAGCTGCGTCTACATCCACCCCGACTCGCCCAACTTCGGCGCCCACTGGA
TGAAGGCGCCCGTCTCCTTCAGCAAGGTCAAGCTCACCAACAAGCTCAACGGCGGCGGGCAGATCATGCTCAACTCCCT
GCACAAGTACGAGCCCCGCATCCACATCGTGCGGGTGGGCGGCCCGCAGCGGATGATCACCAGCCATTCCTTCCCCGAG
ACCCAGTTCACTGCCGTGACGGCGTACCAGAACGAGGAGATCACAGCTTTGAAAATTAAATACAACCCATTTGCGAAGG
CATTTCTTGACGCAAAGGAAAGAAATGATCACAAAGACATGATGGAGGAAGCGGGAGACAACCAGCAGTCTGGATACTC
GCAGTTAGGTAGTTGGCTTATTCCCGGGGCTGGGGCTCTGTGCCCACCTGCCAATCCTCACTCTCAGTTTGGAGCACCC
CTGTCTCTCTCCCCTGCTCACAGCTGTGAAAGGTACTCACCGCTGAGGAATCACCGTTCTGCCCCCTACCCCAATCCCT
ACACCCATAGAAACAACTCACCAACAGCTTACACTGATAACTCCTCTGCCTGCCTTCCCATGCTCCAGTCCCATGACAA
TTGGTCCTCCCTGGGAGTTCCCACACACACGACTATGCTGCCCATGAGCCACAGCACTGGCACAGCTACCAGCTCCAGT
CAGTACCCGAACTTATGGTCCGTGAGTAACAGCACCATCACCCCGGCGCCTCAGTCAAGCGGGATGTCCAACGGCCTGA
GCTCCCAGTTCCTGCGTGGCTCTCCGGTGCACTACACCGCTCTCCCACATCCCGTCACTGCCACCACCTCCACATCCCC
ACTGTACGATGGAGGAGCACCTGCAGACCTTCCTGACAGCCAGTACGATGCCTCTGCACACACTCGGTTGGCATCCATG
TGGACGCCCATCACCCCACCTTCCATGTAAACTCAGACCTCTACTTTAGAACAGACTTTTTTAGCTACTGAATTACTTT
AAATGCTTAATCCTCAAGGAAGAGAAAAAGGAGACGTGAAGGAAATTATAGATAAAGCATCTGCACTGCTTTGAGTAGA
GCATCCAAGTTATGTCTCTGATAGTGAACAGACCATCATTAACTTCATGCAGAGTTTACAAATCTGGTGAGCGTGCAAT
TCTGAGAGCAGACTGACTGCTTTTCATCTTTTTTGTTTTCTAGCTTGATAGGTCTAATTTTTAAGATTTTGACTTAGAT
TCCAAATTTCTCAGTGTTCTGATATATTTGGACCTCAAGTTTGGCATCTGGACAACTTTCTTGAGTAAGTTACTCCTGA
TTGGTTTTCTTTTTTTTTTTTTTTAAATGGCAAACCTAGGAATAGCCATATTACACTGTTATTAACCACCTAGGTAGAA
GCATTCTGAATTCTGCACAAGTGTAGCTGAGGATGGAAGTTTTTGGAAGATCACGTGCACTAATGCGTATTTGTCTCAC
AGATACGGTTGTGTTCTTAACTGTATGCTTGTTTCCTTGCTGCTGAATTACTGTTGAGACAATCTGCAAGAACTGTTTT
ACTCCTAATAAATTACAGTATTATCATTGGTCTAAATTGTTTTACCCCAGAGATTCCTTTTCGAGGTAAGTTTTGCTGT
TGATCACATTCAGACCCCTGTCAGCTTTGCCAAACGTCTTTATTTCAAACAGCCGGTGTCTTAATGTGAAGTCCTCTCC
AAAACCATTTCAACTCATTGAAAAACATCACGGTCTTTTATGATCTCTTGCTCAGGCCGTAAAGGGAGGGAATTCAATA
CCTGGAGAATCATTCTAATATATATATTTTTTTTCAATGTAATACTCTGTTGAATTGTATTTATTGTTTCTTAAGCTTG
CATCTTCCGTTCGTCTGCCACATTAAGGTATGTAAATAATCTGTCAATCTGCAGTGTATTTCTTTAGACAATGACGTGT
AGGATTTGTCACCCAATGGCGCATTGAACAACATGGGTGTCAGAAGTTAAATTATTGTGAGGGGGAAAGCTATAGTCCC
CGATAGCTGAAGGAAAACTGCAGATATACTAAGCTTTAAAATACATTGCTTGACTTGCTGTGAAGGCCAGGTCTTGATG
ATACACTGATAATAAGTACGATGACTTAGATTTCTAACGCAGACTAACTCATTGGCTCAAAGGGTACCCTTGGGCTTGT
CTGTTTCTCCCGCTACCTGGCAAGTTCATATCCTGAGCAAAATGGTTTGTTTTACATAAGCCATAGTGGATAACTTTTA
AAACGAAGTGCCTAATGTACTGAAGCAAAAATTCTAAATCAGGGAATTCCTTAAATAACTCTTCATTGTGTGCGCATGA
GTATGGTGGCAGCTTTAAGAGAAGAAGCAAATATTTGCACCATGTCAGTCTCGTTGTAACCTTATGGGCAGGTCCTGAC
CCCGAAGATTGTGTCAGGGTTTTTACCGCAGAATGATTTTGTGTGCAACTGCGGGATGCGGTCTCCGAGGTGCTCCATC
AAGAGATTGCACCAGCGGCAGATAGCTGTGCAACCCTGTTCTGTGTCAATAGTGTAAATATTGTTCTAAGCTCTCCTAT
TTTATTGTGAAAGGAAATTGTGTAAATGATGTAAGTGCATTATTATTTAGAATATTTTGTAGAAGATAGTGTTATTTCA
TTGTATTTTTTTTTTACTTGTACTTGGGAAGTATAATTTAAATTGG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3

Hensen's Node

Primitive Streak

 
4-6
stage 4
stage 4
stage 4
stage 6

Head Process

Hensen's Node

Mesoderm, early

Notochord

Primitive Streak

 
7-12
stage 7
stage 10
stage 11

Head Process

Hensen's Node

Notochord

Primitive Streak

 
13-18
stage 13
stage 15
stage 18
stage 18

Head Process

Hensen's Node

Hindbrain

Notochord

Primitive Streak

 
19-22
stage 22

Hindbrain

Notochord

Primitive Streak

 

Probe 3

GEISHA IdBrachyury.Jaffredo.2005
 NCBIEnsembl
Gene Name BRAC_CHICK
Gene Description Brachyury protein (T protein). [Source:Uniprot/SWISSPROT;Acc:P79777]
Gene Ontologyshow
GO:0001570 vasculogenesis IEA
GO:0001756 somitogenesis IEA
GO:0001839 neural plate morphogenesis IEA
GO:0001843 neural tube closure IEA
GO:0003677 DNA binding IEA
GO:0003700 transcription factor activity IEA
GO:0005634 nucleus IEA
GO:0005737 cytoplasm IEA
GO:0006350 transcription IEA
GO:0006355 regulation of transcription, DNA-dependent IEA
GO:0007275 multicellular organismal development IEA
GO:0008284 positive regulation of cell proliferation IEA
GO:0009653 anatomical structure morphogenesis IEA
GO:0009952 anterior/posterior pattern formation IEA
GO:0030903 notochord development IEA
Ensembl Genome Map
contig view
CitationJaffredo T, Bollerot K, Sugiyama D, Gautier R, Drevon C (2005). Tracing the hemangioblast during embryogenesis: developmental relationships between endothelial and hematopoietic cells. Int J Dev Biol. 2005;49(2-3):269-77.
Copyright"Reprinted from Int. J. Dev. Biol., 49,Jaffredo T, Bollerot K, Sugiyama D, Gautier R, Drevon C , Tracing the hemangioblast during embryogenesis: developmental relationships between endothelial and hematopoietic cells, 269-77, Copyright (2005), with permission from Copyright © 2005 UBC Press". All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204940).
Complete Sequenceshow
CGAGCTCGGGCGGAGGCAGCCGGGCCCCGCCGGCGGCGCTCGGGGAGGGGGGGGGGGCTTCGGGGGCGGCCATGGGCTC
CCCGGAGGACGCGGGCAAGGCGCCGGCGTACCGAGTGGACCACCTGCTGAGCGCGGTGGAGAGCGAGCTGCAGGCGGGC
AGCGAGAAGGGAGACCCGACGGAGCGCGAGCTGCGCGTGGCGCTGGAGGACGGCGAGCTGTGNCTGCGCTTCAAGGAGC
TCACCAACGAGATGATCGTCACCAAGAACGGCAGGAGGATGTTCCCGGTGCTGAAGGTGAGCGTGTCGGGGCTGGACCC
CAACGCCATGTACTCCTTCCTGCTGGACTTCGTGGCGGCCGACGGGCACCGCTGGAAGTACGTCAACGGCGAGTGGGTG
CCGGGCGGCAAGCCGGAGCCGCAGGCGCCCAGCTGCGTCTACATCCACCCCGACTCGCCCAACTTCGGCGCCCACTGGA
TGAAGGCGCCCGTCTCCTTCAGCAAGGTCAAGCTCACCAACAAGCTCAACGGCGGCGGGCAGATCATGCTCAACTCCCT
GCACAAGTACGAGCCCCGCATCCACATCGTGCGGGTGGGCGGCCCGCAGCGGATGATCACCAGCCATTCCTTCCCCGAG
ACCCAGTTCACTGCCGTGACGGCGTACCAGAACGAGGAGATCACAGCTTTGAAAATTAAATACAACCCATTTGCGAAGG
CATTTCTTGACGCAAAGGAAAGAAATGATCACAAAGACATGATGGAGGAAGCGGGAGACAACCAGCAGTCTGGATACTC
GCAGTTAGGTAGTTGGCTTATTCCCGGGGCTGGGGCTCTGTGCCCACCTGCCAATCCTCACTCTCAGTTTGGAGCACCC
CTGTCTCTCTCCCCTGCTCACAGCTGTGAAAGGTACTCACCGCTGAGGAATCACCGTTCTGCCCCCTACCCCAATCCCT
ACACCCATAGAAACAACTCACCAACAGCTTACACTGATAACTCCTCTGCCTGCCTTCCCATGCTCCAGTCCCATGACAA
TTGGTCCTCCCTGGGAGTTCCCACACACACGACTATGCTGCCCATGAGCCACAGCACTGGCACAGCTACCAGCTCCAGT
CAGTACCCGAACTTATGGTCCGTGAGTAACAGCACCATCACCCCGGCGCCTCAGTCAAGCGGGATGTCCAACGGCCTGA
GCTCCCAGTTCCTGCGTGGCTCTCCGGTGCACTACACCGCTCTCCCACATCCCGTCACTGCCACCACCTCCACATCCCC
ACTGTACGATGGAGGAGCACCTGCAGACCTTCCTGACAGCCAGTACGATGCCTCTGCACACACTCGGTTGGCATCCATG
TGGACGCCCATCACCCCACCTTCCATGTAAACTCAGACCTCTACTTTAGAACAGACTTTTTTAGCTACTGAATTACTTT
AAATGCTTAATCCTCAAGGAAGAGAAAAAGGAGACGTGAAGGAAATTATAGATAAAGCATCTGCACTGCTTTGAGTAGA
GCATCCAAGTTATGTCTCTGATAGTGAACAGACCATCATTAACTTCATGCAGAGTTTACAAATCTGGTGAGCGTGCAAT
TCTGAGAGCAGACTGACTGCTTTTCATCTTTTTTGTTTTCTAGCTTGATAGGTCTAATTTTTAAGATTTTGACTTAGAT
TCCAAATTTCTCAGTGTTCTGATATATTTGGACCTCAAGTTTGGCATCTGGACAACTTTCTTGAGTAAGTTACTCCTGA
TTGGTTTTCTTTTTTTTTTTTTTTAAATGGCAAACCTAGGAATAGCCATATTACACTGTTATTAACCACCTAGGTAGAA
GCATTCTGAATTCTGCACAAGTGTAGCTGAGGATGGAAGTTTTTGGAAGATCACGTGCACTAATGCGTATTTGTCTCAC
AGATACGGTTGTGTTCTTAACTGTATGCTTGTTTCCTTGCTGCTGAATTACTGTTGAGACAATCTGCAAGAACTGTTTT
ACTCCTAATAAATTACAGTATTATCATTGGTCTAAATTGTTTTACCCCAGAGATTCCTTTTCGAGGTAAGTTTTGCTGT
TGATCACATTCAGACCCCTGTCAGCTTTGCCAAACGTCTTTATTTCAAACAGCCGGTGTCTTAATGTGAAGTCCTCTCC
AAAACCATTTCAACTCATTGAAAAACATCACGGTCTTTTATGATCTCTTGCTCAGGCCGTAAAGGGAGGGAATTCAATA
CCTGGAGAATCATTCTAATATATATATTTTTTTTCAATGTAATACTCTGTTGAATTGTATTTATTGTTTCTTAAGCTTG
CATCTTCCGTTCGTCTGCCACATTAAGGTATGTAAATAATCTGTCAATCTGCAGTGTATTTCTTTAGACAATGACGTGT
AGGATTTGTCACCCAATGGCGCATTGAACAACATGGGTGTCAGAAGTTAAATTATTGTGAGGGGGAAAGCTATAGTCCC
CGATAGCTGAAGGAAAACTGCAGATATACTAAGCTTTAAAATACATTGCTTGACTTGCTGTGAAGGCCAGGTCTTGATG
ATACACTGATAATAAGTACGATGACTTAGATTTCTAACGCAGACTAACTCATTGGCTCAAAGGGTACCCTTGGGCTTGT
CTGTTTCTCCCGCTACCTGGCAAGTTCATATCCTGAGCAAAATGGTTTGTTTTACATAAGCCATAGTGGATAACTTTTA
AAACGAAGTGCCTAATGTACTGAAGCAAAAATTCTAAATCAGGGAATTCCTTAAATAACTCTTCATTGTGTGCGCATGA
GTATGGTGGCAGCTTTAAGAGAAGAAGCAAATATTTGCACCATGTCAGTCTCGTTGTAACCTTATGGGCAGGTCCTGAC
CCCGAAGATTGTGTCAGGGTTTTTACCGCAGAATGATTTTGTGTGCAACTGCGGGATGCGGTCTCCGAGGTGCTCCATC
AAGAGATTGCACCAGCGGCAGATAGCTGTGCAACCCTGTTCTGTGTCAATAGTGTAAATATTGTTCTAAGCTCTCCTAT
TTTATTGTGAAAGGAAATTGTGTAAATGATGTAAGTGCATTATTATTTAGAATATTTTGTAGAAGATAGTGTTATTTCA
TTGTATTTTTTTTTTACTTGTACTTGGGAAGTATAATTTAAATTGG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-30
stage 9

Primitive Streak

 
31-44
stage 44
 

Comparison with other genes

negative control for blood island label

Probe 4

GEISHA IdBrachyury.Mikawa.2004
 NCBIEnsembl
Gene NameTBRAC_CHICK
AliasesCH-T, T, brachyury homolog|brachyury (T), T, T, brachyury homolog (mouse), Official 
Gene DescriptionT, brachyury homolog (mouse)Brachyury protein (T protein). [Source:Uniprot/SWISSPROT;Acc:P79777]
Gene Ontologyshow
GO:0001570 vasculogenesis IEA
GO:0001756 somitogenesis IEA
GO:0001839 neural plate morphogenesis IEA
GO:0001843 neural tube closure IEA
GO:0003700 transcription factor activity IEA
GO:0005515 protein binding IEA
GO:0005634 nucleus IEA
GO:0005737 cytoplasm IEA
GO:0006355 regulation of transcription, DNA-dependent IEA
GO:0007275 multicellular organismal development IEA
GO:0008284 positive regulation of cell proliferation IEA
GO:0009653 anatomical structure morphogenesis IEA
GO:0030903 notochord development IEA
GO:0043565 sequence-specific DNA binding IEA
GO:0045944 positive regulation of transcription from RNA polymerase II promoter IEA
show
GO:0001570 vasculogenesis IEA
GO:0001756 somitogenesis IEA
GO:0001839 neural plate morphogenesis IEA
GO:0001843 neural tube closure IEA
GO:0003677 DNA binding IEA
GO:0003700 transcription factor activity IEA
GO:0005634 nucleus IEA
GO:0005737 cytoplasm IEA
GO:0006350 transcription IEA
GO:0006355 regulation of transcription, DNA-dependent IEA
GO:0007275 multicellular organismal development IEA
GO:0008284 positive regulation of cell proliferation IEA
GO:0009653 anatomical structure morphogenesis IEA
GO:0009952 anterior/posterior pattern formation IEA
GO:0030903 notochord development IEA
NCBI Nucleotide HitNM_204940 show details
scoreevaluealignment lengthdescription
31240.03127Gallus gallus T, brachyury homolog (mouse) (T), mRNA
Ensembl Genome Map
contig view
CitationMikawa, T, Poh, A, Kelly, K, Ishii, Y, Reese, D. Induction and Patterning of the Primitive Streak, an Organizing Center of Gastrulation in the Amniote. Dev Dyn. 2004 Mar;229(3):422-32.
CopyrightCopyright © 2004 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # U25176).
Complete Sequenceshow
CGAGCTCGGGCGGAGGCAGCCGGGCCCCGCCGGCGGCGCTCGGGGAGGGGGGGGGGGCTTCGGGGGCGGCCATGGGCTC
CCCGGAGGACGCGGGCAAGGCGCCGGCGTACCGAGTGGACCACCTGCTGAGCGCGGTGGAGAGCGAGCTGCAGGCGGGC
AGCGAGAAGGGAGACCCGACGGAGCGCGAGCTGCGCGTGGCGCTGGAGGACGGCGAGCTGTGNCTGCGCTTCAAGGAGC
TCACCAACGAGATGATCGTCACCAAGAACGGCAGGAGGATGTTCCCGGTGCTGAAGGTGAGCGTGTCGGGGCTGGACCC
CAACGCCATGTACTCCTTCCTGCTGGACTTCGTGGCGGCCGACGGGCACCGCTGGAAGTACGTCAACGGCGAGTGGGTG
CCGGGCGGCAAGCCGGAGCCGCAGGCGCCCAGCTGCGTCTACATCCACCCCGACTCGCCCAACTTCGGCGCCCACTGGA
TGAAGGCGCCCGTCTCCTTCAGCAAGGTCAAGCTCACCAACAAGCTCAACGGCGGCGGGCAGATCATGCTCAACTCCCT
GCACAAGTACGAGCCCCGCATCCACATCGTGCGGGTGGGCGGCCCGCAGCGGATGATCACCAGCCATTCCTTCCCCGAG
ACCCAGTTCACTGCCGTGACGGCGTACCAGAACGAGGAGATCACAGCTTTGAAAATTAAATACAACCCATTTGCGAAGG
CATTTCTTGACGCAAAGGAAAGAAATGATCACAAAGACATGATGGAGGAAGCGGGAGACAACCAGCAGTCTGGATACTC
GCAGTTAGGTAGTTGGCTTATTCCCGGGGCTGGGGCTCTGTGCCCACCTGCCAATCCTCACTCTCAGTTTGGAGCACCC
CTGTCTCTCTCCCCTGCTCACAGCTGTGAAAGGTACTCACCGCTGAGGAATCACCGTTCTGCCCCCTACCCCAATCCCT
ACACCCATAGAAACAACTCACCAACAGCTTACACTGATAACTCCTCTGCCTGCCTTCCCATGCTCCAGTCCCATGACAA
TTGGTCCTCCCTGGGAGTTCCCACACACACGACTATGCTGCCCATGAGCCACAGCACTGGCACAGCTACCAGCTCCAGT
CAGTACCCGAACTTATGGTCCGTGAGTAACAGCACCATCACCCCGGCGCCTCAGTCAAGCGGGATGTCCAACGGCCTGA
GCTCCCAGTTCCTGCGTGGCTCTCCGGTGCACTACACCGCTCTCCCACATCCCGTCACTGCCACCACCTCCACATCCCC
ACTGTACGATGGAGGAGCACCTGCAGACCTTCCTGACAGCCAGTACGATGCCTCTGCACACACTCGGTTGGCATCCATG
TGGACGCCCATCACCCCACCTTCCATGTAAACTCAGACCTCTACTTTAGAACAGACTTTTTTAGCTACTGAATTACTTT
AAATGCTTAATCCTCAAGGAAGAGAAAAAGGAGACGTGAAGGAAATTATAGATAAAGCATCTGCACTGCTTTGAGTAGA
GCATCCAAGTTATGTCTCTGATAGTGAACAGACCATCATTAACTTCATGCAGAGTTTACAAATCTGGTGAGCGTGCAAT
TCTGAGAGCAGACTGACTGCTTTTCATCTTTTTTGTTTTCTAGCTTGATAGGTCTAATTTTTAAGATTTTGACTTAGAT
TCCAAATTTCTCAGTGTTCTGATATATTTGGACCTCAAGTTTGGCATCTGGACAACTTTCTTGAGTAAGTTACTCCTGA
TTGGTTTTCTTTTTTTTTTTTTTTAAATGGCAAACCTAGGAATAGCCATATTACACTGTTATTAACCACCTAGGTAGAA
GCATTCTGAATTCTGCACAAGTGTAGCTGAGGATGGAAGTTTTTGGAAGATCACGTGCACTAATGCGTATTTGTCTCAC
AGATACGGTTGTGTTCTTAACTGTATGCTTGTTTCCTTGCTGCTGAATTACTGTTGAGACAATCTGCAAGAACTGTTTT
ACTCCTAATAAATTACAGTATTATCATTGGTCTAAATTGTTTTACCCCAGAGATTCCTTTTCGAGGTAAGTTTTGCTGT
TGATCACATTCAGACCCCTGTCAGCTTTGCCAAACGTCTTTATTTCAAACAGCCGGTGTCTTAATGTGAAGTCCTCTCC
AAAACCATTTCAACTCATTGAAAAACATCACGGTCTTTTATGATCTCTTGCTCAGGCCGTAAAGGGAGGGAATTCAATA
CCTGGAGAATCATTCTAATATATATATTTTTTTTCAATGTAATACTCTGTTGAATTGTATTTATTGTTTCTTAAGCTTG
CATCTTCCGTTCGTCTGCCACATTAAGGTATGTAAATAATCTGTCAATCTGCAGTGTATTTCTTTAGACAATGACGTGT
AGGATTTGTCACCCAATGGCGCATTGAACAACATGGGTGTCAGAAGTTAAATTATTGTGAGGGGGAAAGCTATAGTCCC
CGATAGCTGAAGGAAAACTGCAGATATACTAAGCTTTAAAATACATTGCTTGACTTGCTGTGAAGGCCAGGTCTTGATG
ATACACTGATAATAAGTACGATGACTTAGATTTCTAACGCAGACTAACTCATTGGCTCAAAGGGTACCCTTGGGCTTGT
CTGTTTCTCCCGCTACCTGGCAAGTTCATATCCTGAGCAAAATGGTTTGTTTTACATAAGCCATAGTGGATAACTTTTA
AAACGAAGTGCCTAATGTACTGAAGCAAAAATTCTAAATCAGGGAATTCCTTAAATAACTCTTCATTGTGTGCGCATGA
GTATGGTGGCAGCTTTAAGAGAAGAAGCAAATATTTGCACCATGTCAGTCTCGTTGTAACCTTATGGGCAGGTCCTGAC
CCCGAAGATTGTGTCAGGGTTTTTACCGCAGAATGATTTTGTGTGCAACTGCGGGATGCGGTCTCCGAGGTGCTCCATC
AAGAGATTGCACCAGCGGCAGATAGCTGTGCAACCCTGTTCTGTGTCAATAGTGTAAATATTGTTCTAAGCTCTCCTAT
TTTATTGTGAAAGGAAATTGTGTAAATGATGTAAGTGCATTATTATTTAGAATATTTTGTAGAAGATAGTGTTATTTCA
TTGTATTTTTTTTTTACTTGTACTTGGGAAGTATAATTTAAATTGG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 1
stage 1
stage 3
stage 3
stage 3
stage 3

Area Pellucida

Kohler's Sickle

Primitive Streak

Unlabeled Embryonic

marginal zone posterior to Koller's sickle

4-6
stage 4

Primitive Streak

Brachyury (bluish purple)

Chordin (red)

7
stage 7

Primitive Streak

Brachyury (bluish purple)

Chordin (red)

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