Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

CALB1
calbindin 1

Gene

Official Symbol	CALB1
Official Full Name	calbindin 1
CGNC ID	11874
also known as	calbindin\|CaBP-28\|D-28K\|calbindin 1, 28kDa\|calbindin D28\|vitamin D-dependent calcium-binding protein, avian-type\|vitamin D-induced calbindin-D28K
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_205513
Polypeptide	NP_990844
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.3286

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	793	ENSG00000104327		MIM:114050
Mouse	12307		All phenotypic alleles (4):Targeted, knock-out(1) Targeted, other(3)	MGI:88248
Xenopus	780272, 447641, 399307			951982
Zebrafish	100001650	ENSDARG00000031598	ZDB-GENE-030131-8107	ZFIN:ZDB-GENE-030131-8107

Gene Ontology

Molecular Function	calcium ion binding, vitamin D binding
Biological Process	calcium ion transport, cellular calcium ion homeostasis, cellular response to organic substance, more...
Cellular Component	axon, cytosol, dendrite, neuronal cell body, nucleus, postsynaptic membrane, vesicle membrane

Links to other databases

Entrez Gene	396519
Ensembl Gene
KEGG	gga:396519

Entry 1

GEISHA Id	CALB1.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	GTCTTGGAATCCTGGCTAAGTGAC
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGGTCTGTGTATGGAAGCAACGCAG	cDNA Template Length	655
Complete cDNA Template Probe	show GTCTTGGAATCCTGGCTAAGTGACAGATAGCATAGTTAATACACAGATTAATATATGATATTATAAGTGTACCTTTCAT GACTATTGCTGTGTCAGAGAATATGACAATCCATTTTCTAAACTATTTTCACATTTTGCAGGTTATATTATTCTAGTAA ATTGCTGTTTTTACATCATATTCTGTGTAACCTATAATTAAATTTAATATCCTAAGACTATTGTTGTCTAGTTTGTCTA TCTCCTGGATGCTCTTTTCTGTACCATGTAAAGGACAAAACAGTTATTTTGAAAAATTGTGCCTCTTGGATCTTACACT GAGTTATTAATCTGTAATAATACTAATAAAAGGTAACACTAAAATAAACACAAGACCTAGTAAAGATTTTATAACAGTT TAGTAATTCGGTTTACCAGTGCTCTGCTTTTTATTAAGCTAGAGAGGTATTTTTTAAAATGTGAAATATAATATGGAAC AAGCTCTTTCTTCTTCCCGTCTTCCTTTTTTTTTTGGCCTGGTTCTTTTACTTTGCACCATCTTTGTTCCAGCACCTCC ATGAACATCCAGGCCACCCATCGCACTCAGTATATACTGGTGTAGGAAGGAAATTGGGCTGTGTCTTAAAGTCATTAAA TCTGCGTTGCTTCCATACACAGA

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 12

Unlabeled

no expression HH12 and younger

13-18

stage 18

Unlabeled

trapping

19-24

stage 23

Foregut
Neural Plate/Tube
Sclerotome

extremely faint expression

25-27

stage 27

Foregut
Head Mesenchyme
Neural Plate/Tube
Outflow Tract
Pharyngeal Arches and Clefts
Sclerotome
Wing Mesenchyme

Entry 2

GEISHA Id	CALB1.Hiel.2002	Data Source	Publication
Complete cDNA Template Probe	show CCTCGAGTCGTCGTCGCCGCAGCTGCCGCCGTCGCCGCTCGGCCGCGGGCACAGTCAGCACCGCGGACAGCGCCCCCGC TGAGCCCCCTCTGCACCCCCAACATGACGGCGGAGACGCACCTGCAGGGCGTGGAGATCTCGGCCGCCCAGTTCTTCGA GATCTGGCACCACTACGACTCCGACGGCAATGGGTACATGGATGGGAAGGAGCTACAAAACTTCATCCAGGAGCTGCAG CAGGCGCGGAAGAAGGCAGGCTTGGACTTAACACCTGAAATGAAAGCTTTTGTGGACCAGTATGGCAAGGCCACTGATG GAAAAATAGGAATCGTTGAGCTTGCTCAGGTGTTGCCGACGGAGGAGAATTTCCTGTTGTTCTTTAGGTGCCAGCAGCT AAAGTCAAGTGAAGACTTCATGCAGACATGGAGAAAATATGACAGTGACCACAGTGGTTTCATTGATTCTGAGGAACTT AAGAGTTTCTTGAAAGATTTATTACAGAAAGCAAATAAGCAGATTGAAGACTCAAAGCTAACAGAATATACAGAAATAA TGCTCAGGATGTTTGATGCAAACAATGATGGAAAATTGGAGCTTACTGAACTGGCCAGGCTACTCCCAGTACAGGAAAA TTTTCTTATTAAATTTCAGGGTGTCAAAATGTGTGCAAAAGAGTTCAATAAAGCCTTTGAGATGTACGATCAAGATGGC AATGGATATATAGATGAAAATGAACTTGATGCACTACTGAAGGATCTCTGTGAAAAGAACAAAAAGGAATTAGACATTA ACAACCTTGCGACATACAAGAAAAGCATCATGGCCTTGTCTGATGGAGGGAAGCTTTACCGAGCAGAACTGGCTCTCAT TCTCTGTGCTGAGGAAAATTAAAACTCTTCTCTCATGTCCACTTAACTAGTGATGTATTCTATCTACACAATAACTGTG CACTATAAGGGAGTAGGCTGTATTTTTAAACTGCATATAGAAAATTAGCCAGGATGTGTGGCACATTCCTTTAAGTTTG TTTCTATACTGTTTGTAATGTACAGTTTTTGTAACAATAAGATTGATAAAGAGAATGTCTATGTTTGGGCCAGTCTGTA TATTCAAAAGAAACTAAAACATGTTGGGGTTGGATTTTTTTTTTTTTTTTTGGCTTTTTTGGCTCTTTTTTTTTTGCTT TCATGAACATGCCTGAAAAAAAATTACACCTGCTGATGTTGTGGTCATCATATCCTTTGACACTTGCAACATTTTTCCT TGTTTGATCTACATAACAAAAGGCCTAGAAATCTCTCTCCCACTTACAACTACACACATTTGGGTTTTTTTGTTTGGGT TGTTGGTTTTTTTTTTAATGTATGATACAAATTCAGAAGAAATATGATTTAGGTTGTAATAGGATAAAGAAGTAGGCAT GTTTACACTCCAAAAGGTACCGAGAAATATTTCCAGTTGTCAAACCACCCACTTACAGGTCTGTGCTCTCTGTAGTTTT TCAACTACTCTTCTCATTATGAACTCAAAGTATATAGAGGAAGCATTTATCTGGAATAGAACTCCATGCAGTAGTTGAC AAAAATATACTGTTCTCAAACTTGCTGTTTAACTTTACTGAATTTAAACATAGGCACTTCAGAAACAAATGCCTTTAAT CTGTCTTGGAATCCTGGCTAAGTGACAGATAGCATAGTTAATACACAGATTAATATATGATATTATAAGTGTACCTTTC ATGACTATTGCTGTGTCAGAGAATATGACAATCCATTTTCTAAACTATTTTCACATTTTGCAGGTTATATTATTCTAGT AAATTGCTGTTTTTACATCATATTCTGTGTAACCTATAATTAAATTTAATATCCTAAGACTATTGTTGTCTAGTTTGTC TATCTCCTGGATGCTCTTTTCTGTACCATGTAAAGGACAAAACAGTTATTTTGAAAAATTGTGCCTCTTGGATCTTACA CTGAGTTATTAATCTGTAATAATACTAATAAAAGGTAACACTAAAATAAACACAAGACCTAGTAAAGATTTTATAACAG TTTAGTAATTCGGTTTACCAGTGCTCTGCTTTTTATTAAGCTAGAGAGGTATTTTTTAAAATGTGAAATATAATATGGA ACAAGCTCTTTCTTCTTCCCGTCTTCCTTTTTTTTTTGGCCTGGTTCTTTTACTTTGCACCATCTTTGTTCCAGCACCT CCATGAACATCCAGGCCACCCATCGCACTCAGTATATACTGGTGTAGGAAGGAAATTGGGCTGTGTCTTAAAGTCATTA AATCTGCGTTGCTTCCATACACAGAAAGCTATTTCAGAAGCAGGTTAGAAGATTAGCTTTATATAACTTCTCAAATGCA TCTCTTAACAAGCAGAAGGAAATGCATTTTATTTGAAATGTATCTCAAGCAATGAGGCTCAGATCCTTCAAGATTATTT TGGCACTGAAATCCCACTGAAATTAATCCGTGACCTCAGGTGAACTCAGGCAACTAAATGTCATTTCAGAAACAGCCTT AAGGCCCCAGGTTCCCTCAGCCTTGGTCTTGGCATGTTATGGAGTGCAGGATGGGCCTTGCTGAAGAAAGGCACAAAAA CTGAACTGAGATTAATTTAGCTCGTTCCCATGGCTTTACTTCCACTCCACACAGTGATTTAACTTCTCACCTGCTTGTT CGCTCTATGCAATGTGAAATACAATTGTGTATGTAAAGTGAAGGAATAGTGAATAGATTATCTGCCTATACAGTATATA ATGATTGATATTGTTCATCTTGTGC
Citation	Hiel H, Navaratnam DS, Oberholtzer JC, Fuchs PA. Topological and developmental gradients of calbindin expression in the chick's inner ear. J Assoc Res Otolaryngol. 2002 Mar;3(1):1-15.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. # NM_205513.1).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

31-42

stage 36

stage 38

stage 42

Ear/Otic Placode
Unlabeled

Stage 36+

Entry 3

GEISHA Id	CALBINDIN.Heller.1998	Data Source	Publication
Complete cDNA Template Probe	show ATGACGGCGGAGACGCACCTGCAGGGCGTGGAGATCTCGGCCGCCCAGTTCTTCGAGATCTGGCACCACTACGACTCCG ACGGCAATGGGTACATGGATGGGAAGGAGCTACAAAACTTCATCCAGGAGCTGCAGCAGGCGCGGAAGAAGGCAGGCTT GGACTTAACACCTGAAATGAAAGCTTTTGTGGACCAGTATGGCAAGGCCACTGATGGAAAAATAGGAATCGTTGAGCTT GCTCAGGTGTTGCCGACGGAGGAGAATTTCCTGTTGTTCTTTAGGTGCCAGCAGCTAAAGTCAAGTGAAGACTTCATGC AGACATGGAGAAAATATGACAGTGACCACAGTGGTTTCATTGATTCTGAGGAACTTAAGAGTTTCTTGAAAGATTTATT ACAGAAAGCAAATAAGCAGATTGAAGACTCAAAGCTAACAGAATATACAGAAATAATGCTCAGGATGTTTGATGCAAAC AATGATGGAAAATTGGAGCTTACTGAACTGGCCAGGCTACTCCCAGTACAGGAAAATTTTCTTATTAAATTTCAGGGTG TCAAAATGTGTGCAAAAGAGTTCAATAAAGCCTTTGAGATGTACGATCAAGATGGCAATGGATATATAGATGAAAATGA ACTTGATGCACTACTGAAGGATCTCTGTGAAAAGAACAAAAAGGAATTAGACATTAACAACCTTGCGACATACAAGAAA AGCATCATGGCCTTGTCTGATGGAGGGAAGCTTTACCGAGCAGAACTGTCTCTCATTCTCTGTGCTGAGGAAAATTAA
Citation	Heller S, Sheane CA, Javed Z, Hudspeth AJ. Molecular markers for cell types of the inner ear and candidate genes for hearing disorders. Proc Natl Acad Sci U S A. 1998 Sep 15;95(19):11400-5.
Copyright	Copyright © 2012 National Academy of Sciences. All rights reserved.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_205513 ).