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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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CBLN2
cerebellin 2 precursor

Gene

Official Symbol	CBLN2
Official Full Name	cerebellin 2 precursor
CGNC ID	22073
also known as	cerebellin-2
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001171768
Polypeptide	NP_001165239
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.25169

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	421019
Ensembl Gene
KEGG	gga:421019

Entry 1

GEISHA Id	CBLN2	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	5'-ACGGCTACCCAGTGATTTCAGC-3'
Reverse cDNA Template Primer	5'-AATTAACCCTCACTAAAGGTAATGTCCAGAATACCCCTCCCCC-3'	cDNA Template Length	762
Complete cDNA Template Probe	show ACGGCTACCCAGTGATTTCAGCTTTTGCAGGGGATCAGGACGTCACCAGAGAAGCAGCCAGCAACGGGGTTTTGCTCCT CATGGAAAGAGAAGACAAAGTGCATCTCAAACTGGAAAGGGGTAACCTCATGGGAGGGTGGAAATATTCAACCTTTTCT GGCTTCTTAGTCTTTCCGCTATAAAAGAAGGCCAACTAGGAGACAGATTGATGAGCTGGAGCAAGAATTCAGTTAACAA CACCCTGAACTTGGCAGCACACGACAATATTTCCAGTCACCCCATCAGACTGTCACAGTAGAAGAACGATGACCTTCTA AACTCCAACATTTGCTTTGAATATTGACAATTCCTCGGGAACCTGCGCCTCTAATTAGTTTTAGACGACAGTGATCTTT AGGAGAAATGAAATTATCGACCTGAGCAATTTGTACCTGTGATTGTAAAGTCAATTTTGGATTTTATTGTTGGGATCAT TGACTTTCTTCTTTTTTATTATTTTTTTCCCTCTTGTTCATTTTTTCCCCTCTTCTTTCTCTTCTTGTTCCAATGAGAC AAATTACTTGGACCACGCAATCGCTTTGTCAGAGGCTCAATCCAGAGCCAGAAGAATGAAGTGTTGAGCCCAATGAGGT GTTCTTTCCATGCTTTATTTCTTTGTGTTGTATAGCCTTAAGGAAAAAAAGAAAAAAAAAAAAGAAAAAAAAAAGAATG GCTTCAGTCTCAATCCTGTATTTTTCTGGGGGAGGGGTATTCTGGACATTA

Stage

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Location (click to highlight)

Comments (click to highlight)

1-3

stage 3

Early Mesoderm
Epiblast
Primitive Streak

4-6

stage 5

stage 6

Area Opaca
Early Mesoderm
Epiblast
Extraembryonic Mesoderm
Germinal Crescent
Lateral Plate Mesoderm
Neural Plate/Tube

7-12

stage 8

Anterior Intestinal Portal
Blood
Forebrain
Hindbrain
Lateral Plate Mesoderm
Mesoderm
Midbrain
Neural Plate/Tube
extraembryonic ectoderm
extraembryonic endoderm

13-18

stage 13

stage 15

stage 16

Aorta
Blood
Blood Islands
Forebrain
Head Mesenchyme
Heart
Hindbrain
Midbrain
Neural Plate/Tube
Pharyngeal Arches and Clefts
Pronephros
Sclerotome

19-24

stage 20

stage 22

Blood
Myotome
Sclerotome
Widespread Expression

25-27

stage 27

Blood
Foregut
Leg Mesenchyme
Sclerotome
Sinus Venosus
Somatic Mesoderm
Spinal Cord
Spinal Ganglia and Nerves
Wing Mesenchyme

Entry 2

GEISHA Id	CBLN2.Yang.2010	Data Source	Publication
Complete cDNA Template Probe	show CAGAACGACACGGAGCCCATCGTCCTGGAGGGGAAGTGCCTGGTGGTGTGCGACTCCAGCCCTTCGGCCGACGGCGCCA TCACCTCCTCCCTGGGGATCTCCGTGCGCTCGGGCAGCGCCAAGGTGGCCTTCTCGGCCACCCGCAGCACCAACCACGA GCCCTCCGAGATGAGCAACCGCACCATGACCATCTACTTCGACCAGGTATTAGTTAATATTGGCAACCATTTTGATCTT GCTTCCAGTATATTTGTAGCACCAAGGAAAGGGATATATAGTTTCAGTTTCCACGTGGTCAAGGTCTATAACAGACAAA CAATCCAGGTAAGTTTAATGCAAAACGGCTACCCAGTGATTTCAGCTTTTGCAGGGGATCAGGACGTCACCAGAGAAGC AGCCAGCAACGGGGTTTTGCTCCTCATGGAAAGAGAAGACAAAGTGCATCTCAAACTGGAAAGGGGTAACCTCATGGGA GGGTGGAAATATTCAACCTTTTCTGGCTTCTTAGTCTTTCCGCTATAAAAGAAGGCCAACTAGGAGACAGATTGATGAG CTGGAGCAAGAATTCAGTTAACAACACCCTGAACTTGGCAGCACACGACAATATTTCCAGTCACCCCATCAGACTGTCA CAGTAGAAGAACGATGACCTTCTAAACTCCAACATTTGCTTTGAATATTGACAATTCCTCGGGAACCTGCGCCTCTAAT TAGTTTTAGACGACAGTGATCTTTAGGAGAAATGAAATTATCGACCTGAGCAATTTGTACCTGTGATTGTAAAGTCAAT TTTGGATTTTATTGTTGGGATCATTGACTTTCTTCTTTTTTATTATTTTTTTCCCTCTTGTTCATTTTTTCCCCTCTTC TTTCTCTTCTTGTTCCAATGAGACAAATTACTTGGACCACGCAATCGCTTTGTCAGAGGCTCAATCCAGAGCCAGAAGA ATGAAGTGTTGAGCCCAATGAGGTGTTCTTTCCATGCTTTATTTCTTTGTGTTGTATAGCCTTAAGGAAAAAAAGAAAA AAAAAAAAGAAAAAAAAAAGAATGGCTTCAGTCTCAATCCTGTATTTTTCTGGGGGAGGGGTATTCTGGACATTACTGT GTCAAGAAGTGCTTTATCCAGTGAAGCAAAATTTGCACGATTGGAATCTTATTTGTTTTGTGTTGTTCGTGTTTTTCAT CGACTTTTTTTTTCCTGATTTTTATTTGTATGCGCTAAAAATGTAAGCTAGATTGATCAATAAGGCAAAACAAAGCACA TATATACCCTGTAGCTCTAAGTAAAGCTAACCAGTGAACAATTGTTGTCTACACTTCCAGCTGATCTTTATAGACCTAT TAAAAAGAGAGGAAAAAAAAGAGAGAGCTACATGATCCTTCAGTTACGATCTGGAAACCAGTAAAGGAACTGACATTTC TGAATGGCCCTGACATTTCTAGAAGCAACAATGGAGGCTTTGAATATCTTAACTGACCATACCCTAAAATATGTCCTTT CTTTGCATTACCAAACATGATTTGGGTGCTTTTAGCTAACATTTATTTCATGTATTTTTTCACCAATGCTTGTGTATGT ATTGTGAGAGCTCAGAGAGATGGCGGAGCAAACTCTTCCTCTTCCACCTTAAATAAAACCACCTCCACTAGCCTGTCCA TGGCAAGTATCTAAGCACCTGCCCCTAGCATCTTTGACAGCATTTGGGAGTGGGACCTCAGAGGATCAGCGAATGCACC AGAAATTGTGCAGGTGCCATGTATTTATCAGCTGTTTGTGTTCTGACCAACACAAATGGCCTCTGAGTTGTGGGGGTGC AAAGCAATCGGTACTGG
Citation	Yang M, Cagle MC, Honig MG. Identification of cerebellin2 in chick and its preferential expression by subsets of developing sensory neurons and their targets in the dorsal horn. J Comp Neurol. 2010 Jul 15;518(14):2818-40.
Copyright	Copyright © 2010 Wiley-Liss, Inc.
Comments	The cDNA template used to generate the probe was obtained by PCR as described in the paper.

Stage

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Location (click to highlight)

Comments (click to highlight)

19-24

stage 24

Spinal Cord
Spinal Ganglia and Nerves

25-30

stage 25

stage 26

stage 30

Peripheral Nervous System
Spinal Cord
Spinal Ganglia and Nerves

31-37

stage 37

Spinal Cord

Entry 3

GEISHA Id	CBLN2.Renier.2011	Data Source	Publication
Complete cDNA Template Probe	show CGAGCTCCGCAGCCAGCCCTCCTCTCCCGCCATGGACCTCCCAGGCTGCGCGCCGCCCGCCCTCTGAGGGAGCTCCTTC GCCCCACGCGGAGGAGCAGGAGGAGGAGGAGGAAAAGGGAGTAAGGCGCGGCCCCGCCGCCGCCCAGCCGCCGTCCCGC CGAGCGCTGGCCGCGGGGCGCCGCGGCGGCAGCAGGCGCGCAGCCCCCTCCGCCTCCCCGCGCCCGCCCGGCGGCGGAG AGCCCGAGAGGCGGCGGTCCGGCGCGGGGCATGGGGCGGCGGCGGCGGGGGGCGCTGCCCGAGGCGGCGGGCGGCTGCT GCTGCTGCCTGGCGGCGGCGCTGCCGCTGCTGCTGCTGCTGCTGCCCGCCGGGTGCCCGGTGCGGGCGCAGAACGACAC GGAGCCCATCGTCCTGGAGGGGAAGTGCCTGGTGGTGTGCGACTCCAGCCCTTCGGCCGACGGCGCCATCACCTCCTCC CTGGGGATCTCCGTGCGCTCGGGCAGCGCCAAGGTGGCCTTCTCGGCCACCCGCAGCACCAACCACGAGCCCTCCGAGA TGAGCAACCGCACCATGACCATCTACTTCGACCAGGTATTAGTTAATATTGGCAACCATTTTGATCTTGCTTCCAGTAT ATTTGTAGCACCAAGGAAAGGGATATATAGTTTCAGTTTCCACGTGGTCAAGGTCTATAACAGACAAACAATCCAGGTA AGTTTAATGCAAAACGGCTACCCAGTGATTTCAGCTTTTGCAGGGGATCAGGACGTCACCAGAGAAGCAGCCAGCAACG GGGTTTTGCTCCTCATGGAAAGAGAAGACAAAGTGCATCTCAAACTGGAAAGGGGTAACCTCATGGGAGGGTGGAAATA TTCAACCTTTTCTGGCTTCTTAGTCTTTCCGCTATAAAAGAAGGCCAACTAGGAGACAGATTGATGAGCTGGAGCAAGA ATTCAGTTAACAACACCCTGAACTTGGCAGCACACGACAATATTTCCAGTCACCCCATCAGACTGTCACAGTAGAAGAA CGATGACCTTCTAAACTCCAACATTTGCTTTGAATATTGACAATTCCTCGGGAACCTGCGCCTCTAATTAGTTTTAGAC GACAGTGATCTTTAGGAGAAATGAAATTATCGACCTGAGCAATTTGTACCTGTGATTGTAAAGTCAATTTTGGATTTTA TTGTTGGGATCATTGACTTTCTTCTTTTTTATTATTTTTTTCCCTCTTGTTCATTTTTTCCCCTCTTCTTTCTCTTCTT GTTCCAATGAGACAAATTACTTGGACCACGCAATCGCTTTGTCAGAGGCTCAATCCAGAGCCAGAAGAATGAAGTGTTG AGCCCAATGAGGTGTTCTTTCCATGCTTTATTTCTTTGTGTTGTATAGCCTTAAGGAAAAAAAGAAAAAAAAAAAAGAA AAAAAAAAGAATGGCTTCAGTCTCAATCCTGTATTTTTCTGGGGGAGGGGTATTCTGGACATTACTGTGTCAAGAAGTG CTTTATCCAGTGAAGCAAAATTTGCACGATTGGAATCTTATTTGTTTTGTGTTGTTCGTGTTTTTCATCGACTTTTTTT TTCCTGATTTTTATTTGTATGCGCTAAAAATGTAAGCTAGATTGATCAATAAGGCAAAACAAAGCACATATATACCCTG TAGCTCTAAGTAAAGCTAACCAGTGAACAATTGTTGTCTACACTTCCAGCTGATCTTTATAGACCTATTAAAAAGAGAG GAAAAAAAAGAGAGAGCTACATGATCCTTCAGTTACGATCTGGAAACCAGTAAAGGAACTGACATTTCTGAATGGCCCT GACATTTCTAGAAGCAACAATGGAGGCTTTGAATATCTTAACTGACCATACCCTAAAATATGTCCTTTCTTTGCATTAC CAAACATGATTTGGGTGCTTTTAGCTAACATTTATTTCATGTATTTTTTCACCAATGCTTGTGTATGTATTGTGAGAGC TCAGAGAGATGGCGGAGCAAACTCTTCCTCTTCCACCTTAAATAAAACCACCTCCACTAGCCTGTCCATGGCAAGTATC TAAGCACCTGCCCCTAGCATCTTTGACAGCATTTGGGAGTGGGACCTCAGAGGATCAGCGAATGCACCAGAAATTGTGC AGGTGCCATGTATTTATCAGCTGTTTGTGTTCTGACCAACACAAATGGCCTCTGAGTTGTGGGGGTGCAAAGCAATCGG TACTGGAGGTGAGGAAAAGTTATTACACCAGTTGACAAGAGGAAAAATGCCAGGCCAGCATCAAACGCATACTTTTGCC TCATTCTCATCAAATAAATCTTATGTCTTCACTTTATGACAGTGTGCTGAGGACGTACTTGCATGAGGAGATCCAGGAG GGATGTTTATATTCTTTGATATGATTTTAACTTCATTTATTTAAATATTTCATCTTGTTATTAAGCCCACATGAGTGGA TATGTATAAGAATTTATTTTTTATCAGATTTACTCCTCTGCCACAAACAAATATAATGCAAAGGCATTTGCAGCAAGTT GGTGGTAGCTATGTTGTATTTCAAAATTATGGTGGACATGTCATTTTCATTGTAAATTTATCATTAAAGGGACAAAATC AATTAAAATCATATATTCTTTAAAAAAATCTTATCTGTGTTGCTTATGATA
Citation	Reiner A, Yang M, Cagle MC, Honig MG. Localization of Cerebellin-2 in Late Embryonic Chicken Brain: Implications for a Role in Synapse Formation and for Brain Evolution. J Comp Neurol. 2011 August 1; 519(11): 22252251.
Copyright	Copyright © 2011 Wiley-Liss, Inc.

Stage

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Location (click to highlight)

Comments (click to highlight)

31-40

stage 40

Cranial Ganglia
Diencephalon
Forebrain
Hindbrain
Isthmus/MHB
Midbrain
Retina
Telencephalon

Entry 4

GEISHA Id	CBLN2.Anderson.2020	Data Source	Direct Submission
Complete cDNA Template Probe	show CACCCGCCGGGTGCCCGGTGCGGGCGCAGAACGACACGGAGCCCATCGTCCTGGAGGGGAAGTGCCTGGTGGTGTGCGA CTCCAGCCCTTCGGCCGACGGCGCCATCACCTCCTCCCTGGGGATCTCCGTGCGCTCGGGCAGCGCCAAGGTGGCCTTC TCGGCCACCCGCAGCACCAACCACGAGCCCTCCGAGATGAGCAACCGCACCATGACCATCTACTTCGACCAGGTATTAG TTAATATTGGCAACCATTTTGATCTTGCTTCCAGTATATTTGTAGCACCAAGGAAAGGGATATATAGTTTCAGTTTCCA CGTGGTCAAGGTCTATAACAGACAAACAATCCAGGTAAGTTTAATGCAAAACGGCTACCCAGTGATTTCAGCTTTTGCA GGGGATCAGGACGTCACCAGAGAAGCAGCCAGCAACGGGGTTTTGCTCCTCATGGAAAGAGAAGACAAAGTGCATCTCA AACTGGAAAGGGGTAACCTCATGGGAGGGTGGAAATATTCAACCTTTTCTGGCTTCTTAGTCTTTCCGCTATAAAAGAA GGCCAACTAGGAGACAGATTGATGAGCTGGAGCAAGAATTCAGTTAACAACACCCTGAACTTGGCAGCACACGACAATA TTTCCAGTCACCCCATCAGACTGTCACAGTAGAAGAACGATGACCTTCTAAACTCCA
Comments	Images and probe sequence provided by Claire Anderson. The probe was synthesized from cDNA clone ChEST718g2.