GEISHA - A Chicken Embryo Gene Expression Database
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CCDC88A
coiled-coil domain containing 88A

Gene
Official SymbolCCDC88A
Official Full Namecoiled-coil domain containing 88A
CGNC ID6139
also known asgirdin
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNAXM_419285
PolypeptideXP_419285
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.49565
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human55704ENSG00000115355MIM:609736
Mouse108686ENSMUSG00000032740All phenotypic alleles (3):Targeted, other(3) MGI:1925177
Xenopus100380128, 4319735883976
Zebrafish100498671ZDB-GENE-100701-2, ZDB-GENE-100701-3ZFIN:ZDB-GENE-100701-2, ZFIN:ZDB-GENE-100701-3
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene421210
Ensembl GeneENSGALG00000008104
KEGGgga:421210
GEISHA IdCCDC88A.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template Primer5'-GGAATAATGCTACACTTCAAGCGG-3'
Reverse cDNA Template Primer5'-AATTAACCCTCACTAAAGGGAACTATCCTGACTGTCCTGGTG-3'cDNA Template Length1171
Complete cDNA Template Probeshow
GGAATAATGCTACACTTCAAGCGGAGAAGCAAGCACTGAAAACACAATTAAAGCAGCTGGAGACACAGAATAACAATCT
GCAAGCTCAGATTCTTGCACTTCAGAGACAGACCGTTTCTCTACAGGAGCAGAACACAACTCTGCAGACTCAAAATGCC
AAACTTCAGGTTGAAAATTCTACCCTTAATTCTCAAAGTACATCTCTAATGAATCAGAATGCACAACTGTTGATTCAAC
AGTCTGCTTTAGAAAATGAGAAGGAAGGTGTGCTCAAGGAGCTTGAGGATCTGAAGTCATTGTATGATTCACTTCTGAA
AGACCACGAAAAACTGGAGCACCTCCATGAACGCCAGGCTTCTGAGTATGAGTCGCTGATTGCTAAACATGGAAGTCTT
AAATCTGCACACAAAAATCTGGAGGTGGAACATAAGGACTTGGAAGATAGGTACAGTCAGTTGCTTAAGCAGAAAGTGC
AGCTGGAAGAATTGGAGAAAGTGCTCAAAACAGAACAGGAGAAAATGCTGCAGCAAAATGAAAAACATGAGACTGTAGC
AGCAGAGTATAAGAAACTTCGTGATGAAAATGATAGGCTTGCTCATACACATGATCAACTCTTGAAAGAGAATGAAGTT
CTGCAAACTGATCATAAGAATTTGAAGACTTTGTTAAACAATTCCAAACTGGGACAAACACAATTAGAAGCTGAGTTCT
CTAAACTCAGAGAAGAGTACCAACTTCTGGATATTAAATGTACAAAAATAAGTAATCAGTGTGAGCTGCTTAGCCAGCT
TAAAGGAAATATGGAGGAGGAAAACAGACACCTGCTAGATCAAATTCAGACATTAATGCTACAGAATAGAACGTTACTT
GAGCAGAATATGGAAAGCAAGGATCTCTTCCATGTAGAGCAAAGACAGTACATCGACAAGCTAAATGAATTAAGGCGAC
AGAAGGAGAAATTGGAGGAGAAGATAATGGATCAGTATAAATTTTATGAGCCATCTCCACCTAGAAGAAGGGGCAACTG
GATTACACTGAAGATGAGGAAACTGATGAAATCCAAGAAGGATGTTAATCGAGAACGTCAGAAGTCTGCAAGCCTTACA
CCTACCCGTTCAGAATCCAGTGAAGGATTTCTTCAGCTGCCCCACCAGGACAGTCAGGATAGTTC
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 6
Unlabeled
 
7-12
stage 8
stage 9
stage 11
Anterior Intestinal Portal
Head Mesenchyme
Lateral Plate Mesoderm
Neural Plate/Tube
Primitive Streak
Somites
 
13-18
stage 18
Widespread Expression
 
19-24
stage 20
stage 22
stage 23
stage 23
stage 23
Foregut
Head Mesenchyme
Hindbrain
Leg Mesenchyme
Lung
Neural Plate/Tube
Pharyngeal Arches and Clefts
Sclerotome
Somatic Mesoderm
Spinal Ganglia and Nerves
Widespread Expression
Wing Mesenchyme
 
25-26
stage 26
stage 26
stage 26
stage 26
Foregut
Heart
Leg Mesenchyme
Lung
Pharyngeal Arches and Clefts
Sclerotome
Somatic Mesoderm
Spinal Cord
Spinal Ganglia and Nerves
Wing Mesenchyme
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.49565

Mouse

EmageMGI:1925177
EurexpressMGI:1925177
MGI GXDMGI:1925177

Frog

Xenbase5883976

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-100701-2, ZDB-GENE-100701-3
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