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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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CDH8
cadherin 8

Gene

Official Symbol	CDH8
Official Full Name	cadherin 8
CGNC ID	53126
also known as	cadherin-8, cadherin-8\|cadherin 8, type 2, Cadherin, CDH8
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_001100289
Polypeptide	NP_001093759

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	35071			FBgn0262018
Human	1006	ENSG00000150394		MIM:603008
Mouse	12564	ENSMUSG00000036510	All phenotypic alleles (4):Targeted, other(4)	MGI:107434
Xenopus	100486228			1002703
Zebrafish	564205	ENSDARG00000037478	ZDB-GENE-130530-597	ZFIN:ZDB-GENE-130530-597

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	427553
Ensembl Gene	ENSGALG00000005319
KEGG	gga:427553

Entry 1

GEISHA Id	CDH8.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	GCGTTATTAGAGTGAGAAAGCCCC
Reverse cDNA Template Primer	ATTAACCCTCACTAAAGGCCACCTCCTTCATCATCATAGCG	cDNA Template Length	1015
Forward cDNA Template Probe	show AATATTTTCTCTCACATCCTTCATCATCTTTGGATGGATTAAGGGGCTCATTCTTATGTCTTCTTAGTGTTACAAACAG CACCACAATGACTAGTAGCAAAATGATGCATGCTAATATTGCAATTAGGGCTCCCATGCTGAGTCCAATAGGAAGTACA TATGCTTCAACATTACAGGACTGGACAATACCGTCACTGCTGCAACCGCAGACTCTAATAGTAAGAGTGCTAGTACTGC TCATGGGAGGATTTCCACTATCACTTATTATGATTGGCAGTAGGTATACTTCTTGTTTCTGCCGACTGAATCCATTATG CTTTGCCAAAATGCTGAGAGTATTATCTTCATTTTTCTTGATAGTAAAATTTGGATTGTTGATCATTTCAGGAAGAAGA CTATACAAGAAATAATGCCCATTTTTAGGATCATCTTTGTCAACAGCACTGACAATCTGAATTACTTGTCCAGGCTTCC CATTCTCACATAAAAAGGCTTCATGCTCTGATGCAAACTCAGGAGCGTTGTCATTTACATCAAGAACTTTGATAGTAAC AGGCACCCGGGACACTTGACTGTGGTTCCTAGTTTCAGTAGCTACAATCGTTATATTGTGCCACATATTTGTTTCTCTG TCGAGTGGTGTTGCCAAAGTTATTTTTCCATCTTCTGCATTAATGTTGAACTGTCTCTCAAGGTCAGTATGACGATCAA TGGAAAACCTTATAGGACTGGAAGACACATCAGGGTCATGGGCTGTCACCTGACCAATCACAGAGTTAATAGCAGCATT TTCATGCACTTCCAGTAGGTATGTAGGTGATGAAAAGACTGGTGGCTCATCAGCATCCTCTACTACAATTTTTACTGTT GCTGTATCCTTGAAAGGTCCTCCACTGATGAAGCGAGGATCAATATGAATGTTGGCTGCTTCTACCTTCANAGTATAGG ATTTTTTGGTCTCAAGTCCAGGGGCTTTCTC

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 8

stage 9

stage 10

stage 11

Heart
Unlabeled

very faint

19-24

stage 20

Hindgut
Lung
Pharyngeal Arches and Clefts

25-26

stage 26

Foregut
Heart
Hindbrain
Hindgut
Leg Mesenchyme
Midbrain
Pharyngeal Arches and Clefts
Spinal Cord
Wing Mesenchyme

Entry 2

GEISHA Id	Cad8.Jiankai.2007	Data Source	Publication
Complete cDNA Template Probe	show AACAAACCTCTGGAGCCTCCTTCAGAATTCATTATAAAGGTTCAAGACATCAATGACAATGCCCCGGAGTTTGTTGATG GTCCTTATCATGCCACAGTTCCAGAGATGTCTGTTGTTGGCACCTTTGTTACTAAAGTAACAGCTACAGATGCGGATGA TCCAGTTTATGGAAACAGTGCCAAGCTGGTTTATAGCATTCTGGAAGGACAGCCTTACTTTTCCATTGAACCACATACA GCTATAATTAAAACAGCTCTTCCCAACATGGACAGAGAAGCCAAAGAAGAATATTTTGTGGTTATCCAGGCAAAGGACA TGGGAGGACATATGGGTGGACTTTCTGGAACTACAACGGTGACAATTACACTCACTGATGTTAATGACAATCCTCCTAA GTTTGCGCAGAGTCTGTATCACTTCTCAGTAATGGAAGATGTTGCTCTTGGTGAACCTATAGGAAGGGTGAAAGCAAAT GACCTGGATATTGGAGAAAACGCTAAATCATCATATGATATTATTGAAGGAGATGGAATGGATATATTTGAAATCACTA CAGATGCCCAAACTCAGGATGGCGTTATTAGAGTGAGAAAGCCCCTGGACTTTGAGACCAAAAAATCCTATACTCTGAA GGTAGAAGCAGCCAACATTCATATTGATCCTCGCTTCATCAGTGGAGGACCTTTCAAGGATACAGCAACAGTAAAAATT GTAGTAGAGGATGCTGATGAGCCACCAGTCTTTTCATCACCTACATACCTACTGGAAGTGCATGAAAATGCTGCTATTA ACTCTGTGATTGGTCAGGTGACAGCCCATGACCCTGATGTGTCTTCCAGTCCTATAAGGTTTTCCATTGATCGTCATAC TGACCTTGAGAGACAGTTCAACATTAATGCAGAAGATGGAAAAATAACTTTGGCAACACCACTCGACAGAGAAACAAAT ATGTGGCACAATATAACGATTGTAGCTACTGAAACTAGGAACCACAGTCAAGTGTCCCGGGTGCCTGTTACTATCAAAG TTCTTGATGTAAATGACAACGCTCCTGAGTTTGCATCAGAGCATGAAGCCTTTTTATGTGAGAATGGGAAGCCTGGACA AGTAATTCAGATTGTCAGTGCTGTTGACAAAGATGATCCTAAAAATGGGCATTATTTCTTGTATAGTCTTCTTCCTGAA ATGATCAACAATCCAAATTTTACTATCAAGAAAAATGAGGATAATACTCTCAGCATTTTGGCAAAGCATAATGGATTCA GTCGGCAGAAACAAGAAGTATACCTACTGCCAATCATAATAAGTGATAGTGGAAATCCTCCCATGAGCAGTACTAGCAC TCTTACTATTAGAGTCTGCGGTTGCAGCAGTGACGGTATTGTCCAGTCCTGTAATGTTGAAGCATATGTACTTCCTATT GGACTCAGCATGGGAGCCCTAATTGCAATATTAGCATGCATCATTTTGCTACTAGTCATTGTGGTGCTGTTTGTAACAC TAAGAAGACATAAGAATGAGCCCTTAATCATCAAAGATGATGAAGATGTGAGAGAAAACATTATTCGCTATGATGATGA AGGAGGTGGAGAAGAAGATACAGAAGCTTTTGACATTGCAACGTTGCAAAATCCAGATGGAATTAATGGATTTTTGCCT CGTAAGGATATTAAACCTGATCTTCAATTTATGCCCAGGCAGGGTCTTGCACCTGTTCCTAATGGTGTTGATGTTGATG AATTTATTAATGTAAGGCTTCATGAAGCCGATAACGATCCCACAGCTCCACCATATGA
Citation	Luo J, Wang H, Lin J, Redies C. Cadherin expression in the developing chicken cochlea. Dev Dyn. 2007 Aug;236(8):2331-7.
Copyright	Copyright © 2007 Wiley-Liss, Inc.
Comments	Authors said: RT-PCR fragments encoding chicken Cad8 ... were used as templates for the in vitro synthesis of cRNA probes. The accession number given in the paper is EF608154. Primers used to make the probe were 5-aacaaacctctggagcctc-3 5-cggaattctcrtanggnggngcngt-3. The probe listed was excerpted from the whole cDNA using these primer sequences.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

31-44

stage 37

stage 40

stage 44

Ear/Otic Placcode

Entry 3

GEISHA Id	CDH8.Abellan.2009	Data Source	Publication
Complete cDNA Template Probe	show CATAATGGATTCAGTCGGCAGAAACAAGAAGTATACCTACTGCCAATCATAATAAGTGATAGTGGAAATCCTCCCATGA GCAGTACTAGCACTCTTACTATTAGAGTCTGCGGTTGCAGCAGTGACGGTATTGTCCAGTCCTGTAATGTTGAAGCATA TGTACTTCCTATTGGACTCAGCATGGGAGCCCTAATTGCAATATTAGCATGCATCATTTTGCTACTAGTCATTGTGGTG CTGTTTGTAACACTAAGAAGACATAAGAATGAGCCCTTAATCATCAAAGATGATGAAGATGTGAGAGAAAACATTATTC GCTATGATGATGAAGGAGGTGGAGAAGAAGATACAGAAGCTTTTGACATTGCAACGTTGCAAAATCCAGATGGAATTAA TGGATTTTTGCCTCGTAAGGATATTAAACCTGATCTTCAATTTATGCCCAGGCAGGGTCTTGCACCTGTTCCTAATGGT GTTGATGTTGATGAATTTATTAATGTAAGGCTTCATGAAGCCGATAACGATCCCACAGCTCCACCATATGACTCTATCC AGATTTATGGCTATGAAGGAAGAGGCTCAGCTGCTGGTTCCCTTAGTTCATTGGAGTCCTCTGCATCAGACTCAGATCA GAATTTTGACTACCTCAGTGAATGGGGTCCTCGCTTTAAAAGACTTGGAGAACTTTACTCAGTTG
Citation	Abellán A, Legaz I, Vernier B, Rétaux S, Medina L. Olfactory and amygdalar structures of the chicken ventral pallium based on the combinatorial expression patterns of LIM and other developmental regulatory genes. J Comp Neurol. 2009 Sep 20;516(3):166-86.
Copyright	Copyright © 2009 Wiley-Liss, Inc.
Comments	The sequence below was obtained from NCBI (acc # EF608154.1) - Showing 697 bp region from base 2197 to 2893 using the information provided in the publication.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

31-42

stage 38

stage 42

Telencephalon

frontal section
oblique horizontal section
oblique horizontal section
oblique horizontal section

Entry 4

GEISHA Id	CDH8.Neudert.2008	Data Source	Publication
Complete cDNA Template Probe	show ACAGTTACATTTGGCAGGCAGGCACGTTGGAGCGCTCAGACCCGGAATTAGTGGATTTATGTGGAATATCCCCGCTTTC ACGGAGACGTGCTGCTGCCACTGGCTTGTGCAAAGGGAGAAATTAATAACTGCACTTGAGCATGCAGGCACAGAAACCC GAGAAGCAAAATAACCGGCATCTCCTCCAGCATCAAAAAGCATGAGAAGAAAATCGGGAGAATCCTGCCTGTTCACAGG GACTGGCGAATGGTTGTTTTACCTCACCCTTTCAATCCGCGTGTGAAGAGGCTGCCAGCAGGCTGTTTCCTTGGTCCTT GAAAGAGAATCCTTAATGACTGGAAAACTCAATGGATCATGTTTTTATAATCTAAGCTATTTTACGTTGACTGTGCTGT AAACACATGGAGGAGCTGTAAGTAAATGTTCTGTACTGCATGATGAATTGGATTGCTACAGTCTGGAGGAAAGCAAAAT AATAATTTCATTTCTGTGGTGATTTGCGTAGCTTGTGGTACAATGCCAGAAAGACTAACGGAAATGCTTATGGATACAT GGACTCCATTAATAATATTATGGATTACTGTACTTCCTTCCATTTATATGGCTCCAATGAATCAATCTCAAGTACTACC AAGTGGATCCAGTACAGGACTAAAAAGGCTAACTGAAGAACAAAGAATTTTGAACCGTTCCAAGAGAGGCTGGGTTTGG AATCAAATGTTTGTATTAGAAGAATTTTCTGGACCTGAACCAATACTAGTTGGCCGGTTACATACAGACTTGGATCCTG GCAGCAGCAAAATCAAGTATATTCTGTCAGGAGATGGTGCTGGAACTATCTTTGTGATCAATGACAAGACTGGAGACAT TCATGCAATGAAAAGGCTTGACCGCGAGGAAAAAGCTGAGTACACTCTAACAGCTCAAGCAGTTGACAGGGACACAAAC AAACCTCTGGAGCCTCCTTCAGAATTCATTATAAAGGTTCAAGACATCAATGACAATGCCCCGGAGTTTGTTGATGGTC CTTATCATGCCACAGTTCCAGAGATGTCTGTTGTTGGCACCTTTGTTACTAAAGTAACAGCTACAGATGCGGATGATCC AGTTTATGGAAACAGTGCCAAGCTGGTTTATAGCATTCTGGAAGGACAGCCTTACTTTTCCATTGAACCACATACAGCT ATAATTAAAACAGCTCTTCCCAACATGGACAGAGAAGCCAAAGAAGAATATTTTGTGGTTATCCAGGCAAAGGACATGG GAGGACATATGGGTGGACTTTCTGGAACTACAACGGTGACAATTACACTCACTGATGTTAATGACAATCCTCCTAAGTT TGCGCAGAGTCTGTATCACTTCTCAGTAATGGAAGATGTTGCTCTTGGTGAACCTATAGGAAGGGTGAAAGCAAATGAC CTGGATATTGGAGAAAACGCTAAATCATCATATGATATTATTGAAGGAGATGGAATGGATATATTTGAAATCACTACAG ATGCCCAAACTCAGGATGGCGTTATTAGAGTGAGAAAGCCCCTGGACTTTGAGACCAAAAAATCCTATACTCTGAAGGT AGAAGCAGCCAACATTCATATTGATCCTCGCTTCATCAGTGGAGGACCTTTCAAGGATACAGCAACAGTAAAAATTGTA GTAGAGGATGCTGATGAGCCACCAGTCTTTTCATCACCTACATACCTACTGGAAGTGCATGAAAATGCTGCTATTAACT CTGTGATTGGTCAGGTGACAGCCCATGACCCTGATGTGTCTTCCAGTCCTATAAGGTTTTCCATTGATCGTCATACTGA CCTTGAGAGACAGTTCAACATTAATGCAGAAGATGGAAAAATAACTTTGGCAACACCACTCGACAGAGAAACAAATATG TGGCACAATATAACGATTGTAGCTACTGAAACTAGGAACCACAGTCAAGTGTCCCGGGTGCCTGTTACTATCAAAGTTC TTGATGTAAATGACAACGCTCCTGAGTTTGCATCAGAGCATGAAGCCTTTTTATGTGAGAATGGGAAGCCTGGACAAGT AATTCAGATTGTCAGTGCTGTTGACAAAGATGATCCTAAAAATGGGCATTATTTCTTGTATAGTCTTCTTCCTGAAATG ATCAACAATCCAAATTTTACTATCAAGAAAAATGAGGATAATACTCTCAGCATTTTGGCAAAGCATAATGGATTCAGTC GGCAGAAACAAGAAGTATACCTACTGCCAATCATAATAAGTGATAGTGGAAATCCTCCCATGAGCAGTACTAGCACTCT TACTATTAGAGTCTGCGGTTGCAGCAGTGACGGTATTGTCCAGTCCTGTAATGTTGAAGCATATGTACTTCCTATTGGA CTCAGCATGGGAGCCCTAATTGCAATATTAGCATGCATCATTTTGCTACTAGTCATTGTGGTGCTGTTTGTAACACTAA GAAGACATAAGAATGAGCCCTTAATCATCAAAGATGATGAAGATGTGAGAGAAAACATTATTCGCTATGATGATGAAGG AGGTGGAGAAGAAGATACAGAAGCTTTTGACATTGCAACGTTGCAAAATCCAGATGGAATTAATGGATTTTTGCCTCGT AAGGATATTAAACCTGATCTTCAATTTATGCCCAGGCAGGGTCTTGCACCTGTTCCTAATGGTGTTGATGTTGATGAAT TTATTAATGTAAGGCTTCATGAAGCCGATAACGATCCCACAGCTCCACCATATGACTCTATCCAGATTTATGGCTATGA AGGAAGAGGCTCAGCTGCTGGTTCCCTTAGTTCATTGGAGTCCTCTGCATCAGACTCAGATCAGAATTTTGACTACCTC AGTGAATGGGGTCCTCGCTTTAAAAGACTTGGAGAACTTTACTCAGTTGGAGAAAGTGACAAAGAAACTTGACAGTGGA TTACAAACTTTTTCACTGTTGACTTAACGATCATGTATTATTCTAGGGCCACTGCTGTTAGTTAAAACTAATGTGGCTT TTTGTTTTAGAGGCAAGTTTAGCGCCAGTCATCTATAAAATCAACTACATTGTAATGTTGAACCAAATAAAAAAGTATA TGTTAGGAGGTTAAGTCTTGTGGAGTGTGAAGTAAAGTATGTGGAGTGTCTAGAAGTCTTTGGATATTTGATATTCACT TGACCACTCTGAAGATGGAGATTTAGATCTTTAATTATCTTCAGTGAATTGAAAAGAATGAATTGGTGCTTTCTTAGGA AATGGACTTGCAGGGATTTTGCTGTTGAACAGTAGCTCCTGCCAGTGTATGTAAAGCTAATGGTTTGTTTTTGCATTGC CAACAAAGATCCCAACACAGAAATGTTAAAAGCAATATCTTGGTCTTCTTAGCAATGCTGAATAGAAATAGCATTGTAA ATCCTTACTGGCTTTTACTGTGCAGTGACCATACATTGTACATACAGTAATTGTTGGCCACGTAACCACAGACTGAATA TCATCTTTAAATATTGTGTCAAGCCTTAAAATATTCACATGTTCTTAATCCATTCCAGTTATGGGTAACAAATCCTACT CATGTGCAAAGATTCGGATGCAGGGGTCCAAAACCTTGCTTTACAAAAAGATATTTTTTCTAAATGAAGGGTCAATCTG GTACTTCTGAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAA
Citation	Neudert F, Redies C. Neural circuits revealed by axon tracing and mapping cadherin expression in the embryonic chicken cerebellum. J Comp Neurol. 2008 Jul 20;509(3):283-301. doi: 10.1002/cne.21743.
Copyright	Copyright © 19992013 John Wiley & Sons, Inc. All Rights Reserved.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_001100289.1