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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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CDK7
cyclin dependent kinase 7

Gene

Official Symbol	CDK7
Official Full Name	cyclin dependent kinase 7
CGNC ID	10969
also known as	cyclin-dependent kinase 7
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	XM_001234586
Polypeptide	XP_001234587

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	771294
Ensembl Gene	ENSGALG00000014790
KEGG	gga:771294

Entry 1

GEISHA Id	ChEST582c23	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GGGACAGATCGTGGCTATCAAAAAGATTAAACTGGGCCATCGATCAGAAGCTAAAGATGGAATCAACAGAACAGCTCTC AGAGAGATAAAGTTGTTACAGGAGCTAAGCCATCCAAATGTTATGGTCTTTTAGATGCGTTGGACACAAATCTAATATT AGCTTGGTGTTTGATTTCATGGAAACAGACCTTGAGGTTATTATAAAGGATACTAGTATTGTGTTGACACAATCTCACA TCAAAGCATATATGCTGATGACGCTTCAAGNGTTTAGAGTATTTACATCAACAGTGGATTCTACACAGGGATCTTAAAC CAAATAATTGTTGTTAGATGGAAATGGTGTTTTGAAATTGGCTGACTTTGGCTTGGCAAAATCTTTTGGAAGCCCAAAC AGAGTTTACACGCACCAAGTAGTAACAAGATGGTACCGATCCCCAGAACTACTGTTTGGTGCTAGAATGTATGGTGTCG GTGTTGATATGTGGGCTGTTGGTTGTATTCTAGCTGAGTTACTTCTCAGGGTTCCTTTTTTGCCAGGAGACTCTGATCT TGACCAGTTGACAAGGATTTTTGAAACACTGGGCACTCCAACAGAAGAACAGTGGCCTGGAATGACAAACCTCCCGGAT TACGTCACGTTTAAGTCTTTCCCTGGAATGCCTCTTCAACATATCTTCAGTGCAGCTGGTGAT

Stage

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Location (click to highlight)

Comments (click to highlight)

13-18

stage 15

stage 16

19-24

stage 20

stage 24

Head Mesenchyme
Hindbrain
Midbrain
Neural Plate/Tube

Sections pending.

stage 25

Head Mesenchyme
Hindbrain
Midbrain

Sections pending.

Entry 2

GEISHA Id	CDK7.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	5'-GTTCTTCTCGCCTTTTCCGC-3'
Reverse cDNA Template Primer	5'-AATTAACCCTCACTAAAGGAGCACAGTTTGGTCTGGGTAGCAG-3'	cDNA Template Length	962
Complete cDNA Template Probe	show GTTCTTCTCGCCTTTTCCGCTCGGCAGCCATGGATGCGCGGGCTCGTGCCAAGCGCTACGAGAAACTCGACTTCTTGGG GGAGGGGCAGTTTGCTACTGTGTATAAGGCAAAGGACAAGAACACGGGACAGATCGTGGCTATCAAAAAGATTAAACTG GGCCATCGATCAGAAGCTAAAGATGGAATCAACAGAACAGCTCTCAGAGAGATAAAGTTGTTACAGGAGCTAAGCCATC CAAATGTTATTGGTCTTTTAGATGCGTTTGGACACAAATCTAATATTAGCTTGGTGTTTGATTTCATGGAAACAGACCT TGAGGTTATTATAAAGGATACTAGTATTGTGTTGACACAATCTCACATCAAAGCATATATGCTGATGACGCTTCAAGGT TTAGAGTATTTACATCAACAGTGGATTCTACACAGGGATCTTAAACCAAATAATTTGTTGTTAGATGGAAATGGTGTTT TGAAATTGGCTGACTTTGGCTTGGCAAAATCTTTTGGAAGCCCAAACAGAGTTTACACGCACCAAGTAGTAACAAGATG GTACCGATCCCCAGAACTACTGTTTGGTGCTAGAATGTATGGTGTCGGTGTTGATATGTGGGCTGTTGGTTGTATTCTA GCTGAGTTACTTCTCAGGGTTCCTTTTTTGCCAGGAGACTCTGATCTTGACCAGTTGACAAGGATTTTTGAAACACTGG GCACTCCAACAGAAGAACAGTGGCCTGGAATGACAAACCTTCCGGATTACGTCACGTTTAAGTCTTTCCCTGGAATGCC TCTTCAACATATCTTCAGTGCAGCTGGTGATGATTTACTTAGTCTTCTACAAGGATTATTTACATTTAATCCTTGTTCT AGAGTTACAGCCACTCAGGCATTAAAACAGAAGTATTTCAGTAATCGACCAGGACCCACTCCAGGAGATCTGCTACCCA GACCAAACTGTGCT

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 6

Epiblast
Unlabeled

7-12

stage 8

stage 10

Extraembryonic Mesoderm
Head Mesenchyme
Neural Plate/Tube
extraembryonic mesoderm

13-18

stage 16

stage 17

Foregut
Head Mesenchyme
Myotome
Pharyngeal Arches and Clefts
Sclerotome
Sinus Venosus
Somites
Unlabeled

19-24

stage 22

stage 23

Foregut
Head Mesenchyme
Leg Mesenchyme
Liver
Lung
Mesonephros
Neural Plate/Tube
Pharyngeal Arches and Clefts
Sclerotome
Somatic Mesoderm
Wing Mesenchyme

25-26

stage 26

Foregut
Head Mesenchyme
Leg Mesenchyme
Liver
Pharyngeal Arches and Clefts
Sclerotome
Somatic Mesoderm
Spinal Cord
Spinal Ganglia and Nerves
Wing Mesenchyme

Entry 3

GEISHA Id	CDK7.Robb.2012	Data Source	Publication
Complete cDNA Template Probe	show GCCGCGCGGTGACGTCACGGCTGCCAGCGGCAGGGCAGGCCGGCGGGCCGGGAGCGGCGCGGGGAGCGGGCGCTGATAG AGCTCCGTCGCGACTCTTCCGCTGCGTGTCTCGTCACTCCGGCCTTGAGTTCTTCTCGCCTTTTCCGCTCGGCAGCCAT GGATGCGCGGGCTCGTGCCAAGCGCTACGAGAAACTCGACTTCTTGGGGGAGGGGCAGTTTGCTACTGTGTATAAGGCA AAGGACAAGAACACGGGACAGATCGTGGCTATCAAAAAGATTAAACTGGGCCATCGATCAGAAGCTAAAGATGGAATCA ACAGAACAGCTCTCAGAGAGATAAAGTTGTTACAGGAGCTAAGCCATCCAAATGTTATTGGTCTTTTAGATGCGTTTGG ACACAAATCTAATATTAGCTTGGTGTTTGATTTCATGGAAACAGACCTTGAGGTTATTATAAAGGATACTAGTATTGTG TTGACACAATCTCACATCAAAGCATATATGCTGATGACGCTTCAAGGTTTAGAGTATTTACATCAACAGTGGATTCTAC ACAGGGATCTTAAACCAAATAATTTGTTGTTAGATGGAAATGGTGTTTTGAAATTGGCTGACTTTGGCTTGGCAAAATC TTTTGGAAGCCCAAACAGAGTTTACACGCACCAAGTAGTAACAAGATGGTACCGATCCCCAGAACTACTGTTTGGTGCT AGAATGTATGGTGTCGGTGTTGATATGTGGGCTGTTGGTTGTATTCTAGCTGAGTTACTTCTCAGGGTTCCTTTTTTGC CAGGAGACTCTGATCTTGACCAGTTGACAAGGATTTTTGAAACACTGGGCACTCCAACAGAAGAACAGTGGCCTGGAAT GACAAACCTTCCGGATTACGTCACGTTTAAGTCTTTCCCTGGAATGCCTCTTCAACATATCTTCAGTGCAGCTGGTGAT GATTTACTTAGTCTTCTACAAGGATTATTTACATTTAATCCTTGTTCTAGAGTTACAGCCACTCAGGCATTAAAACAGA AGTATTTCAGTAATCGACCAGGACCCACTCCAGGAGATCTGCTACCCAGACCAAACTGTGCTGCGGAAGCTGTAAAGGA GCAACAACACACACTTTTGAATTTAAAAAGGAAACGACCAGAGGGAATAGAACAAGGATTACCAAAAAAATTGATTTTT TGATCGCCATGGATGGTGGATGAAAATGAGAATTCAAATGACGTGAGTCCCAACCTTGAAAAACGCTGGATGGTTATTC TTAGATTATATTAATATGTAAAATGGTAATATAATATTTTATTAAGAAAAGTGAAGTTTTTAATTTTTTTTTTTTAAAT AAAATACTGCTTAAAA
Citation	Robb EA, Antin PB, Delany ME. Defining the Sequence Elements and Candidate Genes for the Coloboma Mutation. PLoS One. 2013; 8(4): e60267.
Copyright	This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI XM_001234586.3