Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

NTM
neurotrimin

Gene

Official Symbol	NTM
Official Full Name	neurotrimin
CGNC ID	49326
also known as	CEPU, CEPU-SE, HNT, protein CEPU-1\|CEPU-Se alpha 1 isoform\|CEPU-Se alpha 2 isoform\|IgLON family protein\|neural secreted glycoprotein, CEPU-1 precursor
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_204711
Polypeptide	NP_990042
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.243

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	7354433			FBgn0259714
Human	50863	ENSG00000182667		MIM:607938
Mouse	235106	ENSMUSG00000059974	All phenotypic alleles (2):Targeted, knock-out(1) Targeted, other(1)	MGI:2446259
Xenopus	100492453, 444598			6045424
Zebrafish

Gene Ontology

Molecular Function
Biological Process	cell adhesion
Cellular Component	anchored component of membrane, plasma membrane

Links to other databases

Entrez Gene	395450
Ensembl Gene	ENSGALG00000001437
KEGG	gga:395450

Entry 1

GEISHA Id	CEPU-1.Badde.2005	Data Source	Publication
Complete cDNA Template Probe	show TTCGCTCCGGGAAACGCTGGATTTTAAACCTCTCCCTGGCAGCAGGCAGTGAGTGGGGGAAGGAGGGGGAGGCACGCAG CTCCGAATATGGCCCAGGCGAAAATGCAGCACCCCGTCTCATGGGTGATCTTCGCCGGGATGGCCGCACTCCTCCTCTT CCAAGGAGTGCCCGTGCGCAGCGGAGATGCCACCTTCCCCAAAGCTATGGACAACGTGACTGTGCGGCAAGGGGAGAGT GCCACGCTCAGGTGCTCCGTGGACAACCGCGTCACCCGCGTGGCCTGGCTGAACCGCAGCAGCATCCTCTATGCCGGCA ATGACAAGTGGTGCTTGGACCCGAGGGTGGTGCTCCTGGCCAACACCAAAACCCAGTACAGCATCCAGATCCACGACGT GGACGTGTACGATGAAGGGCCCTACACCTGCTCCGTGCAGACAGACAATCACCCCAAGACATCTCGCGTGCACCTCATT GTGCAAGTGTCGCCGAAAATTACCGAGACCTCTTCTGACATCTCCATCAATGAAGGTGGCAACGTCAGCCTCACCTGCA TAGCCACGGGCAGGCCAGACCCCACAATCACCTGGAGACACATCTCGCCCAAAGCTGTGGGCTTCATCAGCGAGGACGA GTACCTGGAGATCACAGGCATCACGAGGGAGCAGTCGGGCGAGTACGAGTGCAGTGCCTCCAACGACGTGGCCGCGCCT GTCGTCCAGCGAGTCAAAGTCACCGTCAACTACCCACCGTACATTTCGGATGCGAAGAGCACCGGTGTGCCGGTGGGGC AGAAGGGCATCCTGATGTGTGAAGCCTCCGCTGTGCCCTCCGCTGACTTCCAGTGGTACAAAGACGACAAGCGGCTGGC TGAAGGACAGAAAGGGCTGAAGGTGGAAAACAAAGCCTTCTTCTCCCGACTGACTTTCTTCAACGTCTCCGAGCAGGAC TACGGCAACTACACCTGCGTGGCCTCCAACCAGCTAGGAAACACCAACGCCAGCATGATCCTTTATGAAGAGACAACAA CCGCTCTGACACCCTGGAAAGGCCCCGGTGCAGTGCACGATGGCAACAGCGGTGCGTGGCGGCGAGGCAGCTGTGCCTG GCTGCTGGCCCTGCCGCTCGCCCAGCTCGCCCGCCAGTTCTGAGCCCCGAGGCGGCCACGACCACCACAGCAGAAAGGA GAGGAAGAAGATGTATTCACTGTTTCTGAAAATAATCATAAGAATTGAGAGAGTTGTCCGGCCAGGCCTTCT
Citation	Badde A, Bumsted-O'Brien KM, Schulte D. Chick receptor protein tyrosine phosphatase lambda/psi (cRPTPlambda/cRPTPpsi) is dynamically expressed at the midbrain-hindbrain boundary and in the embryonic neural retina. Gene Expr Patterns. 2005 Aug;5(6):786-91.
Copyright	Copyright © 2005 Elsevier B.V. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204711).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 11

Hindbrain
Isthmus/MHB
Midbrain

13-15

stage 15

Cranial Ganglia
Isthmus/MHB
Pharyngeal Arches and Clefts

Entry 2

GEISHA Id	NTM.Song.2011	Data Source	Publication
Complete cDNA Template Probe	show TTCGCTCCGGGAAACGCTGGATTTTAAACCTCTCCCTGGCAGCAGGCAGTGAGTGGGGGAAGGAGGGGGAGGCACGCAG CTCCGAATATGGCCCAGGCGAAAATGCAGCACCCCGTCTCATGGGTGATCTTCGCCGGGATGGCCGCACTCCTCCTCTT CCAAGGAGTGCCCGTGCGCAGCGGAGATGCCACCTTCCCCAAAGCTATGGACAACGTGACTGTGCGGCAAGGGGAGAGT GCCACGCTCAGGTGCTCCGTGGACAACCGCGTCACCCGCGTGGCCTGGCTGAACCGCAGCAGCATCCTCTATGCCGGCA ATGACAAGTGGTGCTTGGACCCGAGGGTGGTGCTCCTGGCCAACACCAAAACCCAGTACAGCATCCAGATCCACGACGT GGACGTGTACGATGAAGGGCCCTACACCTGCTCCGTGCAGACAGACAATCACCCCAAGACATCTCGCGTGCACCTCATT GTGCAAGTGTCGCCGAAAATTACCGAGACCTCTTCTGACATCTCCATCAATGAAGGTGGCAACGTCAGCCTCACCTGCA TAGCCACGGGCAGGCCAGACCCCACAATCACCTGGAGACACATCTCGCCCAAAGCTGTGGGCTTCATCAGCGAGGACGA GTACCTGGAGATCACAGGCATCACGAGGGAGCAGTCGGGCGAGTACGAGTGCAGTGCCTCCAACGACGTGGCCGCGCCT GTCGTCCAGCGAGTCAAAGTCACCGTCAACTACCCACCGTACATTTCGGATGCGAAGAGCACCGGTGTGCCGGTGGGGC AGAAGGGCATCCTGATGTGTGAAGCCTCCGCTGTGCCCTCCGCTGACTTCCAGTGGTACAAAGACGACAAGCGGCTGGC TGAAGGACAGAAAGGGCTGAAGGTGGAAAACAAAGCCTTCTTCTCCCGACTGACTTTCTTCAACGTCTCCGAGCAGGAC TACGGCAACTACACCTGCGTGGCCTCCAACCAGCTAGGAAACACCAACGCCAGCATGATCCTTTATGAAGAGACAACAA CCGCTCTGACACCCTGGAAAGGCCCCGGTGCAGTGCACGATGGCAACAGCGGTGCGTGGCGGCGAGGCAGCTGTGCCTG GCTGCTGGCCCTGCCGCTCGCCCAGCTCGCCCGCCAGTTCTGAGCCCCGAGGCGGCCACGACCACCACAGCAGAAAGGA GAGGAAGAAGATGTATTCACTGTTTCTGAAAATAATCATAAGAATTGAGAGAGTTGTCCGGCCAGGCCTTCT
Citation	Song G, Seo HW, Choi JW, Rengaraj D, Kim TM, Lee BR, Kim YM, Yun TW, Jeong JW, Han JY. Discovery of candidate genes and pathways regulating oviduct development in chickens. Biol Reprod. 2011 Aug;85(2):306-14. Epub 2011 May 4.
Copyright	Copyright © 2012 by the Biology of Reproduction
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204711.1).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

31-44

stage 44

Ovary

17 days post-hatch
37 days post-hatch
control embryo (untreated)

Entry 3

GEISHA Id	CEPU-1.Jungbluth.2001	Data Source	Publication
Complete cDNA Template Probe	show TTCGCTCCGGGAAACGCTGGATTTTAAACCTCTCCCTGGCAGCAGGCAGTGAGTGGGGGAAGGAGGGGGAGGCACGCAG CTCCGAATATGGCCCAGGCGAAAATGCAGCACCCCGTCTCATGGGTGATCTTCGCCGGGATGGCCGCACTCCTCCTCTT CCAAGGAGTGCCCGTGCGCAGCGGAGATGCCACCTTCCCCAAAGCTATGGACAACGTGACTGTGCGGCAAGGGGAGAGT GCCACGCTCAGGTGCTCCGTGGACAACCGCGTCACCCGCGTGGCCTGGCTGAACCGCAGCAGCATCCTCTATGCCGGCA ATGACAAGTGGTGCTTGGACCCGAGGGTGGTGCTCCTGGCCAACACCAAAACCCAGTACAGCATCCAGATCCACGACGT GGACGTGTACGATGAAGGGCCCTACACCTGCTCCGTGCAGACAGACAATCACCCCAAGACATCTCGCGTGCACCTCATT GTGCAAGTGTCGCCGAAAATTACCGAGACCTCTTCTGACATCTCCATCAATGAAGGTGGCAACGTCAGCCTCACCTGCA TAGCCACGGGCAGGCCAGACCCCACAATCACCTGGAGACACATCTCGCCCAAAGCTGTGGGCTTCATCAGCGAGGACGA GTACCTGGAGATCACAGGCATCACGAGGGAGCAGTCGGGCGAGTACGAGTGCAGTGCCTCCAACGACGTGGCCGCGCCT GTCGTCCAGCGAGTCAAAGTCACCGTCAACTACCCACCGTACATTTCGGATGCGAAGAGCACCGGTGTGCCGGTGGGGC AGAAGGGCATCCTGATGTGTGAAGCCTCCGCTGTGCCCTCCGCTGACTTCCAGTGGTACAAAGACGACAAGCGGCTGGC TGAAGGACAGAAAGGGCTGAAGGTGGAAAACAAAGCCTTCTTCTCCCGACTGACTTTCTTCAACGTCTCCGAGCAGGAC TACGGCAACTACACCTGCGTGGCCTCCAACCAGCTAGGAAACACCAACGCCAGCATGATCCTTTATGAAGAGACAACAA CCGCTCTGACACCCTGGAAAGGCCCCGGTGCAGTGCACGATGGCAACAGCGGTGCGTGGCGGCGAGGCAGCTGTGCCTG GCTGCTGGCCCTGCCGCTCGCCCAGCTCGCCCGCCAGTTCTGAGCCCCGAGGCGGCCACGACCACCACAGCAGAAAGGA GAGGAAGAAGATGTATTCACTGTTTCTGAAAATAATCATAAGAATTGAGAGAGTTGTCCGGCCAGGCCTTCT
Citation	Stefan Jungbluth, Chris Phelps, Andrew Lumsden. CEPU-1 expression in the early embryonic chick brain. Mech Dev. 2001 Mar;101(1-2):195-7.
Copyright	Copyright © 2001 Elsevier Science Ireland Ltd.
Comments	Authors indicated the probe was synthesized by PCR with full length fragment of CEPU-1, the sequence above was obtained from NCBI (accession # NM_204711.1).