GEISHA - A Chicken Embryo Gene Expression Database
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CHGA
chromogranin A

Gene
Official SymbolCHGA
Official Full Namechromogranin A
CGNC ID8222
also known aschromogranin-A|chromogranin A (parathyroid secretory protein 1)
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
Gallus-Browse
Sequence Information
Genomic
RNAXM_421330
PolypeptideXP_421330
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST Profile
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human1113ENSG00000100604MIM:118910
Mouse12652ENSMUSG00000021194All phenotypic alleles (4):Targeted, knock-out(2) Targeted, other(2) MGI:88394
Xenopus493296, 495018960410
Zebrafish450039ENSDARG00000008829ZDB-GENE-041010-161ZFIN:ZDB-GENE-041010-161
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene423420
Ensembl GeneENSGALG00000010820
KEGGgga:423420

Entry 1

GEISHA IdCHGA.Ratie.2013Data SourcePublication
Complete cDNA Template Probeshow
CAGGAATGAAGCCAGTTTACTGCATTTCTCTTGCCTTCAAGACACCATTTTTGCCTTAATAATGCAGAGGAGTGTTGCC
CAAAAGTTACCCACTAGCATCCAGGAGGGTGTCATGTTGGTTGAAAGTGAAGTTAAATGTGTTGGCTCTGAGCAAGGAG
AGAGCACCTGCCCCTCTTGCCATCATCTGCTTTTGGGGAAGGTCTCTTCCCCCCAAAAGGCTGCTCCCTCCTAGCCCAG
AGCCCTTACAGCAGCTCTGGGAGCACCTCATCCTTCTTGGTCAAAAGCAGTGTGAGTTGTATGGAGGAGGTCTACCCTG
CTGCTCCTGGAAAACTGGGACTGAATGGCCCAAATACCTCCATGTGTGCAGGCAAGGACTGAGGCAACACTCCCATATC
TTCCCATTGCAGTAGGCAGTGAAATAGGCAGGTGGCATGGCTCCAGTCATGCTTCCCACCCCTATCACCTCCCTGTTGC
CCCATTTCTGCTCTCGTTGCAGGACCAGGAGCTGGAGAGCCTGGCCGCCATTGAGGCTGAGCTGGAGCGCGTGGCCCAC
AAGCTGCACGAGCTGAGGCGGGGCTGAGGGCTGGCTGCAGCCTCTCTCCACCATGGTCTCCTTTCCTGGTCTCATGCCG
AGTACGATGAGCAGAAGCACCACGCCTTGGACGCCGGCCCCACGGGCGCCAGGCCCGCCTCCCTCGCAGTAGTGTTGTG
CCCATCACTGCTTCTTGCCCCCACGCTCCTCTGTCCACCTGCCCCATCGGGCCACCGTAGCCAAGAAGTGTGACCTACA
CCTGTATTTTCTCTCTTTTCTTTATTTTTCTTTCCTCCCTCCCCTTCTGTTTTTTAAAAGGCAGGAGAGCTCTCTAAGA
AGTTCTCCTCCCACTGGTAGTTTCACTGGGTAAAACTGCAATAACTTGTTACCTTTTGATTAAAAGCTGAGAACTCTGA
CTGTAATATATTCTATATAAAAAATTTATCTAAGGAAAAATAG
CitationLeslie Ratié, Michelle Ware, Frédérique Barloy-Hubler, Hélène Romé, Isabelle Gicquel, Christèle Dubourg, Véronique David and Valérie Dupé. Novel genes upregulated when NOTCH signalling is disrupted during hypothalamic development. Neural Dev. 2013 Dec 23;8:25. doi: 10.1186/1749-8104-8-25.
Copyright© 2013 Ratié et al.; licensee BioMed Central Ltd.
CommentsThe sequence below was obtained from NCBI (acc # CR523039.1) using the information provided in the publication as described in Ratie et al.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-15
stage 15
stage 15
stage 15
stage 15
Hypothalamus
Mesencephalon
Nasal Placode/Nerve
Peripheral Nervous System
Unlabeled
left embryo = control vehicle, DMSO; right embryo = DAPT-treated

Entry 2

GEISHA IdCHGA.Ratie.2014Data SourcePublication
Complete cDNA Template Probeshow
CAGGAATGAAGCCAGTTTACTGCATTTCTCTTGCCTTCAAGACACCATTTTTGCCTTAATAATGCAGAGGAGTGTTGCC
CAAAAGTTACCCACTAGCATCCAGGAGGGTGTCATGTTGGTTGAAAGTGAAGTTAAATGTGTTGGCTCTGAGCAAGGAG
AGAGCACCTGCCCCTCTTGCCATCATCTGCTTTTGGGGAAGGTCTCTTCCCCCCAAAAGGCTGCTCCCTCCTAGCCCAG
AGCCCTTACAGCAGCTCTGGGAGCACCTCATCCTTCTTGGTCAAAAGCAGTGTGAGTTGTATGGAGGAGGTCTACCCTG
CTGCTCCTGGAAAACTGGGACTGAATGGCCCAAATACCTCCATGTGTGCAGGCAAGGACTGAGGCAACACTCCCATATC
TTCCCATTGCAGTAGGCAGTGAAATAGGCAGGTGGCATGGCTCCAGTCATGCTTCCCACCCCTATCACCTCCCTGTTGC
CCCATTTCTGCTCTCGTTGCAGGACCAGGAGCTGGAGAGCCTGGCCGCCATTGAGGCTGAGCTGGAGCGCGTGGCCCAC
AAGCTGCACGAGCTGAGGCGGGGCTGAGGGCTGGCTGCAGCCTCTCTCCACCATGGTCTCCTTTCCTGGTCTCATGCCG
AGTACGATGAGCAGAAGCACCACGCCTTGGACGCCGGCCCCACGGGCGCCAGGCCCGCCTCCCTCGCAGTAGTGTTGTG
CCCATCACTGCTTCTTGCCCCCACGCTCCTCTGTCCACCTGCCCCATCGGGCCACCGTAGCCAAGAAGTGTGACCTACA
CCTGTATTTTCTCTCTTTTCTTTATTTTTCTTTCCTCCCTCCCCTTCTGTTTTTTAAAAGGCAGGAGAGCTCTCTAAGA
AGTTCTCCTCCCACTGGTAGTTTCACTGGGTAAAACTGCAATAACTTGTTACCTTTTGATTAAAAGCTGAGAACTCTGA
CTGTAATATATTCTATATAAAAAATTTATCTAAGGAAAAATAG
CitationRatié L, Ware M, Jagline H, David V and Dupé V (2014) Dynamic expression of Notch-dependent neurogenic markers in the chick embryonic nervous system. Front. Neuroanat. 8:158. doi: 10.3389/fnana.2014.00158
CopyrightCopyright © 2014 Ratié, Ware, Jagline, David and Dupé.
CommentsThe sequence below was obtained from NCBI (acc # CR523039.1) using the information provided in the publication as described in Ratie et al.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10
stage 10
stage 12
Peripheral Nervous System
Rhombomeres
 
13-18
stage 14
stage 14
stage 14
stage 15
stage 16
stage 16
stage 16
stage 17
stage 17
stage 17
stage 18
stage 18
stage 18
stage 18
Cranial PNS
Peripheral Nervous System
Rhombomeres
Unlabeled
Double labeled with HuC/D antibody (brown) and mRNA Probe (blue)
control - shows normal expression
19-22
stage 22
stage 22
stage 22
stage 22
stage 22
stage 22
Cranial PNS
Peripheral Nervous System
Rhombomeres
Spinal Cord
Spinal Ganglia and Nerves
Double labeled with HuC/D antibody (brown) and mRNA Probe (blue)
mz: mantle zone

Entry 3

GEISHA IdCHGA.Ware.2014Data SourcePublication
Complete cDNA Template Probeshow
CAGGAATGAAGCCAGTTTACTGCATTTCTCTTGCCTTCAAGACACCATTTTTGCCTTAATAATGCAGAGGAGTGTTGCC
CAAAAGTTACCCACTAGCATCCAGGAGGGTGTCATGTTGGTTGAAAGTGAAGTTAAATGTGTTGGCTCTGAGCAAGGAG
AGAGCACCTGCCCCTCTTGCCATCATCTGCTTTTGGGGAAGGTCTCTTCCCCCCAAAAGGCTGCTCCCTCCTAGCCCAG
AGCCCTTACAGCAGCTCTGGGAGCACCTCATCCTTCTTGGTCAAAAGCAGTGTGAGTTGTATGGAGGAGGTCTACCCTG
CTGCTCCTGGAAAACTGGGACTGAATGGCCCAAATACCTCCATGTGTGCAGGCAAGGACTGAGGCAACACTCCCATATC
TTCCCATTGCAGTAGGCAGTGAAATAGGCAGGTGGCATGGCTCCAGTCATGCTTCCCACCCCTATCACCTCCCTGTTGC
CCCATTTCTGCTCTCGTTGCAGGACCAGGAGCTGGAGAGCCTGGCCGCCATTGAGGCTGAGCTGGAGCGCGTGGCCCAC
AAGCTGCACGAGCTGAGGCGGGGCTGAGGGCTGGCTGCAGCCTCTCTCCACCATGGTCTCCTTTCCTGGTCTCATGCCG
AGTACGATGAGCAGAAGCACCACGCCTTGGACGCCGGCCCCACGGGCGCCAGGCCCGCCTCCCTCGCAGTAGTGTTGTG
CCCATCACTGCTTCTTGCCCCCACGCTCCTCTGTCCACCTGCCCCATCGGGCCACCGTAGCCAAGAAGTGTGACCTACA
CCTGTATTTTCTCTCTTTTCTTTATTTTTCTTTCCTCCCTCCCCTTCTGTTTTTTAAAAGGCAGGAGAGCTCTCTAAGA
AGTTCTCCTCCCACTGGTAGTTTCACTGGGTAAAACTGCAATAACTTGTTACCTTTTGATTAAAAGCTGAGAACTCTGA
CTGTAATATATTCTATATAAAAAATTTATCTAAGGAAAAATAG
CitationWare M, Hamdi-Rozé H and Dupé V (2014) Notch signaling and proneural genes work together to control the neural building blocks for the initial scaffold in the hypothalamus. Front Neuroanat. 2014 Dec 2;8:140. doi: 10.3389/fnana.2014.00140.
CopyrightCopyright © 2014 Ware, Hamdi-Rozé and Dupé
CommentsThe sequence below was obtained from NCBI (acc # CR523039.1) using the information provided in the publication as described in Ratie et al.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13
stage 13
stage 13
Hypothalamus
 

Entry 4

GEISHA IdCHGA.Anderson.2020Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
GATGAGCTGGCCAAGCAGCTGTCATCAAAGAAGCACATGGAGGAAAATGATAGTGGAGAAGACCCAGACAGGTCCATGA
AAATGGCATTCAGGTCCCACAAGTATGACTTCAGTAGCCCAGAGGAAGATGTGAGAAGGTCATGGAAGCATCACCCAAA
GGAGGACAGCAGTGAAGGATTTCCGCTTGTTCCCATGCCTGAAGAAAAGAAGGATGAGGAAGGCAGTGCTAACAGGAGA
ACAGAGGACCAGGAGCTGGAGAGCCTGGCCGCCATTGAGGCTGAGCTGGAGCGCGTGGCCCACAAGCTGCACGAGCTGA
GGCGGGGCTGAGGGCTGGCTGCAGCCTCTCTCCACCATGGTCTCCTTTCCTGGTCTCATGCCGAGTACGATGAGCAGAA
GCACCACGCCTTGGACGCCGGCCCCACGGGCGCCAGGCCCGCCTCCCTCGCAGTAGTGTTGTGCCCATCACTGCTTCTT
GCCCCCACGCTCCTCTGTCCACCTGCCCCATCGGGCCACCGTAGCCAAGAAGTGTGACCTACACCTGTATTTTCTCTCT
TTTCTTTATTTTTCTTTCCTCCCTCCCCTTCTGTTTTTTAAAGCGGCAGGAGAGCTCTCTAAGAAGTTCTCCTCCCACT
GGTAGTTTCACTGGGTAAAACTGCAATAACTTGTTACCTTTTGATTAAAAGCTGAGAACTCTGACTGTAATATATTCTA
TATAACAAATGTATCTTGGGAAAAACAGAAA
CommentsImages and probe sequence provided by Claire Anderson. The probe was synthesized from cDNA clone ChEST139e12; Related article: Anderson C1, Khan MAF1, Wong F2, Solovieva T1, Oliveira NMM1, Baldock RA3, Tickle C4, Burt DW2, Stern CD1. A strategy to discover new organizers identifies a putative heart organizer. Nat Commun. 2016 Aug 25;7:12656. doi: 10.1038/ncomms12656.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
stage 3
stage 3
Early Mesoderm
Epiblast
Primitive Streak
stage 3+
4-6
stage 4
stage 4
stage 5
Area Opaca
Early Mesoderm
Epiblast
Headfold
Lateral Plate Mesoderm
Notochord
Paraxial Mesoderm
Primitive Streak
stage 4+
7-12
stage 7
stage 8
stage 8
stage 9
stage 10
stage 11
stage 11
stage 11
stage 11
stage 12
Forebrain
Hindbrain
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Notochord
Pharynx
Primitive Streak
Rhombomeres
Sclerotome
Somites
extraembryonic mesoderm
11c
12b
section 1
section 2
stage 10+
stage 11-
stage 8+
13-18
stage 13
stage 13
stage 14
stage 14
Ear/Otic Placode
Head Mesenchyme
Hindbrain
Mesencephalon
Midbrain
Nasal Placode/Nerve
Neural Plate/Tube
Notochord
Peripheral Nervous System
Rhombomeres
Somites
14b
stage 13-
19-24
stage 21
stage 24
Eye
Foregut
Head Mesenchyme
Leg Mesenchyme
Midbrain
Nasal Placode/Nerve
Peripheral Nervous System
Pharyngeal Arches and Clefts
Rhombomeres
Wing Mesenchyme
Neurons migrating along the olfactory nerve towards the telencephalon

Mouse

EmageMGI:88394
EurexpressMGI:88394
MGI GXDMGI:88394

Frog

Xenbase960410

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-041010-161
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