GEISHA - A Chicken Embryo Gene Expression Database
Browse By
- Anatomical Location
- Stage
- Gene Name
- GEISHA ID
- Multiple Parameters
Search
- Quick Search
Data Class
Enter Text:
go
- Gene Family QuickSearch
Transcription Factors
Growth Factors
Receptors
MicroRNAs
- Human Disease Gene Search
Documents
- Downloads
- Protocols
- About GEISHA
- Contact Us
Resources
- Transgenic Birds
- Model Organism Databases
- Gene Expression Databases
- Genomic Resources
- Anatomical Atlases
- Chicken Stage Series
_

CNMD
chondromodulin

Gene
Official SymbolCNMD
Official Full Namechondromodulin
CGNC ID12720
also known asCHM-I, LECT1, leukocyte cell-derived chemotaxin 1|chondromodulin-1|chondromodulin-I|leukocyte cell derived chemotaxin 1
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204810
PolypeptideNP_990141
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.4723
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human11061ENSG00000136110MIM:605147
Mouse16840ENSMUSG00000022025All phenotypic alleles (3):Targeted, knock-out(2) Targeted, other(1) MGI:1341171
Xenopus100037893, 379773489325
Zebrafish791772ENSDARG00000013930ZDB-GENE-010713-1ZFIN:ZDB-GENE-010713-1
Gene Ontology
Molecular Function
Biological Processcartilage development, cell differentiation
Cellular Componentendomembrane system, extracellular region, integral component of membrane
Links to other databases
Entrez Gene395600
Ensembl GeneENSGALG00000016945
KEGGgga:395600

Entry 1

GEISHA IdLECT1.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerAGGTGAAGGGATGGCTTTTGAC
Reverse cDNA Template PrimerATTAACCCTCACTAAAGGGATGTGCGAAGGGTTTTGATTCcDNA Template Length841
Forward cDNA Template Probeshow
TGCAGCCACACAAATTCCATCCCACAGCCCCTCTTCCTGCCGTTTGTTTCTGATTAAACACGATGCGAGCTTTCCCATG
TCCCCTGGAGCAGCTTTGTGGGAAAGGTATGCTGTAATTGGTTTATAACCATTCATAATGACCTGGCAGCCCTGTACGG
ATAGCAACGGGGAGCGACTTAACTTGTGATTTATTTAGGTAAGCTACGTGGATGAAAGGTATTCCCAAGTGTACAAGTT
TAGCTAGTTGCCTAATTGGACATAAATTTTCACGTCTAGCTCAGAGAGAGGTTTTTGTTATGAAAGTCAGAATTTGGAT
TTATGAGCAAGCTTCTAGACTGCTAAACCAGTTTGTGAGCAAAGTTAGTGTTGTCTGTTCTGGGGTTTCTTAGTTTGCA
ATTCAGCGCCCGCTAGGATACTCTTTGTCATTGGTAAAGCTAATGGCACCTTAATTTAAGAGTTTATTTACACTCAGAA
TACCTGCCCTTGCTTTTAGCACAGTAACGCGCGTTTGGATTTAGAAGCCAGGATTGGCCATGCTGCTTTGGTCGGAGTC
TTTCATCAGTTTGGCGTTGTCAGGCTCCTGCTGGCTTCCTCCAGGAGCCCAAAGCTCTCTCACACAACGCCCATGATGC
GAGCGACCCACCAGCTGCAGGGCATGATGATGCGGCAGGCGGTGCGGCAGCCCTGGTAGTTGTATGGCCACGGGTAGTA
GCCCAGCAGAGGCTCACAGATCCTCTGGCACTGCGTGTAACTTCGCCTGCACTCGATGCAGCACACGCCCAGGTGGTCC
AGCATGGGGTCAAAAGCCNCCCCCNTTCCCCTAAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 5
Unlabeled
 
7-12
stage 7
stage 8
stage 11
Head Mesenchyme
Headfold
Neural Crest
Notochord
Sinus Venosus
Somites
 
13-18
stage 16
stage 16
stage 16
stage 17
Hindbrain
Midbrain
Myocardium
Notochord
Outflow Tract
Pharyngeal Arches and Clefts
Sclerotome
Sinus Venosus
Somites
Ventricles
truncus arteriosus
19-24
stage 19
stage 23
stage 23
stage 23
stage 23
stage 23
Eye
Face Mesenchyme
Head Mesenchyme
Heart
Hindbrain
Mesonephros
Midbrain
Myocardium
Neural Plate/Tube
Notochord
Outflow Tract
Pharyngeal Arches and Clefts
Sclerotome
Sinus Venosus
Somites
Spinal Cord
Tail
Ventricles
A-V Cushion
Maxillary process of branchial arch 1
25
stage 25
stage 25
stage 25
stage 25
stage 25
Cranial Ganglia
Heart
Hindbrain
Lung
Mesencephalon
Midbrain
Outflow Tract
Pharyngeal Arches and Clefts
Sclerotome
Spinal Cord
Spinal Ganglia and Nerves
AV Cushion

Entry 2

GEISHA IdCHMI.Shukunami.2008Data SourcePublication
Complete cDNA Template Probeshow
ACCATGGCCGAGGGCTCGGAGAAGGTACCCATCGCCCGAGCGGGGCCCGAAGACGTGGAGCAGGGCCTGCCGCCCGCAT
ATACGGCAGCAGTGCCCCCTCCGGGGCCAGGGCGGCTGCTGAAGGCAGGGGCCACTGTGCTCATCGCTGGGGCCCTTCT
GCTGCTGGCTGGGGCCATCGGTGCCTTCTACTTCTGGAAAGCCACTGAGAGGCAGGTCTACAACGTTCACTACACCATG
AGCATTAATGGAAAAGTGCAAGACGGATCGATGGAAATAGATGCCGGAAACAACTTAGAGACATTCAAAACAGGAAGCG
GGAGTGAAGAGGCTGTTGAAGTTCATGATTTCCAGATTGGCATCACCGGCATCCGATTTGCTGGAGGAGAGAAGTGTTA
CATCAAGGCCCAGCCCAAAGCTCGTGTGCCTGAGGTGGATGCCATGACCAAGGCCAGCCTGTCCTCTGACCTGGAAGAT
GAAATCATGCCTGTTAGATTTGACGAAAACTCTCTTATCTGGGTGGCTGCAGACGAGCCCATCAAGCACAACGGTTTCC
TAAGCCCCAAAATTTTAGAGCTTTGTGGGGATCTTCCGATTTTCTGGCTTCGACCTACATATCCCAAAGATAAACAAAG
AGAAAGGAGAGAAATGAAGAGAAATAAACGCCAGTCCGAGTCAAACTTCGATGCAGAACACAGAGCAGCTGCTGCTGAA
GAGGTGAACACCAGGTCCACCCCCACCCAGCTGACTCAAGATCTTGGCCCCCAGTCGAATGAAACCAGGCCAATGCAGC
AAGAAAGCGATCAAACACTTAACCCAGACAACCCATACAACCAACTGGAAGGTGAAGGGATGGCTTTTGACCCCATGCT
GGACCACCTGGGCGTGTGCTGCATCGAGTGCAGGCGAAGTTACACGCAGTGCCAGAGGATCTGTGAGCCTCTGCTGGGC
TACTACCCGTGGCCATACAACTACCAGGGCTGCCGCACTGCCTGCCGCATCATCATGCCCTGCAGCTGGTGGGTCGCTC
GCATCATGGGCGTTGTGTGAGAGAGCTTTGGGCTCCTGGAGGAAGCCAGCAGAAGCCTGACAACGCCAAACTGATGAAA
GACTCCGACCAAAGCAGCATGGCCAATCCTGGCTTCTAAATCCAAACGCGCGTTACTGTGCTAAAAGCAAGGGCAGGTA
TTCTGAGTGTAAATAAACTCTTAAATTAAGGTGCCATTAGCTTTACCAATGACAAAGAGTATCCTAGCGGGCGCTGAAT
TGCAAACTAAGAAACCCCAGAACAGACAACACTAACTTCGCTCACAAACTGGTTTAGCAGTCTAGAAGCTTGCTCATAA
ATCCAAATTCTGACTTTCATAACAAAAACCTCTCTCTGAGCTAGACGTGAAAATTTATGTCCAATTAGGCAACTAGCTA
AACTTGTACACTTGGGAATACCTTTCATCCACGTAGCTTACCTAAATAAATCACAAGTTAAGTCGCTCCCCGTTGCTAT
CCGTACAGGGCTGCCAGGTCATTATGAATGGTTATAAACCAATTACGCATACCTTTCCCACAAAGCTGCTCCAGGGGAC
ATGGGAAAGCTCACATCGTGTTTAATCAGAAACAAACGGCAGGAAGAGGGGCTGTGGGATGGAATTTGTGTGGCTGCAG
AATCAAAACCCTTCGCACATCCCAACATCAAAGCTGCCCCGGCATCAAGAATCTTGTATCCATGATACCACTGCAGTGT
CTGACAACTATCTGCCATCCAGCGACTACAGCAAAAGTATTTACACCCAACTGCAGGCCAAAGAGTCTCAAGACCCTTC
CGAACCTACGAAAGCCACTGTTATTTATAAACCCTTGAACTAGACACTTCTGACACAAGATTACAACCCCTCCTTATTC
CACATGGCATAGCGGTTGTTCGTGCCAGCTCCTTGGCCTTCACTGGAGCTAACCTTCTGTTCCCTACAAGAGAAATTGC
TTACTGGTAAATGAGAGGAGAAAAAGATTTTAACCTCACCCTTGTTGCCCAGGCAAACTCTGCAATTAGAGGGATTGAT
CCTATTATGTACTAAATCTCTACGGAAGGTACTGAGCTGAAGATGGTATGACTTAGGATTCCCAGTCTTTGAACAAAAT
TAGAAGTATTATACTGCCTTCATCCATACGACATCCTCAGCTCCACCCCTGAGTTCACGGAGCCATCTACACAGGCATG
ATAAACAAAAAGGTCTAATCTTTTAAGGTTCACTTTCTGAAGCATTCATTTTAGTGACTAAACAGCTCCCGAGATGTTG
CAAGCCTAGTAATGTTATTAGCACTGCATCACACAGAAAAGAGGAATTAGTTTGACATAATCGTGGCTTAAAGAAAATA
AAGACAACCTCATGCAGAATGCTAAACAGCGTATCTAAAAAGCAAAGTGTTAAATGAGAGAAGATGAGAATAGAGTTCA
GTATTTTGTCCTATTGTTATTATAGATAAGCTTCACCTTCCCTTAATCTCAAGAACAAACTTGCTTTGAAATACTCCAA
CTGGAAACTTCTTAGAGTGGGATTTCAAGGCCTGTTACATTTGAGGTTTTTGCTCTTTTGAAAGCAAATGACCTTGATC
ATTATGTTGTTTTAGAAGTACGCCATTCATATGCTTAGAAAAATCATTCTTTCTTCTTGGGTTTTTTTTTTTTTAATTT
TTTTATTTTTTACTGCTGATTAAACAAATACATTAAAAATGGCAAAAAAAAAAAAAAAAAAAAAA
CitationShukunami C, Takimoto A, Miura S, Nishizaki Y, Hiraki Y. Chondromodulin-I and tenomodulin are differentially expressed in the avascular mesenchyme during mouse and chick development. Cell Tissue Res. 2008 Apr;332(1):111-22. doi: 10.1007/s00441-007-0570-8. Epub 2008 Feb 1.
Copyright© Springer, Part of Springer Science+Business Media
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_204810.1
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 19
stage 19
stage 23
stage 24
stage 24
stage 24
Eye
Heart
Neural Plate/Tube
Pharyngeal Arches and Clefts
Sclerotome
Somites
 
25-30
stage 28
stage 29
stage 29
stage 29
stage 30
stage 30
Neural Plate/Tube
Notochord
Pharyngeal Arches and Clefts
Vertebrae
Wing
 
31-37
stage 37
stage 37
stage 37
Vertebrae
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.4723

Mouse

EmageMGI:1341171
EurexpressMGI:1341171
MGI GXDMGI:1341171

Frog

Xenbase489325

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-010713-1
Home | Contact
     
© 2008 Arizona Board of Regents
This website is hosted by the Biotechnology Computing Facility at the University of Arizona