GEISHA - A Chicken Embryo Gene Expression Database
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TRIM71
tripartite motif containing 71

Gene
Official SymbolTRIM71
Official Full Nametripartite motif containing 71
CGNC ID13926
also known asLIN-41, LIN41, E3 ubiquitin-protein ligase TRIM71|RING-type E3 ubiquitin transferase TRIM71|abnormal cell LINeage LIN-41|lin-41 homolog|protein lin-41 homolog|tripartite motif containing 71, E3 ubiquitin protein ligase|tripartite motif-containing 71|tripartite motif-containing protein 71
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001037275
PolypeptideNP_001032352
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.53063
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly44653FBgn0259745
Human131405
Mouse636931All phenotypic alleles (3):Targeted, knock-out(1) Gene trapped(2) MGI:2685973
Xenopus1004868986035038
Zebrafish561754ENSDARG00000075593ZDB-GENE-040128-1ZFIN:ZDB-GENE-040128-1
Gene Ontology
Molecular FunctionmiRNA binding, ubiquitin-protein ligase activity, zinc ion binding
Biological Processfibroblast growth factor receptor signaling pathway, G1/S transition of mitotic cell cycle, more...miRNA metabolic process, negative regulation of translation involved in gene silencing by miRNA, neural tube closure, neural tube development, positive regulation of gene silencing by miRNA, protein autoubiquitination, regulation of gene silencing by miRNA, regulation of neural precursor cell proliferation, stem cell proliferation
Cellular Componentcytoplasmic mRNA processing body
Links to other databases
Entrez Gene428445
Ensembl GeneENSGALG00000019622
KEGGgga:428445
GEISHA IdCLIN41.Lancman.2006Data SourcePublication
Complete cDNA Template Probeshow
CTCCGTCTTCCCCGAGCGGGCCAGCTACTGCCAGCACCACGACGACGAGGTACTGCATTTCTACTGTGATACCTGCTCT
GTCCCCATATGTCGTGAATGTACCATGGGGCGACATGTGGGTCACAGCTTTATCTACCTCCAAGATGCCCTCCAGGACT
CCAGAACTCTTACCATCCAGCTCCTGGCAGATGCTCAGCAAGGACGACAGGCTATTCAGTTGAGTATTGAACAGGCCCA
GGCTGTGGCAGAGCAAGTTGAGATGAAAGCGAAGGTGGTACAGTCTGAAGTCAAAGCAGTGACTACCAGACATAAGAAG
GCCTTGGAAGAGCGAGAGTGCGAGCTGCTCTGGAAGGTGGAAAAGATTCGTCAAGTCAAGGCTAAGTCGCTCTACTTGC
AAGTTGAAAAGTTACGTCAGAACCTAAATAAGCTGGACAACACTATTAGTGCTGTTCAGCAGGTCCTGGAGGAAGGCCG
TACCATAGATATTCTTCTGGCCCGGGACCGCATGCTGGCTCAGGTGCAGGAGCTCAAGAATGTGAGAGGCCTTCTGCAG
CCACAGGAGGATGACAGGATCATGTTCACGCCGCCTGACCAGGCGTTGTATATGGCCATTAAATCAATGGGCTTTGTCA
GTAGTGGGGCATTTGCTCCTCTGACCAAAGCCACTGGGGAAGGCCTCAAGCGTGCGCTGCAGGGCAAAGTAGCCTCTTT
CACAGTTATAGGCTACGACCACGATGGTGAGCCTCGCCTTTCAGGAGGTGACATGATCTCTGCAGTGGTAATGGGCCCA
GATGGAAATCTGTTTGGGGCAGACGTCAGTGATCAGCAGAACGGAACCTACCTGGTCAGCTACCGTCCGCAGCTAGAGG
GAGAGCATCTGGTGTCCGTGATGATGTGCAACCAACACATTGAGAACAGCCCCTTCAAAGTTGTGGTGAAATCTGGGCG
CAGCTACATAGGTATTGGGCTACCCGGGCTCTCGTTTGGCAGTGAAGGAGACAGCGATGGGAAACTCTGCCGCCCCTGG
GGGGTTAGCGTAGACAAAGAAGGCTACATCATCGTGGCTGACCGCAGCAATAACCGTATCCAGGTGTTCAAACCATGTG
GGACTTTCCATCACAAGTTTGGCACGCTCGGTTCCCGGCCTGGCCAGTTCGATCGTCCCGCCGGTGTGGCCTGTGACGT
CTCACGCCGGATCGTCGTGGCTGACAAGGACAATCATCGCATCCAGATTTTCACGTTTGAGGGGCAGTTCATTCTGAAG
TTTGGGGAGAAAGGAACAAAGAATGGGCAATTCAATTACCCGTGGGACGTGGCCGTCAACGCAGAGGGCAAAATCCTGG
TCTCCGACACAAGGAACCATCGCGTTCAGTTGTTCGGGCCCGATGGTGTGTTTCTTAATAAGTACGGCTTTGAAGGGGC
ACTCTGGAAGCACTTTGATTCCCCCAGAGGTGTGACTTTCAATCACGAGGGCCACTTGGTAGTGACAGACTTCAACAAC
CATCGCCTTCTGGTCATCCATGCAGATTGCCAGTCAGCACGCTTCCTGGGCTCGGAGGGGAGCGGGAACGGGCAGTTCC
TGCGCCCGCAGGGAGTGGCGGTGGATCAAGAGGGGCGCATCATCGTGGCCGACTCCAGGAACCACCGGGTGCAGATATT
TGAGTCCAATGGTAGCTTTTTATGCAAGTTCGGCGCTCAGGGAAGCGGCTTTGGTCAGATGGACCGTCCTTCAGGTATA
GCTGTCACCCCTGATGGCATGATTGTGGTGGTCGACTTTGGAAACAATCGAATCCTCGTCTTCTAA
CitationLancman JJ, Caruccio NC, Harfe BD, Pasquinelli AE, Schageman JJ, Pertsemlidis A, Fallon JF. Analysis of the regulation of lin-41 during chick and mouse limb development. Dev Dyn. 2005 Dec;234(4):948-60.
CopyrightCopyright © 2005 Wiley-Liss, Inc.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #AM087669.1 ).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 20
stage 20
stage 20
stage 22
stage 22
stage 22
stage 23
stage 23
stage 23
stage 24
stage 24
stage 24
stage 24
Leg Mesenchyme
Limb Buds
Trunk Mesenchyme
Wing Mesenchyme
 
25-29
stage 26
stage 26
stage 26
stage 26
stage 26
stage 27
stage 29
stage 29
Leg Mesenchyme
Neural Plate/Tube
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.53063

Mouse

EmageMGI:2685973
EurexpressMGI:2685973
MGI GXDMGI:2685973

Frog

Xenbase6035038

Fruit Fly

BDGPFBgn0259745

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-040128-1
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