GEISHA - A Chicken Embryo Gene Expression Database
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CLSTN3
calsyntenin 3

Gene
Official SymbolCLSTN3
Official Full Namecalsyntenin 3
CGNC ID10877
also known ascalsyntenin-3
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
Sequence Information
Genomic
RNAXM_416520
PolypeptideXP_416520
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human9746ENSG00000139182MIM:611324
Mouse232370ENSMUSG00000008153All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(2) MGI:2178323
Xenopus100036725, 4445805757719
Zebrafish555627ENSDARG00000073883ZDB-GENE-100921-73, ZDB-GENE-100921-73ZFIN:ZDB-GENE-100921-73, ZFIN:ZDB-GENE-100921-73
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene418297
Ensembl Gene
KEGGgga:418297
GEISHA IdCLSTN3.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerTGGGAACATTGAAAACACGGAG
Reverse cDNA Template PrimerATTAACCCTCACTAAAGGCAGTGAAGCCAGCCAAGTAACCcDNA Template Length995
Forward cDNA Template Probeshow
TAGTGGTGTATCAACAGANGGATCTCCTCGTACAGTATCTGGTGGGAATTATCATTTCCNTTTGGNTTTTCTCCTTGTT
TTTCTCCTCGGGTCCAGCAAGCTCCAATCATGAGTGAGGGTTCTGGCCGTGGGGGATGAATGAGGCCATTGTCATGAAT
GAGGGCAGGGTCATAAGAGACACCATCCACGTAGAGTGTGACAGTTGGAAACTCGAGGTTGAGGGCATAATGGTGCCAT
TCATCATCACAGACCTGCTCAAGCTTCCAGAGGAACTTCACAGGTCTTGCACTCTCCAGCAATGGCCAGTAGAGGAAAG
CAATTCGGCAGCCATGCACAGTCAGAGAGTAATGTGAGTAGCCATCCTCACTCTGTACTGTACTGCAGATCACTGTCTC
CTCTTCCCGCCTGCCTTTGCTGGGCACCACAGCATGTTTCATCCACACAGACAGGGTGAAGTGGTCACTCAGCCCCTCA
TGGGCATTCAGCCCGTTCATGACAGGCACTTGGGCAGCCTGGCTGCCGTTGAACCAGTAGATGAGGCTGCTGTCCTGGC
TGTAGTGCACTGAGAGCCGTGCAGTCCAGTTTGCTGTGGGGCTAGGCACAGGCAGCAAGTCAATCTCTCCTGAGGCAGC
ACCACAGAGTTTGCGTAGTGATTTCTCAGAGTAGTTATCGCGGTCACAGCCCTTAGCCACATGGTTTGTCTGCAGCTCC
ACCATGGCCTGGATATTCCACAGGGGCTCATCACAGGTCTCCAGGTGAATGCTGGGAAACAGTGCGAGGCTGCCTGCAC
CCGGTGTGTACTCAATCCTCTTGTTCCAGCCCTGCCAACTGGGCTTGCAGGTGGGTTTCACCTGGATTTCCACTTCAGC
ATCATCAGATGCCCGCTTTTTTCCACAGTCATAGGCTGTTACTGTGAATTTGTANACACGATCTCCACTGTACTGAAGT
TTCTCCGTGTTTCAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
Primitive Streak
 
7-12
stage 8
stage 8
stage 8
stage 9
stage 9
stage 11
stage 11
Anterior Intestinal Portal
Forebrain
Hindbrain
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Notochord
Primitive Streak
Somites
 
13-18
stage 14
stage 18
Dermatome
Ear/Otic Placode
Esophagus
Eye
Foregut
Heart
Notochord
Oral Pharynx
Outflow Tract
Pharyngeal Arches and Clefts
Sclerotome
Sinus Venosus
Somites
Spinal Cord
Spinal Ganglia and Nerves
Trunk Mesenchyme
 
19-24
stage 19
stage 19
Foregut
Notochord
Sclerotome
Sinus Venosus
Spinal Cord
Spinal Ganglia and Nerves
Trunk Mesenchyme
 
25-27
stage 25
stage 25
stage 27
stage 27
stage 27
Anterior/Second Heart Field
Cardinal Veins
Duodenum
Esophagus
Eye
Forebrain
Foregut
Heart
Hindbrain
Midbrain
Oral Pharynx
Outflow Tract
Pharyngeal Arches and Clefts
Sclerotome
Spinal Cord
Spinal Ganglia and Nerves
Trunk Mesenchyme
jugular ganglion

Mouse

EmageMGI:2178323
MGI GXDMGI:2178323

Frog

Xenbase5757719

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-100921-73, ZDB-GENE-100921-73
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