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A chicken embryo gene expression database

	Anatomical Location
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	Gene Name
	GEISHA ID
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CNTN1
contactin 1

The human orthologue of this gene is associated
with the following human disease:

Myopathy, congenital, Compton-North

Gene

Official Symbol	CNTN1
Official Full Name	contactin 1
CGNC ID	7248
also known as	F11, contactin-1, contactin-1\|neural cell recognition molecule F11\|neural cell recognition protein
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001004381
Polypeptide	NP_001004381
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.4796

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	1272	ENSG00000018236	MIM:612540	MIM:600016
Mouse	12805	ENSMUSG00000055022	All phenotypic alleles (2):Targeted, knock-out(1) Targeted, other(1)	MGI:105980
Xenopus	100487602, 378666			491713
Zebrafish	353150, 541474	ENSDARG00000045685	ZDB-GENE-030427-1, ZDB-GENE-041210-236	ZFIN:ZDB-GENE-030427-1, ZFIN:ZDB-GENE-041210-236

Gene Ontology

Molecular Function	carbohydrate binding, glycoprotein binding, protein binding
Biological Process	cell adhesion, cerebellum development, neuron projection development, more...
Cellular Component	anchored component of membrane, plasma membrane

Links to other databases

Entrez Gene	417786
Ensembl Gene	ENSGALG00000009523
KEGG	gga:417786

GEISHA Id	CNTN1.Yamagata.2012	Data Source	Publication
Complete cDNA Template Probe	show GAATTCCTTTTGAGATAATCTCTGAATAGAAGATAACCATGAGGTTCTTCATCAGTCATCTTGTTACACTCTGTTTCAT CTTCTGTGTGGCAGACTCTACCCATTTTTCAGAGGAAGGAAACAAAGGTTATGGACCCGTTTTTGAGGAGCAACCCATT GATACTATCTATCCAGAAGAATCTTCAGATGGACAAGTTTCAATGAACTGCAGGGCTCGAGCAGTTCCTTTTCCTACTT ACAAGTGGAAACTCAACAACTGGGATATTGATTTAACAAAGGATCGCTACAGTATGGTAGGAGGCAGACTTGTTATCAG TAATCCAGAGAAATCAAGGGATGCTGGAAAATATGTCTGTGTAGTATCGAATATCTTTGGAACTGTCAGAAGCAGTGAA GCCACTCTGAGTTTTGGATATCTGGATCCTTTTCCACCAGAGGAACACTATGAGGTTAAAGTACGAGAAGGTGTTGGAG CAGTGCTTCTTTGTGAGCCTCCTTACCACTACCCAGATGATCTCAGTTATCGCTGGCTTCTAAATGAGTTCCCAGTATT CATTGCTTTGGACAGACGACGGTTTGTGTCTCAGACGAATGGCAATCTCTACATTGCAAATGTAGAAGCATCAGATAAG GGAAATTATTCATGTTTTGTGTCCAGCCCTTCGATAACAAAGAGTGTATTCAGTAAATTTATTCCACTTATTCCACAGG CCGATCGTGCCAAAGTGTATCCTGCTGATATCAAGGTGAAGTTCAAGGACACGTATGCTCTCCTGGGGCAAAATGTGAC ACTGGAGTGTTTTGCTCTTGGGAATCCGGTTCCTGAACTCAGATGGAGTAAATACCTTGAACCTATGCCAGCCACTGCT GAGATAAGCATGTCTGGTGCAGTTCTTAAGATCTTTAATATTCAGTATGAAGATGAAGGACTTTATGAGTGTGAAGCTG AAAACTATAAAGGAAAAGATAAACATCAAGCAAGAGTTTATGTGCAAGCCTCTCCAGAGTGGGTAGAACATATCAACGA CACAGAGAAGGATATAGGCAGCGATCTCTACTGGCCGTGTGTAGCTACAGGCAAGCCTATTCCAACAATTAGGTGGTTG AAGAACGGTGTCTCGTTCCGGAAAGGTGAACTACGAATTCAAGGCCTGACCTTTGAAGATGCTGGCATGTATCAGTGTA TAGCAGAAAACGCACATGGAATTATTTATGCAAATGCTGAACTGAAGATTGTGGCTTCACCTCCTACTTTTGAACTGAA CCCTATGAAGAAGAAAATCCTAGCAGCTAAAGGGGGGCGTGTAATCATTGAATGCAAACCTAAAGCTGCTCCTAAGCCA AAATTCTCCTGGAGCAAAGGAACAGAATTGCTTGTAAATGGGAGCCGCATACATATTTGGGATGATGGGAGCCTGGAAA TTATCAATGTCACAAAGTTGGATGAAGGCCGCTACACCTGTTTTGCTGAAAATAACCGAGGAAAAGCTAATAGCACTGG TGTTCTGGAAATGACAGAAGCTACAAGGATTACTTTAGCACCACTGAACGTTGATGTCACTGTTGGAGAGAATGCTACT ATGCAATGCATTGCATCCCATGATCCCACATTAGATCTGACATTTATTTGGTCTCTAAATGGCTTTGTAATAGATTTTG AGAAAGAGCACGAACATTATGAAAGGAATGTCATGATTAAATCCAATGGTGAGCTGCTCATTAAAAATGTTCAGCTGCG GCATGCTGGAAGATACACATGTACTGCCCAGACAATTGTTGACAATTCTTCAGCTTCAGCTGACCTTGTTGTAAGAGGT CCTCCAGGCCCTCCAGGAGGTATAAGAATAGAAGAAATTAGAGACACTGCTGTAGCACTTACCTGGAGTCGTGGAACAG ACAATCATAGCCCTATTTCTAAATACACTATCCAGTCAAAAACTTTCCTATCTGAAGAGTGGAAAGATGCCAAAACAGA GCCATCAGATATTGAAGGAAACATGGAATCTGCTAGAGTGATTGATTTAATTCCATGGATGGAATATGAGTTCCGGATA ATAGCAACAAACACTTTGGGAACTGGGGAACCGAGTATGCCATCACAGAGAATCAGAACTGAAGGCGCTCCTCCTAATG TGGCTCCTTCTGATGTTGGAGGAGGAGGTGGAAGCAATCGAGAGCTGACGATAACATGGATGCCTTTGTCAAGAGAATA CCACTATGGCAATAACTTTGGTTACATAGTGGCTTTCAAGCCGTTTGGTGAGAAAGAATGGAGAAGAGTTACAGTTACT AATCCTGAAATTGGCCGTTATGTCCACAAGGATGAATCAATGCCTCCTTCCACCCAGTACCAAGTAAAAGTGAAAGCCT TTAACAGCAAAGGGGATGGACCATTCAGTCTCACTGCTGTCATTTATTCAGCACAAGATGCTCCAACTGAGGTACCTAC AGATGTGAGTGTGAAGGTTTTGTCATCTTCTGAAATTTCTGTTTCTTGGCATCACGTTACTGAGAAATCTGTGGAAGGA TATCAGATTCGTTACTGGGCTGCTCATGATAAAGAGGCAGCTGCGCAGAGGGTGCAAGTAAGCAATCAAGAGTATTCAA CCAAACTGGAAAACTTGAAGCCTAATACACGCTACCACATAGATGTTTCTGCCTTCAACAGTGCAGGCTATGGACCTCC CAGTAGAACCATTGACATTATTACCAGGAAAGCACCTCCAAGCCAACGTCCAAGAATCATCAGTTCTGTAAGATCTGGT TCAAGGTACATCATCACCTGGGATCATGTGAAGGCAATGTCAAATGAATCCGCAGTTGAAGGATACAAAGTGCTATATA GACCAGATGGACAACATGAAGGCAAGTTGTTTTCAACTGGAAAACACACAATAGAGGTCCCAGTCCCCAGTGACGGTGA ATATGTTGTTGAGGTCCGAGCACACAGTGAAGGAGGAGATGGAGAAGTAGCTCAAATTAAAATTTCAGGTGCCACTGCT GGAGTACCGACTCTGCTTCTGGGCCTGGTGCTGCCTGCCCTCGGTGTCCTTGCCTACTCGGGATTCTGAATGTAGCCGG GTTTACCTTGTCCTCACCCGAACACAAGGGACTCCCTTTGAAGAGGAGGACTGCAACTCTCGATTCCTGTGGCACCATC CTAAGCCAAATAAATTACACTTTAAAATAAGTTACCCTACCAATTTCCTATGGACTTTAAAAGGACTGAGGCATCCAGG AACTCCTTCATTAAGTAAATCAACTTTTGAAAGGATAAGAAATATTTTTAACTTGTTCCAATATGCCTTATAAAAACAC TTATGCTGATCTGTGACAGTTGCATGATTCGGTCCAATGGGGCAAGTTACAGTGTTAAAACCCAATAACATAGGCTGTA CAGTGAAAGTAAAATCACCATACGTAGGTGCTTTAACTTGAATAACAAATTGTGAAATATAATAGAGATTGAAATGTTG ATTGTATGTGATAAATGTAAGAGTACTACGTCTGTCTGTACTATCCTATATGTTTTGTGTACTGCATATTTTTGAATGG CCCCATCATCATTCATTGGGATTAATGGTTTTTTGAGAGACAGTCAAAGCAAAAACATTTTGTTCATTTTCACAGCTAT ATTTCTTGAGGCTATTGGATACAATTTGAAGGACTTGAAATAAATGTCAGTGGCAAGAAAAGTTTTATTTTAAATATGT TCAGAATACCTGAGACATTCATAGTATGCTCAGCTTAAAGGAGTTTACCTGTACTTCACTGACACTAGATTTACTGTAT TTTTTTCTTAAAACAGTTCTGTTGAAAATTCTGTTATGGTCACTGTTGATGATTTTAGGAGTGAAATGTCAGCTTTCAG GGAAGCAGCACAATGTATCGGTTTTGATTTCATATTATTACTATTATTATTAAGGTAGCAATATAACACATAGAAGACT GAAGATATAGTCCATATTAAGATCAGCTAAATGGACCATGAAATGGTAGGAAGCTTATGTTATTTTTTAAAGTAAAAAG ATTTAAAATATAAAAAAGAAATAGATATACAGTAAATGACAAAAACAGAGTAGCACAGTTAAAAAATTATTATATTTAC ATTTCTATGCTGCAGATGCCAGGTGTTACCTTCCTGTGGTGAAGTGTACATTTGGGAGAACTATATGCTTTTTCAAGAA TTTGATATTATTCTAATATTCATAGTGTTGTAAATAAGAGTTTTAAAGTTCTGGGACTGTTTCCCTATTGGACAGAGTA CTGAATGGTCCAACTGTGTGTTAATTCATGAAAGTCAGATCCCAAATGTCAGTTGAAACTAAATGTTTGCTATTGCCTT TGCAAAATGGGAATTCTATTAGAGATAGAGAATGTTTTTGTTCTGACTGTGTCCAGAGTGTTTCAGTGTTTTTTTGGAG TTTGTTTTATTTTTTTAAGTTTTTAAAGAAATACACATTCTTTATGTTTTCCATGGTATGCTGGGAATTAGTTTGAGTG TGAATGTTGAAGAAACACAGTGATATTGAATCAGATGGCTCGAGTAATAGTGCAATGTCTGATGCTTCAAGAATTATAA GCTTTGAATCATATTTTATTAGCACAACCTTGCTAGCTACTTAGAAATAGATTTTATCTTTTTAGAACTGATACTGTAG AGGTCCATAACAATATTTACATGGAGCAAGAATAGGCCTATTAATGATTTTCACCCCCTTCTTTAATTTGTATAATTTT GTACTATATATTTACATGTACAAGTGTAGAGTCTTCATCAAGAAATATCAATAATACTGTTCTAGTTTAATTTTAACTA TTTGGTACAAGTTGACAATTTTTTAAATAGGTGAAAGTGATAACTTCCCTACAGAGGAATGTCAAAGTGTCAAGCACTA CTCCGTTTCGTAAATTGTATAATTATTTGAAAGAGAAATGATCTGTCTTCATACATGAGAAACTAATATGCTGTAAGCC TTCTGTACAAAAAA
Citation	Yamagata M, Sanes JR. Expanding the Ig superfamily code for laminar specificity in retina: expression and role of contactins. J Neurosci. 2012 Oct 10;32(41):14402-14. 10.1523/JNEUROSCI.3193-12.2012.
Copyright	Copyright © 2012 the authors
Comments	According to the authors, "Full-length chicken cntn1, 2, 4, and 5 cDNAs and partial chick cntn3 and 6 cDNAs were amplified from oligo-dT-selected mRNA from embryonic day (E) 15 chick retina and optic tectum, using SuperScript III (Life Technologies), and Phusion high-fidelity thermostable DNA polymerase (New England BioLabs), and the products were cloned into pCR8-TOPO (Life Technologies)." As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence was obtained from NCBI (acc# NM_001004381.3).