GEISHA - A Chicken Embryo Gene Expression Database
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CNTN4
contactin 4

Gene
Official SymbolCNTN4
Official Full Namecontactin 4
CGNC ID49671
also known asFAR-1, contactin-4, contactin-4|FAR-1 protein fragment
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Sequence Information
Genomic
RNAXM_414435
PolypeptideXP_414435
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human152330ENSG00000144619MIM:607280
Mouse
Xenopus100216195, 432118492898
Zebrafish571349, 569437ENSDARG00000019405, ENSDARG00000062880ZDB-GENE-060929-776, ZDB-GENE-081030-10ZFIN:ZDB-GENE-060929-776, ZFIN:ZDB-GENE-081030-10
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene396149
Ensembl Gene
KEGGgga:396149
GEISHA IdCNTN4.Yamagata.2012Data SourcePublication
Complete cDNA Template Probeshow
TGCTGAATCCTCAGTACCACATTTGGTGTCTGTAGGGAGCACTAGGCTCCTGGGGGGGATCCTTGTGTGCACGGTGAAC
TGGTGTAAAGAGTGCCCATCCAGCACACTACGTTGTCTGGAGGTATTGGAACTTTGACTGAAGAGTACGTATCATGCAC
TGGAGAAGATTAGAAGTGGCCTAAAATTTCCACGGAGCCTGGTTCTCTCCTGCAGTTCCTGACCTTGTCGTCTCTGCCC
TGGGAAGCTGAAGATGAGGTTGCTATGGGAGCTTCTCGTGCTGCAGTCATTCATGGTGTGCCTTGCAGACGACAACATG
CTGCACGGGCCGGTTTTCCTGCAGGAGCCCAGCAGTGTGATCTTCCCCTTGGATTCAGAGGAAAAGAAAGTGAAGCTGA
ACTGCGAAGTGAAAGGAAATCCCCGGCCAACCATTGGGTGGAAGTTAAATGGAACCAATATTGACATCGGTATGGATTA
CCGCTACAGCATGGTGGAAGGCAACCTGTTGATCAATAATCCCAATAGAACTCAAGATACTGGAACATACCAGTGTGTA
GCAACAAACCCATTCGGAAGGATCATTAGCAGAGAAGCAAAGCTTCAGTTTGCTTATCTCGAGAACTTCAAGACCAGAG
TAAGAAGCACAGTGTCCGTCCGCCAGGGCCAGGGCATGGTGCTGCTGTGTGGACCACCGCCACACTCCGGAGAGCTCAC
CTACGCCTGGATCTTCAATGAGTACCCATCGTTCGTGCACCAGGACAACCGCCGCTTCGTCTCCCAGGAGACAGGCAAC
CTGTACATCGCCAAGGTGGAAGCTTCTGACGTGGGCAACTACACGTGTGTGGTGACCAACACGGTGACCAACAGCCGGG
TCCTGGGCCCGCCAACCCCGCTCATCCTCAGGAACGACGGGGTGATGGGGGAATACGAGCCGAAAATAGAAGTGCAGTT
CCCAGAAACGGTTCCGTCTGCAAAAGGAACAGCGGTGAAACTGGAGTGCTTTGCCCTGGGAAACCCCGTTCCTACGATC
AGCTGGAGGAGAGCAGATGGGAAACAGATACCCAGGAAAGCCAGGAGACACAGATCGAATGGGCTTCTGGAGATCCCAA
ATTTTCAGCAGGAAGATGCTGGGCTCTACGAGTGTGTCGCTGAAAATGTGAGAGGGAAAAACGTGGCACGAGGACAGCT
GACATTTTATGCTCAGCCCAACTGGATTCAGAAGATCAGTGATGTACACGCAGCCATTGAGGAAAATGTCTTCTGGGAG
TGCCACGCGAGCGGGAGGCCGAAGCCCTCCTACCGCTGGCTGAAGGATGGTGAACCACTACTGCCTCAGGGCAGAGTTC
AGATAGAGCAGGGCTCACTGACCATAAGGAATGTCAGCCTGTCGGATGCCGGCATGTATCAGTGTGTCGCAGAAAACAG
ACATGGCACCATTTTTGCCAGCGCAGAACTGAGTGTCATAGCTGTGGGGCCAGACTTTTCCAAAACGCTCCTGAAAAAG
TTAACTCTTGTGAAAGTGGGCGGTGAAGTAATCATTGAGTGCAAGCCGAAAGCTTCCCCCAGACCTACTTATTCTTGGA
AGAAAGGAAAAGACATCCTAAGAGAAAATGAGAGAATCACCGTTTTGGATGACGGCAGCCTCCGAATTGTCAACGTCAC
CAAGTCGGACACGGGGAGCTACACCTGTGTGGCCACCAACCACTTCGGGACAGCGAGCAGCACCGGCAGCTTGGTTGTG
AAAGATCCAACACGGGTTATGGTGTCACCTTTCAGCATGGATGTCACTGTTGGGGAAAGTATCGTCTTGCCTTGCCAGG
TGTCCCATGATCACTCGCTCGACATCGTTTTTACCTGGTCATTCAATGGACATCTGATAGACTTTGAAAAAGATGGGGA
TCACTTTGAAAGAGTCGGAGGGCAGGATTCAGCTGGTGATTTGATGATCAGAAGCATCCAGCTGAAGCATGCTGGGAAA
TACGTCTGCATGGTACAAACAAGTGTGGACAAGCTATCTGCTGCTGCAGACCTGATTGTAAGAGGTCCCCCGGGCCCAC
CCGAGGACGTGACGATCGATGAGATCACCGACACCACGGCCCAGCTGTCCTGGAGGCCGGGAGCAGACAACCACAGCCC
CATCACCATGTATGTGGTGCAGGCCCGGACGCCCTTCTCGGTGGGCTGGCAGGCTGTGAGCACAGTTCCAGAGGTGATC
GACGGCAAGACATTCACAGCCACTGTGGTGGGCCTCAACCCTTGGGTCGAGTATGAGTTTCGAGTTGTGGCTGCCAACT
TGATTGGGATAGGGGAGCCAAGCAGACCTTCGGAGAACAGAAGAACTGAAGAAGCTCTTCCTGAAGTCACCCCAGCCAA
TGTCAGCGGAGGCGGTGGGAGCAAGTCAGAACTGGTCATTACATGGGAGACCGTGCCCGAGGAGCTGCAGAATGGAGGT
GGCTTTGGCTACGTGGTGGCCTTCCGCCCCTTTGGCACCATCAGCTGGATGCAGACCGTCGTGGCCTCTCCAGACGCCT
CCAGATACGTCTTTCGCAATGAGAGCCTGCCGCCCTTCTCACCCTACGAAGTGAAAGTGGGGGTGTACAACAACAAGGG
GGAAGGCTCCTTCAGTCCTGTGACAGTCGTGTACTCAGCAGAGGAAGAGCCGACCAGAGCTCCAATCACGGTCCTCGCC
AGGAGCCTTTCTGCCACAGACATTGAAATTTCTTGGGCTCCTCCTCGAGAGAATCAACACAAAGGAAGGATACAAGGCT
ATGAGGTCAGGTGTTGGAGACATGACGAAAAGGAAGAGAATGCAAGAAAGATCAGGACAGTTGGTAACCAAACATCTGC
CAAAGTCACCAACTTGCAGGGCAATGCGCTCTATCACCTGGCAGTCAAGGCGTACAACACTGCTGGCACCGGTCCGTCC
AGCGCCATGGTCAACGTGACGACAAAGAAGCCGCCACCAAGCCAGCCCCCCGGGAACATCATATGGAACTCATCAGACT
CCAAGATCATACTGAACTGGGACCAAGTGAAAGCGCTGGATAATGAGTCAGAAGTGCGGGGCTACAAAGTTCTGTACAG
GTGGAACAGGCAGAGCAGCGCATCTGTGATCGAAACCAACAGGACCTCGGTGGAGCTCTCCCTGCCCTTTGACGAGGAC
TATATCATCGAGATAAAGCCCTTCAGCGACGGCGGCGATGGCAGCAGCAGCGAGCAGATCCGGATCCCAAAGATCTCGA
ATGCATACGCAAGAGGAGGCAGCTCTTCGACCTCCAACGCCTGCACACTGTCGGCCATCAGCACGATAATGATCTCGCT
CACAGCTCGGTCCAGTTTATGACAAAAATTACACAGAGGACTTCTTGTTTATAATATAAGCAACATTTAGCTAGCTGTT
TCGAAGACACCCAGTACCAAGTAATATTGTGGTTTGAGTACATCTTACTACTGGAAAAATGTTTATGCTTCTTTAGGAA
TGGCATTATACAGTACTTCCTCAAAGCAAATATAGCTTTGTCTGAAGTTTCCTTGGAAACTCTGCAATGCACTGAAAAC
ATCTGTAATACGATGTTACCAAAGCAGTTTACATATGTCCTTATATGCATATTTTTTATTATATATTTAGTGTTTTATA
GAATTTTTTAAAGTTAACATATGATGTAGATATTAATTTTTCCTCTGCTATAAAATGCTATGGACAACATGATCATGAA
AATATTGTTTGGAATTTTTTCCTTTCTGACCAAGAGTTCCACGTTGTTCTTAGTCAATTGGCCGCCACTTTCCTGTTCG
GTGTCACAGGGCTCCGCGGGGCAGAACTGCTTCCCACTGGGTTCAGAGTGAGCGGCGATCCTTGTGTGAACCCA
CitationYamagata M, Sanes JR. Expanding the Ig superfamily code for laminar specificity in retina: expression and role of contactins. J Neurosci. 2012 Oct 10;32(41):14402-14. 10.1523/JNEUROSCI.3193-12.2012.
CopyrightCopyright © 2012 the authors
CommentsAccording to the authors, "Full-length chicken cntn1, 2, 4, and 5 cDNAs and partial chick cntn3 and 6 cDNAs were amplified from oligo-dT-selected mRNA from embryonic day (E) 15 chick retina and optic tectum, using SuperScript III (Life Technologies), and Phusion high-fidelity thermostable DNA polymerase (New England BioLabs), and the products were cloned into pCR8-TOPO (Life Technologies)." As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence was obtained from NCBI (acc# XM_414435.3).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-41
stage 40
stage 40
stage 41
stage 41
stage 41
stage 41
stage 41
stage 41
stage 41
Retina
Double labeled in situs: CNTN4(green): CNTN5(red)
Double labeled in situs: CNTN1(green):CNTN4(red)
Double labeled in situs: CNTN2(red): CNTN4(green)
Double labeled in situs: CNTN3(green): CNTN4(red)
Double labeled in situs: CNTN5(green): CNTN4(red)

Mouse

Emage
MGI GXD

Frog

Xenbase492898

Fruit Fly

BDGP

Zebra Finch

ZEBrACNTN4

Zebrafish

ZFINZDB-GENE-060929-776, ZDB-GENE-081030-10
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