GEISHA - A Chicken Embryo Gene Expression Database
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CNTN5
contactin 5

Gene
Official SymbolCNTN5
Official Full Namecontactin 5
CGNC ID49261
also known asFAR-2, contactin-5, contactin-5|F11 axonin-1-related protein 2|FAR-2 protein fragment
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Sequence Information
Genomic
RNANM_204612
PolypeptideNP_989943
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human53942ENSG00000149972MIM:607219
Mouse244682ENSMUSG00000039488All phenotypic alleles (3):Targeted, other(3) MGI:3042287
Xenopus100493649953060
Zebrafish327429ENSDARG00000021584ZDB-GENE-030131-5640ZFIN:ZDB-GENE-030131-5640
Gene Ontology
Molecular Function
Biological Processcell adhesion
Cellular Componentanchored component of membrane, plasma membrane
Links to other databases
Entrez Gene395317
Ensembl Gene
KEGGgga:395317
GEISHA IdCNTN5.Yamagata.2012Data SourcePublication
Complete cDNA Template Probeshow
AAGAAACAACAAAACCAACCAACTCTGCAATCCTCTGCTCCCCACAGGCTGAACAGTATAAGGGACTGCTCTATTTGAG
GCTGTCGGGAGGATGGGAAAGACAGACTGAGAGTCAGGGAGAGAGAGACGGCGCACCGCCGCGGTCACTGAAAAGGCAC
CTAACACTTTTTGATTCACTTCAGCTCCTGAGCATCATCACACTCCACCCATACAAGTACCATACTGTGGAGATAATCT
TCATTTTAAAGGACAACGAATGTACAGACAACAGGAAAGCTAAGGCAAAGCTTTAATGAAGAAGCATCAACACTGCTAA
CAATTGCACAAAGAGGGACCAAAGACCTTTTCGACCAATGATGTGGTTGTCATGGAAACTGTTTCTGTTTCTGTCACTC
ATCGGGTGTCTTTCAGAAAGTGTTGACTATGGACCGGTGTTTGTACAAGAACCAGATGATGTGATTTTTCCCACTGACT
CTGAAGAGAAAAAAGTGTCTCTGAATTGTCAAGCTCATGGAAGTCCGACCCCCACATACAGATGGCTTCGAAATGGAAC
TGAAATTGACGTTGAAAGTGATTATCGCTACAGCCTAATAGAAGGAAGTTTGATCATCAGTAACCCTAATGAGATGAAG
GATTCTGGACAGTATCAATGTTTAACTACCAATATGTTTGGTAGCATATTAAGCAGGGAAGCTGTTCTTCAGTTTGCAT
ATTTGGGGAATTTTAGTGGTCGGACAAGAAGTGCTGTCTCTGTACGTGAAGGTCAAGGAGTGGTTCTGATGTGCTCCCC
TCCACTTCATTCACCAGAAATCATCTATAGCTGGGTGTTTAATGAGTTCCCATCTTTTGTGGCAGAAGATAGCAGACGT
TTCATCTCCCAGGAGACAGGCAATCTCTACATCTCCAAGGTGCAAACATCTGATGTTGGCAGCTATATATGCCTGGTAA
AAAACACAGTGACAAATGCCAGAGTTTTGAGTCCTCCTACACCTCTGACACTGAGGAATGATGGTGTGATGGGGGAATA
TGAACCAAAAATTGAAGTTCATTTTCCTTACACAGTTACAGCAGCAAGGGGAACAACTGTTAAAATGGAATGTTTTGCA
CTTGGCAACCCTGTTCCAACAATCTCTTGGAAGAAAGTGAATGGTCATAATCCAAGTAAAGCCCGTCTGAGAAAATCCC
AAGCTGTGCTTGAAATACCTAATGTGCAGCTAGAGGATGCAGGGATGTACGAATGTAAAGCTGAAAACTCGCGTGGAAG
GAATGTCTTCAGAGGACAGCTACAAGTGTACACCTACCCACAGTGGGTGGAGAAACTTAATGATACTGAATTAGACAGT
GGGGAACAGCTACGATGGGAATGTAAAGCCACTGGAAAGCCAAGGCCCACGTATCGTTGGCTGAAAAATGGAGTTCCTC
TCTGGCCACAGAGCAGAATTGAGATGATTAACAGTGTACTGATGATCCGCACTGTGAACATCTCAGATGCTGGAATGTA
TCAGTGCTTAGCAGAAAATAAGTATGGCACCATCTATGCCAGTGCCGAACTGAAGATTTTAGCTTCGGCTCCCACTTTC
CCACTAAATCAAATGAGGAAAACAATAATTATTACCAAGGGCCAAGAAGTTGTCATTGAGTGCAAGCCACAAGCCTCTC
CAAAGCCAACTATCACTTGGAAGAAAGGAGACAAAGCTTTAAGGGAGAGTAAGAGGGTAACTATTCTTCCACAAGGAAG
CTTGCGAATTCTGAATGCTTCCAAGTCTGATGAAGGACGGTATTCATGCCGAGGTGTAAATGTATTTGGGTCAGCAGAA
ATTGTTGCATCAGTATCTGTTAAAGAACCTACAAGAATAGAGCTGACTCCCAAGAAGATAGAGTTAACGGTTGGAGAAA
GCATCGTCCTCAGTTGCAAAGCCCTTCATGATAGCACGCTAGATGTCACTTTCTATTGGACACTTAATGGGCAGCCAAT
TGATTTTGATAAAGAAGATGGGCACTTTGAAAGCATCAAGGCACAAGCGTCCTCGGCAGACCTGATGATCAGGAACATC
CTACTGATGCATGCCGGGAGATACGGCTGCAGGGTCCAGACTGCAGCAGACGCCGTGTCGGATGAGACCGAGCTGCTCG
TTAGGGGTCCTCCTGGTCCACCAGGGGTTGTAATAGTGGAGGAAATTACAGACACCACAGCAACACTCTCCTGGAGTCC
TGGGGCAGACAATCACAGCCCGATCTCCCTCTACAACCTGCAAGCACGCAGTCCATTTTCTCTTGGCTGGCAGACAGTA
AAAACAGTTCCTGATGTGATAAGTGGAGACATGGAGTCTGCTATGGCTGTTGAACTGAACCCCTGGGTGGAGTATGAGT
TTAGAGTTGTAGCAACCAACAAAATTGGGACTGGAGACCCAAGTGCACCATCCCGCATGATCAGAACCAATGAAGCAGT
TCCAAAGACACCTCCAGCTAATGTAAGTGGCAGAAGTGGAAGACGTCATGAATTAGTAATAGCATGGGAGCCAGTATCA
GAAGAATTTCAGAATGGAGAAGGATTCGGATATATTGTAGCATTCAGACCGAATGGAACACGCGGTTGGAAGGAAAAAA
TGGTGACATCTTCAGATGCCTCAAAGTTTATCTATAGAGATGAAAGTGTTCCACCTCTCACTCCTTTTGAGGTGAAAGT
TGGTGTTTACAATAACAAAGGTGACGGTCCCTTCAGCCCAATTGTGGTCATCTGCTCAGCTGAAGGAGAACCCACTGCT
GCTCCTATCGATGTCAAAGCTACGAGTTTGTCTGTATCAGAGATTCTTGTTGCGTGGAAACATATTAAAGAAAGTCTAG
GAAGACCACAGGGATTTGAGATTGGTTACTGGAAAGACATGGAACAGGAAGAAGCAGCAGAAAAGGTGAAAACTGCAGG
AAATGAGTCATCTCTCCTTCTGACAGGGTTAGAAGGAAACACGTTATATCACCTAACTGTGCGGGCATACAATGCTGCA
GGGTATGGACCACCTAGTACTGCTGTGCGTGTAGCAACCAAGAAGTCCCCTCCCAGCCAAGCACCAAGTAATGTTATGT
GGATACAGGATGGTTCTCATGTGTCTCTTGGATGGGAGCCAGTCAGACCTCTAGCTAATGAGTCTGAGGTAATGGGATA
CAAGGTGTTACTTAGACAAGAAGGCCAAAGCAACAGTCAAGTTATAGAAACACAGAAAACTTCTGCAGTGGTAATTCTT
CCTGATGTTGGTGTCTACATTATTGAGGTCTGTGCAGTCAGTGAAGGAGGTGATGGGACTGCTAGTCCCCAGATTAGAG
TTCCATCTTATGCAGGAGGGAAAGTAACAAGTGCTCAGTCCACCTTACACATGTTCTCTACTTCCTCATCCTCTGTAAC
ATTGCTTTTGGTACTGATGGTTCCTTCAACTTCATGGTGAAGACTGCAGACTTTGTTGTTGTTGTTATTTATTTGCTTT
AGCTTGATGACAACAAGGGATGGAGTTTTATGTCTGTGGAGCAACAGGAAACCCAAGCTAATGCTTAAAGACCCATAGA
AATACCTGTGGTGCACTTAGAGGAGTGTTGGAGACACAGTCAAAAAATTCATCAGGTTTTTTCTCTTCAGTTTTTCTAA
AAGTCCTCTGGGGGAGGGGACATTTCTTGGCCCAAAAATATGCAGATTGTATGTAATAAACTTTTGTAAGCAAATGTAA
TTTCTGTCAAATGTACTTTACTTTTATAATATGTTCAATTTTGGTGATCCCAGTTATGTATCATTAGGTGTTTAAACAG
TGGTGTCTAGTACAGTACATCTGTTTGGTTCAGAAAAAAGAACAACTTTCTTTAACTAGAGAACAAAGTTTGATACAAC
TTTATCTAACACTTCTTGCATTCCACATGGTTGGCTGTTCTTATTGGCAAGAGAGCGATAAAAATATAATTGAGTTATA
TATGCTTTGCAGAAATACAGAGAATTTGTTCTTAAAATGCATAAATACATATTAAAATAGAATATATATATATATTGTC
AATACAATACTAGACAGAACATTCAAAAAGTGGCAAAATGGAGTTGAAAATAAGCCATTTATTTTATTTTGAGGTAAAC
TGAAAATAATTGAGTATAAACTTTAAAGGAAACAAATGCCATTGCTTTTCATCAAATACTGCATGATTTAACGTCAAAG
CAATCAAATGTTTATTTTCAATAGGAAACAAAAAAAAAAAAAAAAA
CitationYamagata M, Sanes JR. Expanding the Ig superfamily code for laminar specificity in retina: expression and role of contactins. J Neurosci. 2012 Oct 10;32(41):14402-14. 10.1523/JNEUROSCI.3193-12.2012.
CopyrightCopyright © 2012 the authors
CommentsAccording to the authors, "Full-length chicken cntn1, 2, 4, and 5 cDNAs and partial chick cntn3 and 6 cDNAs were amplified from oligo-dT-selected mRNA from embryonic day (E) 15 chick retina and optic tectum, using SuperScript III (Life Technologies), and Phusion high-fidelity thermostable DNA polymerase (New England BioLabs), and the products were cloned into pCR8-TOPO (Life Technologies)." As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence was obtained from NCBI (acc# NM_204612.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-41
stage 40
stage 40
stage 41
stage 41
stage 41
stage 41
stage 41
stage 41
stage 41
Retina
Double labeled in situs: CNTN4(green): CNTN5(red)
Double labeled in situs: CNTN5(green): CNTN4(red)
Double labeled in situs: CNTN1(green): CNTN5(red)
Doubled labeled in situs: CNTN2(red):CNTN5(green)

Mouse

Emage
MGI GXDMGI:3042287

Frog

Xenbase953060

Fruit Fly

BDGP

Zebra Finch

ZEBrACNTN5

Zebrafish

ZFINZDB-GENE-030131-5640
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