GEISHA - A Chicken Embryo Gene Expression Database
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COL13A1
collagen type XIII alpha 1 chain

Gene
Official SymbolCOL13A1
Official Full Namecollagen type XIII alpha 1 chain
CGNC ID3152
also known ascollagen alpha-1(XIII) chain|collagen, type XIII, alpha 1
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
Sequence Information
Genomic
RNAXM_001232218
PolypeptideXP_001232219
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly7354466FBgn0259244
Human1305ENSG00000197467MIM:120350
Mouse12817ENSMUSG00000058806All phenotypic alleles (4):Targeted, knock-out(2) Targeted, other(2) MGI:1277201
Xenopus1004982116462745
Zebrafish323154ZDB-GENE-030131-1874ZFIN:ZDB-GENE-030131-1874
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene769037
Ensembl Gene
KEGGgga:769037
GEISHA IdCOL13A1.Anderson.2020Data SourceDirect Submission
Complete cDNA Template Probeshow
CTCAAGTTTAGTAGGTTAAATGTGTTGGTGATCGGTGTGAGAGGATCTTGTATTCTTGCTTTCTCTTGGCTGTGTTTGC
CAATCCATTGTTCCCAGCAGGGGTTTGCTGGGAGCGTGAAATTCCATTTTGTGATAATTCCATTGTTTTCTCACAATAT
TGTTTCAAAATATTTCTTCAGTAAATCTCCCGTTCTGCTCTCCTGCAAAGATTTGCTTTTAGCCTGATGTTGCATGCAA
GCGACAGAGCCACAGACCGAGCAGCTTCACCCTTCTGGAGAGTCTTGTAGAGAAAGCACGCCATCCCTTGGTGCTCACA
TCTGGAACGCTCACATCATTGGCACTGCACCCAATTCTCACCTTCGTGCAACTCAGGCACCACATTGTTTGATGGTGGT
CAGACGTGAGCTCACTAATTCCTGCAGGAGGATGATTTCTGAAGCAATTAGTTGTGACGTAAGTGGTTTCCTTGGATTG
TAGAGAGAGATCTTTAGTTTTTCTTTGTTGGCATAGAACACACAGTATTTAATACAGCCGTAGTGATGAGATATGGGTA
AACACTGGCAGGGCATTGCTTCTGTGCGTCTCTTGAGTGCTGTTTGATGGAGACATCTGAGTCTGTATTTGCTTTTTAC
ACTGCTTATACTGAACTTTTATTAATATTAAGTATAGAACGCTATTTGACTTTCACTGCTGTAAGTGCTGTAACACAAT
TTTGTATTGGTGGTAGTTATTGTTGTTATACTGCTGACTCTAAGGGGTTATTTCAACTCCTTTTGGTGCAGCTTGGAAT
TTTTAGGCCTTTAAGAAAATTCCACACTAAATAATTGATCTGAGGGAGAGAACAAAGGGCTGTTCTTTCCCACTATCTT
TTCATCCTTAGCGGAATCTTCTTCAGCCAGAACAAGTATTTGCTTTTCCTTTTCTACTTTTTCCTTGGTGATTTGAGAG
CTTCGATTTGTTTTTGTCTTTAAACCATACATATTCCAGGACAATTTGCGTTTGTTATGTATGATGTACATACTTTCTT
TTCCCTTTTATAAAAATACCTGTTTACTTATGCGTG
CommentsImages provided by Claire Anderson. Probe sequence was obtained from NCBI Accession: CR352921.1 (clone ChEST400a18).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
Area Opaca
Epiblast
Primitive Streak
 
7-12
stage 10
stage 12
stage 12
Area Opaca
Atria
Eye
Forebrain
Foregut
Head Mesenchyme
Hindbrain
Midbrain
Neural Plate/Tube
Notochord
Somites
extraembryonic mesoderm
stage 10+, ventral
stage 12+
stage 12+, ventral

Mouse

EmageMGI:1277201
MGI GXDMGI:1277201

Frog

Xenbase6462745

Fruit Fly

BDGPFBgn0259244

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-030131-1874
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