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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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GJB6
gap junction protein beta 6

The human orthologue of this gene is associated
with the following human diseases:

Gene

Official Symbol	GJB6
Official Full Name	gap junction protein beta 6
CGNC ID	49469
also known as	CX31, gap junction beta-6 protein\|connexin 31\|gap junction protein, beta 6 (connexin 30)\|gap junction protein, beta 6, 30kDa
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_204931
Polypeptide	NP_990262

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	10804	ENSG00000121742	MIM:601544	MIM:604418
Mouse	14623	ENSMUSG00000040055	All phenotypic alleles (3):Targeted, other(3)	MGI:107588
Xenopus
Zebrafish	404725	ENSDARG00000042707	ZDB-GENE-040406-1	ZFIN:ZDB-GENE-040406-1

Gene Ontology

Molecular Function	gap junction channel activity
Biological Process	cell-cell signaling, sensory perception of sound
Cellular Component	connexon complex, integral component of membrane

Links to other databases

Entrez Gene	395771
Ensembl Gene
KEGG	gga:395771

Entry 1

GEISHA Id	GJB6.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	5’-TCGCTCCCACAGGTCATAC-3’
Reverse cDNA Template Primer	5’-AATTAACCCTCACTAAAGGGCACTGACACCACCTTAGC-3’	cDNA Template Length	838
Complete cDNA Template Probe	show TCGCTCCCACAGGTCATACCTTTAAGACAGACATGGATTGGGGAGCTCTGCAGACCATCTTAGGAGGTGTAAATAAACA CTCCACCAGCATTGGGAAGATATGGCTCACAGTCCTGTTCATCTTCCGTATCATGATCCTGGTTGTGGCTGCAGAGAGA GTCTGGGGAGATGAACAAGATGACTTTATCTGCAACACTTTGCAACCTGGTTGCAAAAATGTTTGCTATGATCACTTTT TCCCCATCTCTCACATCAGACTCTGGGCCCTGCAGCTGATCTTCGTCTCTACCCCTGCGCTGCTGGTGGCCATGCACGT GGCTTACAGGAGACACGAGAAGAAAAGGCAGTTCAGAAAGGGAGACCAGAAATGCGAGTATAAGGACATTGAAGAAATC AGAACCCAGAGGTTTCGTATTGAGGGCACCCTGTGGTGGACGTACACTTGCAGCATCTTCTTCAGATTGGTCTTTGAAG CAGTCTTCATGTATGCATTTTATTTCATGTATGATGGGTTCCGAATGCCTCGCTTAATGAAATGTAGTGCTTGGCCCTG CCCCAACACAGTAGACTGCTTTGTTTCTCGACCTACTGAAAAGACAGTGTTCACTATTTTCATGATTGCTGTGTCCAGC ATTTGCATTCTTTTAAATGTGGCTGAATTATGTTATTTACTGACAAAATTTTTTCTCAGAAGGTCTAGAAAAGCTGGAA ATCAGAAACACCACCCCAACCATGAGAATAAAGAAGAAACCAAACAAAATGAAATGAACGAGTTAATATCTGATAGCTG TCAGAACACAGTTATAGGATTCACAAGTAGCTAAGGTGGTGTCAGTGC

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

Unlabeled

7-12

stage 8

stage 10

stage 12

Area Opaca
Unlabeled Embryonic

19-24

stage 19

stage 21

stage 22

Ear/Otic Placode
Esophagus
Eye
Foregut
Head Mesenchyme
Lung
Nephric Ducts
Neural Plate/Tube
Pharyngeal Arches and Clefts
Trunk Mesenchyme

25-26

stage 26

Aorta
Ear/Otic Placode
Esophagus
Foregut
Head Mesenchyme
Hindbrain
Metencephalon
Midbrain
Nephric Ducts
Spinal Cord

Entry 2

GEISHA Id	CONNEXIN31.Heller.1998	Data Source	Publication
Complete cDNA Template Probe	show GATCAAACCCGGCGCTGCGGGCTGGGACCCACGCTGCTCCTGCCGGCCCCCACTCGGTCCTGCCGCTCCCCCTCTTTTT TTGAGGAATCTCTTCCTTAAGGAAAATCTCCGCCAGTTGGCGAGGCGTTCCTGGGACGGGCTGCCCGGGGAGGTGGCGG AAGCATCGCTCCCACAGGTCATACCTTTAAGACAGACATGGATTGGGGAGCTCTGCAGACCATCTTAGGAGGTGTAAAT AAACACTCCACCAGCATTGGGAAGATATGGCTCACAGTCCTGTTCATCTTCCGTATCATGATCCTGGTTGTGGCTGCAG AGAGAGTCTGGGGAGATGAACAAGATGACTTTATCTGCAACACTTTGCAACCTGGTTGCAAAAATGTTTGCTATGATCA CTTTTTCCCCATCTCTCACATCAGACTCTGGGCCCTGCAGCTGATCTTCGTCTCTACCCCTGCGCTGCTGGTGGCCATG CACGTGGCTTACAGGAGACACGAGAAGAAAAGGCAGTTCAGAAAGGGAGACCAGAAATGCGAGTATAAGGACATTGAAG AAATCAGAACCCAGAGGTTTCGTATTGAGGGCACCCTGTGGTGGACGTACACTTGCAGCATCTTCTTCAGATTGGTCTT TGAAGCAGTCTTCATGTATGCATTTTATTTCATGTATGATGGGTTCCGAATGCCTCGCTTAATGAAATGTAGTGCTTGG CCCTGCCCCAACACAGTAGACTGCTTTGTTTCTCGACCTACTGAAAAGACAGTGTTCACTATTTTCATGATTGCTGTGT CCAGCATTTGCATTCTTTTAAATGTGGCTGAATTATGTTATTTACTGACAAAATTTTTTCTCAGAAGGTCTAGAAAAGC TGGAAATCAGAAACACCACCCCAACCATGAGAATAAAGAAGAAACCAAACAAAATGAAATGAACGAGTTAATATCTGAT AGCTGTCAGAACACAGTTATAGGATTCACAAGTAGCTAAGGTGGTGTCAGTGCTGATATTCACTCCGAAAAGGGTGAGT GTTCTTTGTCTAAAGGCTGCAAATAAGATTTGTTATACTAAACAGCTAACGCTGGGAGAGATTTAGATGTGTAGTGACA GGTGTCAATTATGCATCTGTTGGGGGGAAAAAAGGCAGCTTAAACTTTTGAACATTATGAGGATTAAATAGGAAAGTGT ATTTTCCTATGGCAATCCTTACAAGTTGACTATGACAAGTGCACTAGTGCCTTCGTGCAGATACAGTTCCTGAA
Citation	Heller S, Sheane CA, Javed Z, Hudspeth AJ. Molecular markers for cell types of the inner ear and candidate genes for hearing disorders. Proc Natl Acad Sci U S A. 1998 Sep 15;95(19):11400-5.
Copyright	Copyright © 2012 National Academy of Sciences. All rights reserved.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #AF072699.1 ).