Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

HAPLN1
hyaluronan and proteoglycan link protein 1

Gene

Official Symbol	HAPLN1
Official Full Name	hyaluronan and proteoglycan link protein 1
CGNC ID	49825
also known as	hyaluronan and proteoglycan link protein 1\|cartilage link protein\|cartilage-linking protein 1\|proteoglycan link protein, Hyaluronan and proteoglycan link protein 1 precursor, Proteoglycan link protein, Cartilage link protein
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_205482
Polypeptide	NP_990813
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.3928

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	1404	ENSG00000145681		MIM:115435
Mouse	12950	ENSMUSG00000021613	All phenotypic alleles (3):Targeted, knock-out(3)	MGI:1337006
Xenopus	100490017			6037476
Zebrafish	569074, 493635	ENSDARG00000068516, ENSDARG00000089769	ZDB-GENE-050920-1, ZDB-GENE-050302-175	ZFIN:ZDB-GENE-050920-1, ZFIN:ZDB-GENE-050302-175

Gene Ontology

Molecular Function	hyaluronic acid binding
Biological Process	cell adhesion
Cellular Component	proteinaceous extracellular matrix

Links to other databases

Entrez Gene	396475
Ensembl Gene	ENSGALG00000015627
KEGG	gga:396475

Entry 1

GEISHA Id	I44	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GGGGCACTCTGCAGTGAGGGATGCTGAACAGGCTTTGAGCTCGCACCCGAACTCGCTTGAAGGAATGGAAGGGCAGTGA AGAAGATTCTTGTGACTGTGAAGATGACAAGTCTACTCTTTCTGGTGCTGATTTCTGTCTGCTGGGCAGAACCTCATCC TGACAACTCAAGCCTGGAGCATGAGAGGATTATTCACATCCAAGAAGAAAATGGACCCCGCCTACTTGTGGTAGCAGAA CAAGCTAAGATCTTCTCTCAGCGAGGTGGCAACGTCACACTGCCTTGTAAATTTTACCATGAACACACATCAACAGCTG GCTCAGGAACCCACAAAATCCGGGTCAAGTGGACCAAACTCACCTCAGATTACCTCAAAGAAGTGGATGTCTTTGTCGC AATGGGACACCACAGAAAGAGCTACGGAAAGTATCAGGGCAGAGTGTTTCTGAGGGAAAGCAGTGAGAACGATGCCTCT CTTATAATCACAAATATAATGCTGGAGGATTATGGGAGATACAAGTGCGAAGTGATTGAAGGATTAGAGGACGACACAG CAGTGGTAGCTCTGAATTTGGAAGGTGTTGTTTTCCCCTATTCTCCACGTCTGGGTCGTTACAACCTAAACTTCCATGA GGCTCAGCAAGCTTGCCTGGACCAGGACTCCATCATTGCCTCCTTCGACCAGCTCTACGAGGCCTGGAGGTCAGGGCTG GACTGGTGCAATGCTGGCTGGCTCAGTGATGGTTCAGTGCAGTACCCTATCACCAAGCCCAGGGAGCCCTGTGGAGGGA AGAATACGGTGCCCCGTGTCAGAAACTATGGCTTCTGGGATAAAGAGAGGAGCCGATATAATGTTTTCTGCTTTACTTC AAACTTCAATGGTCGTTTTTACTACCTAATACACCCAACCAAGCTGACCTATGATGAAGCCGTGCAGGCCTGCCTGAAG GATGGCGCTCAGATTGCCAAGGTTGGGCAGATATTCGCTGCCTGGAAGCTCCTTGGTTATGACCGCTGTGATGCCGGCT GGCTGGCAGACGGCAGCGTCCGCTACCCCATCTCCAGACCCAGAAAGCGCTGCAGCCCCAACGAAGCTGCCGTCCGCTT TGTAGGCTTTCCTGATAAAAAGCACAAGCTGTATGGTGTCTACTGTTTCAGAGCTTACAACTGAAAATACCTAGAGCTG CAACAGTCTTTAATTCATTAAGAACATGTGAAATATTTCGATATGAACTCGTGCAAGTTACCAAAACTGTGATAAACCT TTCTTACTTACTGTAGAGTCATTTTCATAAACCAAAACCATTAATTTGTTTTTGTTTCTGTTTAAATATTTTTGTAAAA GTATCATTCCATAGATATTTAAAAATAATATAATTTAATGGAAGCTCTAGGTAAGAAGAGCCAAATTCTTTAAGCTACG TCATCCCAACAAAATATAATTTTCATGAATGGGGCATGCAATAGAGCTTGACAATTGCTAGGACACAATTATGGAATGT AAGGCTACTCAAAGCAGAAGCTTTTAAAAGCACAAATTTTACATGTTTGTACCCGTTTGAGATACACTGCAAATTGATT GTATCTGGAGTTTTGAATTAAGATGTTTTTGTTTATAGGGGTCAGTGAGGTTTTGCAAAAAATGAAAATT

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 6

Area Pellucida
Extraembryonic

7-12

stage 11

Extraembryonic
Surface Ectoderm

13-18

stage 15

Extraembryonic
Hindbrain
Lateral Plate Mesoderm
Paraxial Mesoderm
Spinal Cord
Surface Ectoderm

19-24

stage 21

Extraembryonic

stage 25

Extraembryonic

Entry 2

GEISHA Id	CRTL1.Colas.2003	Data Source	Publication
Complete cDNA Template Probe	show GCGCACACCAACTTAAGGTGAGCACCATAAACTTCCTCTGCACTTCGCTGTCCTGTTTCAAACTGTTGGAGAGTTCTGA GCGCATCTCGACTTGGGAGCTCCACACAAGTGAAGAAGATTCTTGTGACTGTGAAGATGACAAGTCTACTCTTTCTGGT GCTGATTTCTGTCTGCTGGGCAGAACCTCATCCTGACAACTCAAGCCTGGAGCATGAGAGGATTATTCACATCCAAGAA GAAAATGGACCCCGCCTACTTGTGGTAGCAGAACAAGCTAAGATCTTCTCTCAGCGAGGTGGCAACGTCACACTGCCTT GTAAATTTTACCATGAACACACATCAACAGCTGGCTCAGGAACCCACAAAATCCGGGTCAAGTGGACCAAACTCACCTC AGATTACCTCAAAGAAGTGGATGTCTTTGTCGCAATGGGACACCACAGAAAGAGCTACGGAAAGTATCAGGGCAGAGTG TTTCTGAGGGAAAGCAGTGAGAACGATGCCTCTCTTATAATCACGAATATAATGCTGGAGGATTATGGGAGATACAAGT GCGAAGTGATTGAAGGATTAGAGGACGACACAGCAGTGGTAGCTCTGAATTTGGAAGGTGTTGTTTTCCCCTATTCTCC ACGTCTGGGTCGTTACAACCTAAACTTCCATGAGGCTCAGCAAGCTTGCCTGGACCAGGACTCCATCATTGCCTCCTTC GACCAGCTCTACGAGGCCTGGAGGTCAGGGCTGGACTGGTGCAATGCTGGCTGGCTCAGTGATGGTTCAGTGCAGTACC CTATCACCAAGCCCAGAGAGCCCTGTGGAGGGAAGAATACGGTGCCCGGTGTCAGAAACTATGGCTTCTGGGATAAAGA GAGGAGCCGATATGATGTTTTCTGCTTTACTTCAAACTTCAATGGTCGTTTTTACTACCTAATACACCCAACCAAGCTG ACCTATGATGAAGCCGTGCAGGCCTGCCTGAAGGATGGCGCTCAGATTGCCAAGGTTGGGCAGATATTCGCTGCCTGGA AGCTCCTTGGTTATGACCGCTGTGATGCCGGCTGGCTGGCAGACGGCAGCGTCCGCTACCCCATCTCCAGACCCAGAAA GCGCTGCAGCCCCAACGAGGCTGCCGTCCGCTTTGTAGGCTTTCCTGATAAAAAGCACAAGCTGTATGGTGTCTACTGT TTCAGAGCTTACAACTGAAAATACCTAGAGCTGCAACAGTCTTTAATTCATTAAGAACATGTGAAATATTTCGATATGA ACTCGTGCAAGTTACCAAAACTGTGATAAACCTTTCTTACTTACTGTAGAGTCATTTTCATAAACCAAAACCATTAATT TGTTTTTGTTTCTGTTTAAATATTTTTGTAAAAGTATCATTCCATAGATATTTAAAAATAATATAAGTTTAATGGAAGC TCTAGGTAAGAAGAGCCAAATTCTTTAAGCTACGTCATCCCAACAAAATATAATTTTCATGAATGGGGCATGCAATAGA GCTTGACAATTGCTAGGACACAATTATGGAATGTAAGGCTACTCAAAGCAGAAGCTTTTAAAAGCACAAATTTTACATG TTTGTACCCGTTTGAGATACACAGCAAATTGATTGTATCTGGAGTTTTGAATTAAGATGTTTTTGTTTATAGGGGTCAG TGAGGTTTTGCAAAAAATAAAAATTAAAAAAAAAAAAAAAAAAAAAAAATATAATATTTAATATTTCTTAAGCTATTTA CACATCACAAGAAAATAAAAAATTGGAAAAAAAAATCAAATGATCAAGTCTTAGAAGAAGATTATTGAATAAAATCTGA AACCAGCTATTAAGGTTTAGAAGAGAAGAAGTACTTTATTTCCTTACATCTTATCTGTATCTAAATATACATCTGTTTT TTAAACTATCAATG
Citation	Colas JF, Schoenwolf GC. Localization of cartilage linking protein 1 during primary neurulation in the chick embryo. Brain Res Dev Brain Res. 2003 Mar 14;141(1-2):141-8.
Copyright	Copyright 2003 Elsevier Science B.V.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # M13212).